Carg11107 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11107
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr08: 5462678 .. 5463223 (+)
RNA-Seq Expression	Carg11107
Synteny	Carg11107

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGGAACTCGTCAATCATCCCCTAAAACCTTTTGTGTCTAGCAAACTGAAAGCCATGTACCTTAAAAAAGAGACTACAAACAGTCCCAGCAAAGCTGCAAGTGCAAAGAATGTGATCAAGGTCTTCCTCTACCCTCCGACAAAGAATGCAACAACACGGCTCAATCAGAGTAAACATCTTCCTCGAAAACTTGTCTAAAGTATTAACTCTTTTATGGATAACTTTATTTGAACTTTTACCTTCCATAGAGACAAAATAGTTTCAATCTTGATAAGCGTATGAAGAACTTCCAGAAACGGATCATCACAAGGGCAGAACCATAATGAGGCAAAGAATGTGCTCAGTATCTTCCTAATGTAAATTGAACCACAAGGCTCCAATTGCCTCAATTTCGATTTCCACTTAACAATGCTAATTGATTGAAGAATCAAAAGTTCTTAACAATGCCTATAACACAAATTGTAATGTACAGAAGCTCACCAGAATGCTCGAGTTTCAAACTCGGCAACGTCAGTGTCTCACGCATGAAACTTGGAAACA

mRNA sequence

ATGGAGAAGGAACTCGTCAATCATCCCCTAAAACCTTTTGTGTCTAGCAAACTGAAAGCCATGTACCTTAAAAAAGAGACTACAAACAGTCCCAGCAAAGCTGCAAGTGCAAAGAATGTGATCAAGGTCTTCCTCTACCCTCCGACAAAGAATGCAACAACACGGCTCAATCAGAAAGCTCACCAGAATGCTCGAGTTTCAAACTCGGCAACGTCAGTGTCTCACGCATGAAACTTGGAAACA

Coding sequence (CDS)

ATGGAGAAGGAACTCGTCAATCATCCCCTAAAACCTTTTGTGTCTAGCAAACTGAAAGCCATGTACCTTAAAAAAGAGACTACAAACAGTCCCAGCAAAGCTGCAAGTGCAAAGAATGTGATCAAGGTCTTCCTCTACCCTCCGACAAAGAATGCAACAACACGGCTCAATCAGAAAGCTCACCAGAATGCTCGAGTTTCAAACTCGGCAACGTCAGTGTCTCACGCATGA

Protein sequence

MEKELVNHPLKPFVSSKLKAMYLKKETTNSPSKAASAKNVIKVFLYPPTKNATTRLNQKAHQNARVSNSATSVSHA

Homology

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BLAST of Carg11107 vs. NCBI nr
Match: KAG7026029.1 (hypothetical protein SDJN02_12527, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145.2 bits (365), Expect = 2.3e-31
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MEKELVNHPLKPFVSSKLKAMYLKKETTNSPSKAASAKNVIKVFLYPPTKNATTRLNQKA 60
          MEKELVNHPLKPFVSSKLKAMYLKKETTNSPSKAASAKNVIKVFLYPPTKNATTRLNQKA
Sbjct: 1  MEKELVNHPLKPFVSSKLKAMYLKKETTNSPSKAASAKNVIKVFLYPPTKNATTRLNQKA 60

Query: 61 HQNARVSNSATSVSHA 77
          HQNARVSNSATSVSHA
Sbjct: 61 HQNARVSNSATSVSHA 76

The following BLAST results are available for this feature:

BLAST of Carg11107 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026029.1	2.3e-31	100.00	hypothetical protein SDJN02_12527, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg11107 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg11107 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg11107 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11107-RA	Carg11107-RA	mRNA