Carg11110 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg11110
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr08: 5459604 .. 5461012 (-)
RNA-Seq ExpressionCarg11110
SyntenyCarg11110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGCCTGAATCTACACTACGCAATGCAAAAAAATATGGAAACAATGATTTGTGCAAAGTATGTGATATCCAATTGTATATAATCATGCTCCTACCTACTCAGCAGTGAACCCAAGAAAATATTATGTACTCATTGTCTTGTTGTCATCTCTCCTCCAACTATGGGGTTTACAGGAACGGATTCAAGCTGTTCTTGACTGCTTGTGTTGCCAAGTTGAAGCCAGTGTTGAGAATGATGATCTGTTGAAATCTCAGAACCATCAAAAGACTGATCTCTGCTCACTGTCATTGGTATTACAGGTTTTGTTCTAAAAGTGTCTTGCAATGGCAGCCTGCAAACTGGACAGGTAGATTGCTTTCTCAGCCATACATCAATGCAGGCGAGATGAAAACTGTGACCACATTTGGGTATTATTCTCAGTACTTCCTTCTCTTCATACTCACTCAAACAGATTGAGCACCTGAAAAATGAAGCAAAATGAACCATAGTTTATTACGTCAGGTTATGTAACGGCCCAAGCCACCGCTAGCAGATATTGTCACTCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAAGTTTTTAAAACGCATATGTTAGGGAGAAGTTTTCACACTCTTATAAACAATGTTTCGTTCTCTGTGAGAACTTTCCACACCCTTATAAAGAATGTTCCATTCTCCTCAAGGTTTTTAAAACGCGTATGTTAGAGAGAGGTTTTCACACCCTTATAAAGAATGTTTCGTTCTCTGGGAGACGTTTCCACACCCTTATAAGAAGTTGGCATGTTCTAGAAAGTATAACTATGAATTCTTCTGCAGGAAATTTGGTAATGAAGTGAAAGTTGTACTCACTGAGCATCTTCTACAGAACTGAAAGCCTCCAGGTCGAACTTCATCGTTGGTATAGCAGCTATGAGAACCGGTTCGAGACCACTCACCCGAGACTCTGGCTGGCATCAAACAACAAAGAATCAAGAGACTTGTCATTTTGTCATACACAGATGTAAGGCAATGGAAGTATGGTACAATTCTAATCTTTGGCTACTTTACTGAATACCATATGATGATTAACCAATGAGATTTATGATCTACAGAAATACAAATAACACACTGCAGATCCGGATTAAGAGAGAAGCAGCCGTTATTTCTTACCTGCTGCTCAAGATCAACCCTGGATTCAATCTCGTAATTGGGGGAATTGGAGTGAGATGAACGAAGTCGACCACAGATGATTCTTGTACAGACGAACACTATGAATGTTGCACTCATTCCAAACCCAATAACAGTGGTAATCAAGTTCATACCAGAACTCGGCATATTCAAATCCCTCAAATTTCAAAACCCCAGCTGGAAAAACCTCAGAAACTGCAGAATTAGATGAGGGAAAGAAAGGGGATTGGGGAAAGCAG

mRNA sequence

AAGCCTGAATCTACACTACGCAATGCAAAAAAATATGGAAACAATGATTTGTGCAAAGAACGGATTCAAGCTGTTCTTGACTGCTTGTGTTGCCAAGTTGAAGCCAGTGTTGAGAATGATGATCTGTTGAAATCTCAGAACCATCAAAAGACTGATCTCTGCTCACTGTCATTGGTATTACAGTGTCTTGCAATGGCAGCCTGCAAACTGGACAGAACTGAAAGCCTCCAGGTCGAACTTCATCGTTGGTATAGCAGCTATGAGAACCGGTTCGAGACCACTCACCCGAGACTCTGGCTGGCATCAAACAACAAAGAATCAAGAGACTTGTCATTTTGTCATACACAGATAAATACAAATAACACACTGCAGATCCGGATTAAGAGAGAAGCAGCCGTTATTTCTTACCTGCTGCTCAAGATCAACCCTGGATTCAATCTCAACTCGGCATATTCAAATCCCTCAAATTTCAAAACCCCAGCTGGAAAAACCTCAGAAACTGCAGAATTAGATGAGGGAAAGAAAGGGGATTGGGGAAAGCAG

Coding sequence (CDS)

AAGCCTGAATCTACACTACGCAATGCAAAAAAATATGGAAACAATGATTTGTGCAAAGAACGGATTCAAGCTGTTCTTGACTGCTTGTGTTGCCAAGTTGAAGCCAGTGTTGAGAATGATGATCTGTTGAAATCTCAGAACCATCAAAAGACTGATCTCTGCTCACTGTCATTGGTATTACAGTGTCTTGCAATGGCAGCCTGCAAACTGGACAGAACTGAAAGCCTCCAGGTCGAACTTCATCGTTGGTATAGCAGCTATGAGAACCGGTTCGAGACCACTCACCCGAGACTCTGGCTGGCATCAAACAACAAAGAATCAAGAGACTTGTCATTTTGTCATACACAGATAAATACAAATAACACACTGCAGATCCGGATTAAGAGAGAAGCAGCCGTTATTTCTTACCTGCTGCTCAAGATCAACCCTGGATTCAATCTCAACTCGGCATATTCAAATCCCTCAAATTTCAAAACCCCAGCTGGAAAAACCTCAGAAACTGCAGAATTAGATGAGGGAAAGAAAGGGGATTGGGGAAAGCAG

Protein sequence

KPESTLRNAKKYGNNDLCKERIQAVLDCLCCQVEASVENDDLLKSQNHQKTDLCSLSLVLQCLAMAACKLDRTESLQVELHRWYSSYENRFETTHPRLWLASNNKESRDLSFCHTQINTNNTLQIRIKREAAVISYLLLKINPGFNLNSAYSNPSNFKTPAGKTSETAELDEGKKGDWGKQ
Homology
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BLAST of Carg11110 vs. NCBI nr
Match: KAG7026027.1 (hypothetical protein SDJN02_12525, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 367.1 bits (941), Expect = 8.8e-98
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0 

Query: 1   KPESTLRNAKKYGNNDLCKERIQAVLDCLCCQVEASVENDDLLKSQNHQKTDLCSLSLVL 60
           KPESTLRNAKKYGNNDLCKERIQAVLDCLCCQVEASVENDDLLKSQNHQKTDLCSLSLVL
Sbjct: 1   KPESTLRNAKKYGNNDLCKERIQAVLDCLCCQVEASVENDDLLKSQNHQKTDLCSLSLVL 60

Query: 61  QCLAMAACKLDRTESLQVELHRWYSSYENRFETTHPRLWLASNNKESRDLSFCHTQINTN 120
           QCLAMAACKLDRTESLQVELHRWYSSYENRFETTHPRLWLASNNKESRDLSFCHTQINTN
Sbjct: 61  QCLAMAACKLDRTESLQVELHRWYSSYENRFETTHPRLWLASNNKESRDLSFCHTQINTN 120

Query: 121 NTLQIRIKREAAVISYLLLKINPGFNLNSAYSNPSNFKTPAGKTSETAELDEGKKGDWGK 180
           NTLQIRIKREAAVISYLLLKINPGFNLNSAYSNPSNFKTPAGKTSETAELDEGKKGDWGK
Sbjct: 121 NTLQIRIKREAAVISYLLLKINPGFNLNSAYSNPSNFKTPAGKTSETAELDEGKKGDWGK 180

Query: 181 Q 182
           Q
Sbjct: 181 Q 181

The following BLAST results are available for this feature:
BLAST of Carg11110 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026027.18.8e-98100.00hypothetical protein SDJN02_12525, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg11110 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg11110 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg11110 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..181
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..181

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11110-RACarg11110-RAmRNA