Carg11166 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11166
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	flowering time control protein FCA
Location	Carg_Chr14: 5041922 .. 5042891 (-)
RNA-Seq Expression	Carg11166
Synteny	Carg11166

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATGAAGGTGATCTGAATTATAAAATCCTTGTAGTTACATTGAAGTAAAAGATTATGCCATGATTGACATCCTAAAAGGTTGAAACTTGACTGTGCGGATAATTACTGAAGAGGTCATTAATGTCATATTGTCATGGTAACCTGTGTGTGTTCTCATTTATGCCCTTGTGCAGCCTCCTAGTGCACGTGGCGTTCAAACCTCTAGTGGTACTCCCAAATCACCTCGGAGGCGTCCAAGCTATCGGGTAGAAGTTCCTTTGGAGTGTGATTGGAGTGAACACAGCTGCCCAGACGGTTTCAAATACTATTATAACTGTATCACCTATGGTAAGCTTTATGTCTTCATCCATCCGCCTTTCCACGGTTGTTTCCTATTTTGTGGTGCAATTTATGATAGATACCTTTGAAAATTGGTCCTTAGTGGAAGAAACCAGAGGAGTTTGCCTTGTTTGAGCAACAATTGAAGCAGGAAAAGCTTAAAAAATCGAACCATCAGCTTCATTCTTCATTAGCAGGCCTCTCATCAACCGAAGTACTGCCTCAGCCAAATATCTTGAGTAAAAAACTTGAAGTCCAATCTTCCTCAGCTGTACGAGTTAGTATTCATTCATACATATACATTTACATACATACATTTGCCCTTTCATTCCCTATAACTGTTCCAGCTATATCTTGTCATGTCCAAAATCACTCTGAAATAGGATATTAATCATTCAAAACCAGTTTTGATGGTATGAAAATCGTGTTTAAAAGTTTAAAATCAAGCATCAAATTGACTGGAATGATTAAAAACATGATCGAAGTGATATTTAATCATTTGAAAATCACTCTCAAACGAGAATGCAATTTCTGTTCTCTCTAATTCTTTAATATGCTCAATTTCTGCAGGAGTTGGATTGTATGCGACTGCAATCTAAACCAAGTCCTGTTGTTATTCCAGCCTGTGTTTAACAATGTTGTCTAAGT

mRNA sequence

ATGCCTCCTAGTGCACGTGGCGTTCAAACCTCTAGTGGTACTCCCAAATCACCTCGGAGGCGTCCAAGCTATCGGGTAGAAGTTCCTTTGGAGTGTGATTGGAGTGAACACAGCTGCCCAGACGGTTTCAAATACTATTATAACTGTATCACCTATGGCCTCTCATCAACCGAAGTACTGCCTCAGCCAAATATCTTGAGTAAAAAACTTGAAGTCCAATCTTCCTCAGCTGAGTTGGATTGTATGCGACTGCAATCTAAACCAAGTCCTGTTGTTATTCCAGCCTGTGTTTAACAATGTTGTCTAAGT

Coding sequence (CDS)

ATGCCTCCTAGTGCACGTGGCGTTCAAACCTCTAGTGGTACTCCCAAATCACCTCGGAGGCGTCCAAGCTATCGGGTAGAAGTTCCTTTGGAGTGTGATTGGAGTGAACACAGCTGCCCAGACGGTTTCAAATACTATTATAACTGTATCACCTATGGCCTCTCATCAACCGAAGTACTGCCTCAGCCAAATATCTTGAGTAAAAAACTTGAAGTCCAATCTTCCTCAGCTGAGTTGGATTGTATGCGACTGCAATCTAAACCAAGTCCTGTTGTTATTCCAGCCTGTGTTTAA

Protein sequence

MPPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITYGLSSTEVLPQPNILSKKLEVQSSSAELDCMRLQSKPSPVVIPACV

Homology

[Close]

BLAST of Carg11166 vs. NCBI nr
Match: KAG7018027.1 (hypothetical protein SDJN02_19893, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 202.6 bits (514), Expect = 1.5e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MPPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITYGLSSTEVL 60
          MPPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITYGLSSTEVL
Sbjct: 1  MPPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITYGLSSTEVL 60

Query: 61 PQPNILSKKLEVQSSSAELDCMRLQSKPSPVVIPACV 98
          PQPNILSKKLEVQSSSAELDCMRLQSKPSPVVIPACV
Sbjct: 61 PQPNILSKKLEVQSSSAELDCMRLQSKPSPVVIPACV 97

[Close]

BLAST of Carg11166 vs. NCBI nr
Match: XP_011651537.1 (flowering time control protein FCA isoform X2 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 5.9e-32
Identity = 79/130 (60.77%), Postives = 84/130 (64.62%), Query Frame = 0


Query: 2   PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITY--------- 61
           PPSARGVQT SGTP SP  RPS  VEV LECDWSEH+CPDGFKYYYNC+TY         
Sbjct: 349 PPSARGVQTFSGTPNSPMGRPSSWVEVTLECDWSEHTCPDGFKYYYNCVTYESLWEKPEE 408

Query: 62  -------------------------GLSSTEVLPQPNILSKKLEVQSSSAELDCMRLQSK 98
                                    G+SS EVLPQPN+LS+KLE Q SSAELDCMRLQSK
Sbjct: 409 FALFEQQLKEEKLQKPNHQLHSSLSGVSSQEVLPQPNLLSQKLEAQYSSAELDCMRLQSK 468

[Close]

BLAST of Carg11166 vs. NCBI nr
Match: XP_031738780.1 (flowering time control protein FCA isoform X1 [Cucumis sativus] >KGN58132.1 hypothetical protein Csa_017585 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 1.9e-30
Identity = 79/132 (59.85%), Postives = 84/132 (63.64%), Query Frame = 0


Query: 2   PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITY--------- 61
           PPSARGVQT SGTP SP  RPS  VEV LECDWSEH+CPDGFKYYYNC+TY         
Sbjct: 349 PPSARGVQTFSGTPNSPMGRPSSWVEVTLECDWSEHTCPDGFKYYYNCVTYESLWEKPEE 408

Query: 62  -------------------------GLSSTEVLPQPNILSKKLEVQSSSA--ELDCMRLQ 98
                                    G+SS EVLPQPN+LS+KLE Q SSA  ELDCMRLQ
Sbjct: 409 FALFEQQLKEEKLQKPNHQLHSSLSGVSSQEVLPQPNLLSQKLEAQYSSAVRELDCMRLQ 468

[Close]

BLAST of Carg11166 vs. NCBI nr
Match: XP_038905034.1 (flowering time control protein FCA-like [Benincasa hispida])

HSP 1 Score: 137.9 bits (346), Expect = 4.7e-29
Identity = 78/142 (54.93%), Postives = 84/142 (59.15%), Query Frame = 0


Query: 2   PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITY--------- 61
           PP+ARGVQT SGTP SP  RP  +VEV LECDWSEH+CPDGFKYYYNC+TY         
Sbjct: 169 PPAARGVQTFSGTPNSPVGRPCSQVEVTLECDWSEHTCPDGFKYYYNCVTYESLWEKPEE 228

Query: 62  -------------------------GLSSTEVLPQPNILSKKLEVQSSSA---------- 98
                                    GLSS EV PQPN+ S+KLEVQ SSA          
Sbjct: 229 FALFEQQLKQEKLKKSNHQLHSSLAGLSSPEVPPQPNLFSQKLEVQFSSAVRVSIHSYIF 288

[Close]

BLAST of Carg11166 vs. NCBI nr
Match: XP_022157018.1 (CUGBP Elav-like family member 4 [Momordica charantia])

HSP 1 Score: 132.1 bits (331), Expect = 2.6e-27
Identity = 73/131 (55.73%), Postives = 80/131 (61.07%), Query Frame = 0


Query: 2   PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCIT---------- 61
           PP+A G+QT SG P SP  RP  RVEV LECDWSEH+CPDGFKYYYNC+T          
Sbjct: 553 PPTAHGLQTFSGVPNSPLVRPCSRVEVSLECDWSEHTCPDGFKYYYNCVTCESSWEKPEE 612

Query: 62  -----------------------YGLSSTEVLPQPNILSKKLEVQSSSA--ELDCMRLQS 98
                                    +SS EVLP PN+ S+KLEVQSSSA  ELDCMRLQS
Sbjct: 613 FALFEQQLKQEKLQKQNHQLHSSLPISSPEVLPHPNVFSQKLEVQSSSAVRELDCMRLQS 672

[Close]

BLAST of Carg11166 vs. ExPASy Swiss-Prot
Match: B8BCZ8 (Flowering time control protein FCA OS=Oryza sativa subsp. indica OX=39946 GN=FCA PE=3 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 2.2e-05
Identity = 30/78 (38.46%), Postives = 38/78 (48.72%), Query Frame = 0


Query: 28  VPLECDWSEHSCPDGFKYYYNCIT----------YGLSSTEVLPQPNILSKKLEVQSSSA 87
           VPL C+W+EH+ P+GFKYYYN IT          Y L   +   Q     K L +Q    
Sbjct: 609 VPLTCNWTEHTSPEGFKYYYNSITRESKWDKPEEYVLYEQQQQQQQQ--QKLLLLQQHQQ 668

Query: 88  ELDCMRLQSKPSPVVIPA 96
           +L   +LQS P     PA
Sbjct: 669 KLAMQQLQSPPQAQTHPA 684

[Close]

BLAST of Carg11166 vs. ExPASy Swiss-Prot
Match: Q6K271 (Flowering time control protein FCA OS=Oryza sativa subsp. japonica OX=39947 GN=FCA PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.2e-05
Identity = 30/78 (38.46%), Postives = 38/78 (48.72%), Query Frame = 0


Query: 28  VPLECDWSEHSCPDGFKYYYNCIT----------YGLSSTEVLPQPNILSKKLEVQSSSA 87
           VPL C+W+EH+ P+GFKYYYN IT          Y L   +   Q     K L +Q    
Sbjct: 609 VPLTCNWTEHTSPEGFKYYYNSITRESKWDKPEEYVLYEQQQQQQQQ--QKLLLLQQHQQ 668

Query: 88  ELDCMRLQSKPSPVVIPA 96
           +L   +LQS P     PA
Sbjct: 669 KLAMQQLQSPPQAQTHPA 684

[Close]

BLAST of Carg11166 vs. ExPASy TrEMBL
Match: A0A0A0LBT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536140 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 9.2e-31
Identity = 79/132 (59.85%), Postives = 84/132 (63.64%), Query Frame = 0


Query: 2   PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITY--------- 61
           PPSARGVQT SGTP SP  RPS  VEV LECDWSEH+CPDGFKYYYNC+TY         
Sbjct: 349 PPSARGVQTFSGTPNSPMGRPSSWVEVTLECDWSEHTCPDGFKYYYNCVTYESLWEKPEE 408

Query: 62  -------------------------GLSSTEVLPQPNILSKKLEVQSSSA--ELDCMRLQ 98
                                    G+SS EVLPQPN+LS+KLE Q SSA  ELDCMRLQ
Sbjct: 409 FALFEQQLKEEKLQKPNHQLHSSLSGVSSQEVLPQPNLLSQKLEAQYSSAVRELDCMRLQ 468

[Close]

BLAST of Carg11166 vs. ExPASy TrEMBL
Match: A0A6J1DSB0 (CUGBP Elav-like family member 4 OS=Momordica charantia OX=3673 GN=LOC111023844 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.2e-27
Identity = 73/131 (55.73%), Postives = 80/131 (61.07%), Query Frame = 0


Query: 2   PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCIT---------- 61
           PP+A G+QT SG P SP  RP  RVEV LECDWSEH+CPDGFKYYYNC+T          
Sbjct: 553 PPTAHGLQTFSGVPNSPLVRPCSRVEVSLECDWSEHTCPDGFKYYYNCVTCESSWEKPEE 612

Query: 62  -----------------------YGLSSTEVLPQPNILSKKLEVQSSSA--ELDCMRLQS 98
                                    +SS EVLP PN+ S+KLEVQSSSA  ELDCMRLQS
Sbjct: 613 FALFEQQLKQEKLQKQNHQLHSSLPISSPEVLPHPNVFSQKLEVQSSSAVRELDCMRLQS 672

[Close]

BLAST of Carg11166 vs. ExPASy TrEMBL
Match: A0A5A7T550 (Flowering time control protein FCA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00580 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.6e-27
Identity = 73/132 (55.30%), Postives = 80/132 (60.61%), Query Frame = 0


Query: 2   PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITY--------- 61
           PP+ RGVQT S T  SP  RPS RVEV LECDWSEH+CPDGFKYYYNC+TY         
Sbjct: 349 PPAVRGVQTFSCTSDSPMGRPSSRVEVTLECDWSEHTCPDGFKYYYNCVTYESLWEKPEE 408

Query: 62  -------------------------GLSSTEVLPQPNILSKKLEVQSSSA--ELDCMRLQ 98
                                    G+SS EV PQPN+ S+KL+ Q SSA  ELDCMRLQ
Sbjct: 409 FALFEKQLKQEKLQKPNHQIHSSLPGVSSQEVPPQPNLFSQKLDAQYSSAVRELDCMRLQ 468

[Close]

BLAST of Carg11166 vs. ExPASy TrEMBL
Match: A0A1S3BIF0 (flowering time control protein FCA OS=Cucumis melo OX=3656 GN=LOC103489911 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.6e-27
Identity = 73/132 (55.30%), Postives = 80/132 (60.61%), Query Frame = 0


Query: 2   PPSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCITY--------- 61
           PP+ RGVQT S T  SP  RPS RVEV LECDWSEH+CPDGFKYYYNC+TY         
Sbjct: 594 PPAVRGVQTFSCTSDSPMGRPSSRVEVTLECDWSEHTCPDGFKYYYNCVTYESLWEKPEE 653

Query: 62  -------------------------GLSSTEVLPQPNILSKKLEVQSSSA--ELDCMRLQ 98
                                    G+SS EV PQPN+ S+KL+ Q SSA  ELDCMRLQ
Sbjct: 654 FALFEKQLKQEKLQKPNHQIHSSLPGVSSQEVPPQPNLFSQKLDAQYSSAVRELDCMRLQ 713

[Close]

BLAST of Carg11166 vs. ExPASy TrEMBL
Match: A0A6J1GA62 (flowering time control protein FCA OS=Cucurbita moschata OX=3662 GN=LOC111452192 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.4e-25
Identity = 64/123 (52.03%), Postives = 73/123 (59.35%), Query Frame = 0


Query: 3   PSARGVQTSSGTPKSPRRRPSYRVEVPLECDWSEHSCPDGFKYYYNCIT----------- 62
           P AR VQT +GTP SP   PS +VE PLECDWSEH+CPDGFKYYYNC+T           
Sbjct: 342 PPARSVQTFTGTPNSPMTHPSSQVEGPLECDWSEHTCPDGFKYYYNCVTCESLWEKPEEF 401

Query: 63  -----------------YGLSSTEVLPQPNILSKKLEVQSSSAELDCMRLQSKPSPVVIP 98
                             GLSS E LPQPN+    ++  ++  ELDCMRLQSK SPVV P
Sbjct: 402 ATFEQQSKQEKLQKPNHAGLSSPEGLPQPNLFKPNVQTSAAVRELDCMRLQSKASPVVSP 461

[Close]

BLAST of Carg11166 vs. TAIR 10
Match: AT2G47310.1 (flowering time control protein-related / FCA gamma-related )

HSP 1 Score: 48.1 bits (113), Expect = 4.5e-06
Identity = 17/24 (70.83%), Postives = 21/24 (87.50%), Query Frame = 0


Query: 28  VPLECDWSEHSCPDGFKYYYNCIT 52
           V  ECDWSEH+CP+G KYY++CIT
Sbjct: 401 VSSECDWSEHTCPNGNKYYFHCIT 424

[Close]

BLAST of Carg11166 vs. TAIR 10
Match: AT4G16280.2 (RNA binding;abscisic acid binding )

HSP 1 Score: 42.4 bits (98), Expect = 2.5e-04
Identity = 19/49 (38.78%), Postives = 29/49 (59.18%), Query Frame = 0


Query: 30  LECDWSEHSCPDGFKYYYNCITYGLSSTEVLPQPNILSKKLEVQSSSAE 79
           ++C W+EH+ PDGFKYYYN +T G S  E   +  +  ++ + Q    E
Sbjct: 593 VKCTWTEHTSPDGFKYYYNGLT-GESKWEKPEEMIVFEREQQKQQQHQE 640

[Close]

BLAST of Carg11166 vs. TAIR 10
Match: AT4G16280.1 (RNA binding;abscisic acid binding )

HSP 1 Score: 42.4 bits (98), Expect = 2.5e-04
Identity = 19/49 (38.78%), Postives = 29/49 (59.18%), Query Frame = 0


Query: 30  LECDWSEHSCPDGFKYYYNCITYGLSSTEVLPQPNILSKKLEVQSSSAE 79
           ++C W+EH+ PDGFKYYYN +T G S  E   +  +  ++ + Q    E
Sbjct: 351 VKCTWTEHTSPDGFKYYYNGLT-GESKWEKPEEMIVFEREQQKQQQHQE 398

[Close]

BLAST of Carg11166 vs. TAIR 10
Match: AT4G16280.4 (RNA binding;abscisic acid binding )

HSP 1 Score: 42.4 bits (98), Expect = 2.5e-04
Identity = 19/49 (38.78%), Postives = 29/49 (59.18%), Query Frame = 0


Query: 30  LECDWSEHSCPDGFKYYYNCITYGLSSTEVLPQPNILSKKLEVQSSSAE 79
           ++C W+EH+ PDGFKYYYN +T G S  E   +  +  ++ + Q    E
Sbjct: 518 VKCTWTEHTSPDGFKYYYNGLT-GESKWEKPEEMIVFEREQQKQQQHQE 565

The following BLAST results are available for this feature:

BLAST of Carg11166 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7018027.1	1.5e-48	100.00	hypothetical protein SDJN02_19893, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_011651537.1	5.9e-32	60.77	flowering time control protein FCA isoform X2 [Cucumis sativus]	[more]
XP_031738780.1	1.9e-30	59.85	flowering time control protein FCA isoform X1 [Cucumis sativus] >KGN58132.1 hypo...	[more]
XP_038905034.1	4.7e-29	54.93	flowering time control protein FCA-like [Benincasa hispida]	[more]
XP_022157018.1	2.6e-27	55.73	CUGBP Elav-like family member 4 [Momordica charantia]	[more]

BLAST of Carg11166 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B8BCZ8	2.2e-05	38.46	Flowering time control protein FCA OS=Oryza sativa subsp. indica OX=39946 GN=FCA...	[more]
Q6K271	2.2e-05	38.46	Flowering time control protein FCA OS=Oryza sativa subsp. japonica OX=39947 GN=F...	[more]

BLAST of Carg11166 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBT6	9.2e-31	59.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536140 PE=4 SV=1	[more]
A0A6J1DSB0	1.2e-27	55.73	CUGBP Elav-like family member 4 OS=Momordica charantia OX=3673 GN=LOC111023844 P...	[more]
A0A5A7T550	3.6e-27	55.30	Flowering time control protein FCA OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BIF0	3.6e-27	55.30	flowering time control protein FCA OS=Cucumis melo OX=3656 GN=LOC103489911 PE=4 ...	[more]
A0A6J1GA62	4.4e-25	52.03	flowering time control protein FCA OS=Cucurbita moschata OX=3662 GN=LOC111452192...	[more]

BLAST of Carg11166 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47310.1	4.5e-06	70.83	flowering time control protein-related / FCA gamma-related	[more]
AT4G16280.2	2.5e-04	38.78	RNA binding;abscisic acid binding	[more]
AT4G16280.1	2.5e-04	38.78	RNA binding;abscisic acid binding	[more]
AT4G16280.4	2.5e-04	38.78	RNA binding;abscisic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.20.70.10		coord: 30..68 e-value: 1.1E-6 score: 29.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
IPR036020	WW domain superfamily	SUPERFAMILY	51045	WW domain	coord: 28..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11166-RA	Carg11166-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding