Carg11200 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg11200
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 5291790 .. 5292005 (-)
RNA-Seq ExpressionCarg11200
SyntenyCarg11200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTAAAGTCAGCGGTGGGCGGGAAGTTCCGGGCGCCGCCGGTTGTACCGGCGTCGTTAATGATTGGGTTCGTGATGGCGACGAGTTTTTTGGCTGTTTTTCCCGCAGCTTTTGAGGTTTAAATCGGACGTTAGTATGTTTGTAGGGTACGCGGCTTTGAGCGCGTGTGTAAAGAGTATGATCGCCGAGTGGATCATGCGTTGCTCATTTAA

mRNA sequence

ATGGCGTTAAAGTCAGCGGTGGGCGGGAAGTTCCGGGCGCCGCCGGTTGTACCGGCGTCGTTAATGATTGGGTTCGTGATGGCGACGAGTTTTTTGGCTGTTTTTCCCGCAGCTTTTGAGTATGTTTGTAGGGTACGCGGCTTTGAGCGCGTGTGTAAAGAGTATGATCGCCGAGTGGATCATGCGTTGCTCATTTAA

Coding sequence (CDS)

ATGGCGTTAAAGTCAGCGGTGGGCGGGAAGTTCCGGGCGCCGCCGGTTGTACCGGCGTCGTTAATGATTGGGTTCGTGATGGCGACGAGTTTTTTGGCTGTTTTTCCCGCAGCTTTTGAGTATGTTTGTAGGGTACGCGGCTTTGAGCGCGTGTGTAAAGAGTATGATCGCCGAGTGGATCATGCGTTGCTCATTTAA

Protein sequence

MALKSAVGGKFRAPPVVPASLMIGFVMATSFLAVFPAAFEYVCRVRGFERVCKEYDRRVDHALLI
Homology
[Close]
BLAST of Carg11200 vs. NCBI nr
Match: KAG7018061.1 (hypothetical protein SDJN02_19927, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.6 bits (327), Expect = 5.0e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MALKSAVGGKFRAPPVVPASLMIGFVMATSFLAVFPAAFEYVCRVRGFERVCKEYDRRVD 60
          MALKSAVGGKFRAPPVVPASLMIGFVMATSFLAVFPAAFEYVCRVRGFERVCKEYDRRVD
Sbjct: 1  MALKSAVGGKFRAPPVVPASLMIGFVMATSFLAVFPAAFEYVCRVRGFERVCKEYDRRVD 60

Query: 61 HALLI 66
          HALLI
Sbjct: 61 HALLI 65

The following BLAST results are available for this feature:
BLAST of Carg11200 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7018061.15.0e-27100.00hypothetical protein SDJN02_19927, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg11200 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg11200 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg11200 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11200-RACarg11200-RAmRNA