Carg11057 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11057
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RNA polymerase sigma factor
Location	Carg_Chr08: 5807641 .. 5811775 (+)
RNA-Seq Expression	Carg11057
Synteny	Carg11057

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACCAATCGCCTCTTTCATTCCCTTCATCAATCAATGAAACCCTTTTCATATGCTTCACATTTCCCCTTCTGGGTCGCCGCCCCAGTTCAATTTTGAATGATTCCTTCATTTATGTCCGCCATAGTTGCAGATTAGCGGAACCCAGTTGGAGAACGAAGAACAAGAACAAGAACAACAAGGCGATGTCGTGTTTACTTCCCCAATTCAAGTGCCATCCCGAAACATTCTCAATCCAATTTAAGACCCCCGCCATCACAATTACGCCTACGCCTACGCCTACTTCTTCTCACCATCATACCTTTCTTCCCACTGCTAATTCTACTTACTGTGAGTGTTTTACTCTCTAATTCTCTCTTTTCCCATTTTAAATGGTTTTTGATGTTTTGGGTTTCTTATTTGCCTAGCTGGGCCAAAATGGCTCGTGTTTAGTTGGATTGTTTGAAATGTTGTCCTGAGATTCTTTGTTTTAGGTGGCCATTATGCGTGCTAGTATTTACAAATGGTGCTGGTTTTGATGTTTTTATTGTATCTGATATAGAATGAGACTTGAATTTCCCTTTTCAATTACTGTTGTGCTTGTTTAAGAGATAGAATGTTCCTCGTTCTATTGGAATACTGCGTTGTGTTACCTGCTATCGATATGTCATTTGGTAATCTCTGCTTAGCCATACGGTTCTGCTATCGATGTGCTATCGATATGTCGTGATAACTTCCATAAGCTCTCATGATTTTGCTTTTGGTTTCCTCAAAAATCCTCGTACCAATGGAGATAGCATTTCTTACTTATAAACCCAAGATCAACGCCTTAGTTAGCCAACGTGGGACTCCCTCCTAATAATCCTCAACATGATTGGCAATTATGTCTAATCGGTTTCAGAGAAAAATTCTAATAGAAATAACGAAAGAGCCTCTAAGAAAAATAAAGGATGGAAGTAGTTTTTTAAACCATTCATTCAACTAGTCCTTACTTTGCCCAAATGATCTTTTGTATGTAACCATAGTTGGATAGAATGTTAGCTAGGTGTAGCGCTGTCGGTTAGACGTCTAATGTAGTTGCACACAACGTATCAACAATGAGAAAAATGGGGATTCATACCGACTTTGGAACTCCAGAAGGCCGATCAAAGGCCTCTGTTCCCATCTTTAGGCTCCTTTGATGACCATTGATTGTTTTTGTTTTGAAAATTAAGCGTATAAACACTCTTTTCACTCGGGCAAAAAAGAAAGATGAAAACCGTTCTAAAGAAATTGTGAGAAAGCACACACAATTTTGGACAATAGAGCGGAAAATGAAATCGTTATCAAGCGGGACCTTAGTTACTTTTTTTCTTATCTATAGGTGTAAATGATTTCCCATTGTTTAAGTAATGGTGAAGAGAAGTCCCAAGCATAAGAAATTTGGTACTCCTTTTGTAGCAGATAAGGCTATAACTGAGTCGTTCATTTGGTTGAATGTTAGTGCGTATAGTGTCCATAGATTTTATTGAAAACTTTTCTCATAAAATTTTGAATCATGCAGTTAAAGTCAGAGATCCTCATAGTTTACGGACACAATGTATCTTGTCTGCGGCGTCACCACCGACATCGACTGGAACAGCTACAACATTCAATGTGGATCGACTTAAATTGCCTCCTTTTGATACGAACACCGACTCAGTCTCTGCAGAAAGACTACGATCATATTTAGGTGCAGTTGAATCGAGCCTAGCCTCAACGCTTCTAACGAGTGAAGAGGCTACAATAGCAGCTGCTGCAGCTGAAGCAGTTGCTCTTGCTAAAGCAGCCGTCAAGGCTGCAAATGATGCAGCTCTTCTGGTTAATAATAGCAACTCTGCCAGATCAGTAACAAAATCTCAATCGTCTTCGAGATCCAATGCTCTACATTTCAAATGGGATCAGTTTATGGAATCCGAAAGGGCTGATATAATCGGAGAGCCGGTAGGAGTTAATAATCGTCCTGTGGAAGGTGATGCTTTGGAACCCAGCACAGCAGAATCTGATGATATGGAGCCAACATCTGAAGAACTTGAACTCTTAGAGGATGAATTCTCTAAGAGTATAGCCGTAAGATCGATTCGTCAAACAGAACGAAAAGCTAGAAGAACTAGAGCCTCAGAGAAGGCTGCTACTAGTGTAGTGTCACTGAAGTCGGGTTCTAGCAGCCGGAAGAAGCGTAATTCTGGACAAGAAGTGGACTATAATGACCCATTGCGTTATTTGAGAGCAACTACAAGCGCTTCTAAACTTCTTACTGCAAGTGATGAGCTTGAACTGTCAGAAGGAATTCAGGTTTGGATCGAAAACCACATCGCACTTGAAAACGTTAACATCGACCTGCAAGTAAAAGTAAAAATAAATTCAGCTTTTCAGCACTCAACTTTACAGTCACTACTAAATCTGGATTAGAAACATTATGTCAAATAACTTTTGATCTGATCCTGCTTTTAAACAGAATGTAGTTGTTTCTATCCTCAAATTTGATTCATTTATCAACTACAATTGCTCTTTAGATAGTATTTTGGATTAATATCTGGATTTGTTGTTATTTTCCTCGTGTTGTGTTCGATTACCGACACTTGTTCCGACTATTTCTAGGACTTGCTGAAACTAGAAAGACTCAAGGAGGAGCTTGCAGAACGTTACGGAAACGAACCAACCTTCGCACAATGGGCCGCTGCTGCTGGAGTAAACCAGAGGACGCTGAGAAAGCGTCTAAACTACGGTACTTGTTGTAAAGATAAAATGATAAAAAGCAACATCCGTCTTGTCATATCGATAGCGAAAAATTATCAGGGAGGTGGAATGAATCTCCAAGATCTAGTTCAGGTACTTTTTCATGGATGCACACGAACCAAAATGCTTATAAATGGAAACTGAAAATTCGAATGCCTTGTTTATTGCTCGTGTTGTGATGTAGGAAGGATGTCGAGGCCTTGTACGAGGTGCGGAGAAGTTCGATGCTTCAAAAGGCTTCAAGTTTTCAACGTATGCTCATTGGTGGATTAAGCAGGCAGTCCGAAAGTCTCTTTCCGATCAGTCGAGGACTATTCGCTTGCCGGTATGTTTCTTTCCACCTGAATTATAACAGGAGAGACAAAAATTTCCCAATGAACTAAAGATTTCATTGATGAATGGACAGTTTCACATGGTGGAAGCAACTTATAAGGTAAAGGAAGCTAGAAAGCAATTATATACTGCAAATGGAAGACTTCCTAACGATGAAGAAATCGCCGTAGCAGCCGGTCTGTCGATGAAGAGGCTTGCTACAGTACTGATGACTCCGAAAGCACCTCGATCCCTGGAACAGAAGTTCGGGATCAATCAAAATCTCAAACCTTCGGTCTGTCGCCTTGCTTCTACTCGGATCTTCCTTCCTCTCCCATTGCAGTCTCAGCATGTTTTAACTAGTTGAATCTCATGCTCTTTTCCAGGAAGTCATTTCCGACCCGGAAGCAGTAACCGCAGAAGATCTGTTGATAAAACAGTTCATGAAGCAGGAGCTAGAAAAGGTACTCGACTCGCTTAATCCGAGAGAGAGACAAATAATTAGATGGAGGTATGGCATGGAAGATGGGAGGATGAAAACATTGCAAGAAATAGGAGAAATGATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAGCTATGTGCGTTCAGAAAACTCAAAAACAAGAAGAGAACTAAGCATTTGCAGCAGTATCTGATGCCATGATGATGAGTTCTTCATCAGATTCCTTCAAAGAGTATCTATTATGATCTGGTATGAGAGGCTTAAACAAGGCTTGTTCTTTCTTTTTTCTGTAACATTTTTATTGTTCTTTCCCACTTTGAGGATAGATTAGTATCATGTTGTTTACAGACATAGCTACTTTCTGTTCATACATATTTAATTTAAATCAAGAGATTTGTCTTGATCCATGATTGTGGCCTCTGGATTAATGTCTTTACGATATAGTGTAACGAAAAGATGAACTTTTTTCGGGTTATTGACGACAGTTGTGCTATCAATACCAGATTCTACAGTCGAGCCGACCGATAATTCTACAGAAGGTTAGAGGTGAATTGAGACTTTTGAGTGGTGAATCAGTTC

mRNA sequence

TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACCAATCGCCTCTTTCATTCCCTTCATCAATCAATGAAACCCTTTTCATATGCTTCACATTTCCCCTTCTGGGTCGCCGCCCCAGTTCAATTTTGAATGATTCCTTCATTTATGTCCGCCATAGTTGCAGATTAGCGGAACCCAGTTGGAGAACGAAGAACAAGAACAAGAACAACAAGGCGATGTCGTGTTTACTTCCCCAATTCAAGTGCCATCCCGAAACATTCTCAATCCAATTTAAGACCCCCGCCATCACAATTACGCCTACGCCTACGCCTACTTCTTCTCACCATCATACCTTTCTTCCCACTGCTAATTCTACTTACTTTAAAGTCAGAGATCCTCATAGTTTACGGACACAATGTATCTTGTCTGCGGCGTCACCACCGACATCGACTGGAACAGCTACAACATTCAATGTGGATCGACTTAAATTGCCTCCTTTTGATACGAACACCGACTCAGTCTCTGCAGAAAGACTACGATCATATTTAGTTGAATCGAGCCTAGCCTCAACGCTTCTAACGAGTGAAGAGGCTACAATAGCAGCTGCTGCAGCTGAAGCAGTTGCTCTTGCTAAAGCAGCCGTCAAGGCTGCAAATGATGCAGCTCTTCTGGTTAATAATAGCAACTCTGCCAGATCAGTAACAAAATCTCAATCGTCTTCGAGATCCAATGCTCTACATTTCAAATGGGATCAGTTTATGGAATCCGAAAGGGCTGATATAATCGGAGAGCCGGTAGGAGTTAATAATCGTCCTGTGGAAGGTGATGCTTTGGAACCCAGCACAGCAGAATCTGATGATATGGAGCCAACATCTGAAGAACTTGAACTCTTAGAGGATGAATTCTCTAAGAGTATAGCCGTAAGATCGATTCGTCAAACAGAACGAAAAGCTAGAAGAACTAGAGCCTCAGAGAAGGCTGCTACTAGTGTAGTGTCACTGAAGTCGGGTTCTAGCAGCCGGAAGAAGCGTAATTCTGGACAAGAAGTGGACTATAATGACCCATTGCGTTATTTGAGAGCAACTACAAGCGCTTCTAAACTTCTTACTGCAAGTGATGAGCTTGAACTGTCAGAAGGAATTCAGGACTTGCTGAAACTAGAAAGACTCAAGGAGGAGCTTGCAGAACGTTACGGAAACGAACCAACCTTCGCACAATGGGCCGCTGCTGCTGGAGTAAACCAGAGGACGCTGAGAAAGCGTCTAAACTACGGTACTTGTTGTAAAGATAAAATGATAAAAAGCAACATCCGTCTTGTCATATCGATAGCGAAAAATTATCAGGGAGGTGGAATGAATCTCCAAGATCTAGTTCAGGAAGGATGTCGAGGCCTTGTACGAGGTGCGGAGAAGTTCGATGCTTCAAAAGGCTTCAAGTTTTCAACGTATGCTCATTGGTGGATTAAGCAGGCAGTCCGAAAGTCTCTTTCCGATCAGTCGAGGACTATTCGCTTGCCGTTTCACATGGTGGAAGCAACTTATAAGGTAAAGGAAGCTAGAAAGCAATTATATACTGCAAATGGAAGACTTCCTAACGATGAAGAAATCGCCGTAGCAGCCGGTCTGTCGATGAAGAGGCTTGCTACAGTACTGATGACTCCGAAAGCACCTCGATCCCTGGAACAGAAGTTCGGGATCAATCAAAATCTCAAACCTTCGGAAGTCATTTCCGACCCGGAAGCAGTAACCGCAGAAGATCTGTTGATAAAACAGTTCATGAAGCAGGAGCTAGAAAAGGTACTCGACTCGCTTAATCCGAGAGAGAGACAAATAATTAGATGGAGGTATGGCATGGAAGATGGGAGGATGAAAACATTGCAAGAAATAGGAGAAATGATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAGCTATGTGCGTTCAGAAAACTCAAAAACAAGAAGAGAACTAAGCATTTGCAGCAGTATCTGATGCCATGATGATGAGTTCTTCATCAGATTCCTTCAAAGAGTATCTATTATGATCTGGTATGAGAGGCTTAAACAAGGCTTGTTCTTTCTTTTTTCTGTAACATTTTTATTGTTCTTTCCCACTTTGAGGATAGATTAGTATCATGTTGTTTACAGACATAGCTACTTTCTGTTCATACATATTTAATTTAAATCAAGAGATTTGTCTTGATCCATGATTGTGGCCTCTGGATTAATGTCTTTACGATATAGTGTAACGAAAAGATGAACTTTTTTCGGGTTATTGACGACAGTTGTGCTATCAATACCAGATTCTACAGTCGAGCCGACCGATAATTCTACAGAAGGTTAGAGGTGAATTGAGACTTTTGAGTGGTGAATCAGTTC

Coding sequence (CDS)

ATGTCGTGTTTACTTCCCCAATTCAAGTGCCATCCCGAAACATTCTCAATCCAATTTAAGACCCCCGCCATCACAATTACGCCTACGCCTACGCCTACTTCTTCTCACCATCATACCTTTCTTCCCACTGCTAATTCTACTTACTTTAAAGTCAGAGATCCTCATAGTTTACGGACACAATGTATCTTGTCTGCGGCGTCACCACCGACATCGACTGGAACAGCTACAACATTCAATGTGGATCGACTTAAATTGCCTCCTTTTGATACGAACACCGACTCAGTCTCTGCAGAAAGACTACGATCATATTTAGTTGAATCGAGCCTAGCCTCAACGCTTCTAACGAGTGAAGAGGCTACAATAGCAGCTGCTGCAGCTGAAGCAGTTGCTCTTGCTAAAGCAGCCGTCAAGGCTGCAAATGATGCAGCTCTTCTGGTTAATAATAGCAACTCTGCCAGATCAGTAACAAAATCTCAATCGTCTTCGAGATCCAATGCTCTACATTTCAAATGGGATCAGTTTATGGAATCCGAAAGGGCTGATATAATCGGAGAGCCGGTAGGAGTTAATAATCGTCCTGTGGAAGGTGATGCTTTGGAACCCAGCACAGCAGAATCTGATGATATGGAGCCAACATCTGAAGAACTTGAACTCTTAGAGGATGAATTCTCTAAGAGTATAGCCGTAAGATCGATTCGTCAAACAGAACGAAAAGCTAGAAGAACTAGAGCCTCAGAGAAGGCTGCTACTAGTGTAGTGTCACTGAAGTCGGGTTCTAGCAGCCGGAAGAAGCGTAATTCTGGACAAGAAGTGGACTATAATGACCCATTGCGTTATTTGAGAGCAACTACAAGCGCTTCTAAACTTCTTACTGCAAGTGATGAGCTTGAACTGTCAGAAGGAATTCAGGACTTGCTGAAACTAGAAAGACTCAAGGAGGAGCTTGCAGAACGTTACGGAAACGAACCAACCTTCGCACAATGGGCCGCTGCTGCTGGAGTAAACCAGAGGACGCTGAGAAAGCGTCTAAACTACGGTACTTGTTGTAAAGATAAAATGATAAAAAGCAACATCCGTCTTGTCATATCGATAGCGAAAAATTATCAGGGAGGTGGAATGAATCTCCAAGATCTAGTTCAGGAAGGATGTCGAGGCCTTGTACGAGGTGCGGAGAAGTTCGATGCTTCAAAAGGCTTCAAGTTTTCAACGTATGCTCATTGGTGGATTAAGCAGGCAGTCCGAAAGTCTCTTTCCGATCAGTCGAGGACTATTCGCTTGCCGTTTCACATGGTGGAAGCAACTTATAAGGTAAAGGAAGCTAGAAAGCAATTATATACTGCAAATGGAAGACTTCCTAACGATGAAGAAATCGCCGTAGCAGCCGGTCTGTCGATGAAGAGGCTTGCTACAGTACTGATGACTCCGAAAGCACCTCGATCCCTGGAACAGAAGTTCGGGATCAATCAAAATCTCAAACCTTCGGAAGTCATTTCCGACCCGGAAGCAGTAACCGCAGAAGATCTGTTGATAAAACAGTTCATGAAGCAGGAGCTAGAAAAGGTACTCGACTCGCTTAATCCGAGAGAGAGACAAATAATTAGATGGAGGTATGGCATGGAAGATGGGAGGATGAAAACATTGCAAGAAATAGGAGAAATGATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAGCTATGTGCGTTCAGAAAACTCAAAAACAAGAAGAGAACTAAGCATTTGCAGCAGTATCTGATGCCATGA

Protein sequence

MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQCILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLVESSLASTLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESERADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP

Homology

[Close]

BLAST of Carg11057 vs. NCBI nr
Match: KAG6593746.1 (RNA polymerase sigma factor sigB, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1098.2 bits (2839), Expect = 0.0e+00
Identity = 586/589 (99.49%), Postives = 586/589 (99.49%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQ
Sbjct: 97  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQ 156

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTSEE 120
           CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL  VESSLASTLLTSEE
Sbjct: 157 CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEE 216

Query: 121 ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESE 180
           ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESE
Sbjct: 217 ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESE 276

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERK
Sbjct: 277 RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERK 336

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
Sbjct: 337 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 396

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERLKEELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI
Sbjct: 397 SEGIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 456

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
Sbjct: 457 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 516

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP
Sbjct: 517 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 576

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG
Sbjct: 577 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 636

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 588
           MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
Sbjct: 637 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 685

[Close]

BLAST of Carg11057 vs. NCBI nr
Match: XP_023515004.1 (RNA polymerase sigma factor sigB [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1092.4 bits (2824), Expect = 0.0e+00
Identity = 584/589 (99.15%), Postives = 584/589 (99.15%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPH LRTQ
Sbjct: 96  MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHGLRTQ 155

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTSEE 120
           CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL  VESSLASTLLTSEE
Sbjct: 156 CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEE 215

Query: 121 ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESE 180
           ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESE
Sbjct: 216 ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESE 275

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERK
Sbjct: 276 RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERK 335

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
Sbjct: 336 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 395

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERLKEELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 396 SEGIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNI 455

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
Sbjct: 456 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 515

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP
Sbjct: 516 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 575

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG
Sbjct: 576 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 635

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 588
           MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
Sbjct: 636 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 684

[Close]

BLAST of Carg11057 vs. NCBI nr
Match: XP_022964550.1 (RNA polymerase sigma factor sigB [Cucurbita moschata])

HSP 1 Score: 1077.4 bits (2785), Expect = 0.0e+00
Identity = 579/589 (98.30%), Postives = 580/589 (98.47%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKTPA TI  TPTPTSSHHHTFLPTANSTYFK RDPHSLRTQ
Sbjct: 98  MSCLLPQFKCHPETFSIQFKTPASTI--TPTPTSSHHHTFLPTANSTYFKFRDPHSLRTQ 157

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTSEE 120
           CILSAASPPT TGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL  VESSLASTLLTSEE
Sbjct: 158 CILSAASPPTLTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEE 217

Query: 121 ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESE 180
           ATIAAAAAEAVALAKAAVKAANDAALLVNNSNS+RSVTKSQSSSRSNALHFKWDQFMESE
Sbjct: 218 ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSSRSVTKSQSSSRSNALHFKWDQFMESE 277

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERK
Sbjct: 278 RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERK 337

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
Sbjct: 338 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 397

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERLKEELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 398 SEGIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNI 457

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
Sbjct: 458 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 517

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP
Sbjct: 518 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 577

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG
Sbjct: 578 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 637

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 588
           MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
Sbjct: 638 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 684

[Close]

BLAST of Carg11057 vs. NCBI nr
Match: XP_023000238.1 (RNA polymerase sigma factor sigB [Cucurbita maxima])

HSP 1 Score: 1065.1 bits (2753), Expect = 2.2e-307
Identity = 576/589 (97.79%), Postives = 578/589 (98.13%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKTPAITI  TPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQ
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTPAITI--TPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQ 60

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTSEE 120
           CILSAA   TSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL  VESSLASTLLTSEE
Sbjct: 61  CILSAA---TSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEE 120

Query: 121 ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESE 180
           ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSS+SNALHFKWDQFMESE
Sbjct: 121 ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSKSNALHFKWDQFMESE 180

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELL+DEFSKSIAVRS RQTERK
Sbjct: 181 RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLQDEFSKSIAVRSNRQTERK 240

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
Sbjct: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERLKEELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 301 SEGIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNI 360

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
Sbjct: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLP DEEIAVAAGLSMKRLATVLMTPKAP
Sbjct: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATVLMTPKAP 480

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG
Sbjct: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 588
           MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
Sbjct: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 584

[Close]

BLAST of Carg11057 vs. NCBI nr
Match: XP_038875580.1 (RNA polymerase sigma factor sigB isoform X1 [Benincasa hispida])

HSP 1 Score: 962.2 bits (2486), Expect = 2.0e-276
Identity = 518/588 (88.10%), Postives = 545/588 (92.69%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKT A          + HHHTFLPTANS+Y KVRDPHSLRTQ
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAA--------NYAPHHHTFLPTANSSYTKVRDPHSLRTQ 60

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTSEE 120
           CILSAASPPTSTGTATT NVDRL LPPFDTNTDSVS ERLRSYL  VESSLASTLLTSEE
Sbjct: 61  CILSAASPPTSTGTATTLNVDRLMLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEE 120

Query: 121 ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESE 180
           ATIAAAAAEAVALAKAAVK A DAALL NNSNS+R+  KS+SS R +ALHFKW QFMESE
Sbjct: 121 ATIAAAAAEAVALAKAAVKVARDAALLANNSNSSRAGEKSRSSPRPDALHFKWAQFMESE 180

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVNNRP+E DAL+PST +SDDMEPTSEELELL+DE S+SI VRS RQTERK
Sbjct: 181 RADIIGEPVGVNNRPMETDALQPSTTKSDDMEPTSEELELLQDELSESITVRSKRQTERK 240

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRA+EK ATSVVSLKSGSSSRKKRNS QEVDY+DPLRYLRATTS S+LLTA++ELEL
Sbjct: 241 ARRTRAAEKTATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTAAEELEL 300

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERL+EELA+RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 301 SEGIQDLLKLERLQEELADRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNI 360

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
Sbjct: 361 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATY+VKEARKQLY+ NGR P+DEEIA AAGLSMKRLA VLMTPKAP
Sbjct: 421 DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAP 480

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQK GINQNLKPSEVISDPEA TAED+LIKQFMKQ+LEKVLDSLNPRERQ+IRWR+G
Sbjct: 481 RSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFG 540

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 587
           MEDGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQYL+
Sbjct: 541 MEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLI 580

[Close]

BLAST of Carg11057 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 642.9 bits (1657), Expect = 3.6e-183
Identity = 372/600 (62.00%), Postives = 453/600 (75.50%), Query Frame = 0


Query: 2   SCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQC 61
           SCLLPQFKC P++FSI F+T         +  +  H+       S +F        + QC
Sbjct: 3   SCLLPQFKCPPDSFSIHFRT---------SFCAPKHN-----KGSVFF--------QPQC 62

Query: 62  ILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSY-----------LVESSLA 121
            +S  SP   T   +  +V +L+LP FDT++DS+ ++R  +Y            +E+  +
Sbjct: 63  AVS-TSPALLT---SMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALAS 122

Query: 122 STLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFK 181
            TLLTS+EA + AAAAEAVALA+AAVK A DA L   NSN+   +T S +  RS     K
Sbjct: 123 ETLLTSDEAVVVAAAAEAVALARAAVKVAKDATLF-KNSNNTNLLTSSTADKRS-----K 182

Query: 182 WDQFMESERADIIGEPVGVNNRPVEGDALEPSTAESD---DME-PTSEELELLEDEFSKS 241
           WDQF E ERA I+G  + V++  +  D +  S +  +   D+E    EE+ELLE++ S S
Sbjct: 183 WDQFTEKERAGILGH-LAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVS 242

Query: 242 IAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSA 301
           +AVRS RQTERKARR +  EK A+ + S+K+GSS +KKR   QEVD+NDPLRYLR TTS+
Sbjct: 243 LAVRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSS 302

Query: 302 SKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYG 361
           SKLLT  +E ELS GIQDLLKLERL+ EL ER G +PTFAQWA+AAGV+Q++LR+R+++G
Sbjct: 303 SKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHG 362

Query: 362 TCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 421
           T CKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAH
Sbjct: 363 TLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAH 422

Query: 422 WWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMK 481
           WWIKQAVRKSLSDQSR IRLPFHMVEATY+VKEARKQLY+  G+ P +EEIA A GLSMK
Sbjct: 423 WWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMK 482

Query: 482 RLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLN 541
           RL  VL++PK PRSL+QK G+NQNLKPSEVI+DPEAVT+ED+LIK+FM+Q+L+KVLDSL 
Sbjct: 483 RLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLG 542

Query: 542 PRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 587
            RE+Q+IRWR+GMEDGRMKTLQEIGEMMGVSRER+RQIE  AFRKLKNKKR  HLQQYL+
Sbjct: 543 TREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]

BLAST of Carg11057 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.0e-73
Identity = 146/332 (43.98%), Postives = 221/332 (66.57%), Query Frame = 0


Query: 256 KSGSSSRKKRNSGQEVDY--NDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKE 315
           KSG +++ +R +  +  +   D +R         +LL A +E+EL+  I DLL+LER++E
Sbjct: 59  KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118

Query: 316 ELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGM 375
            L+E+   +P  ++WA A  +     R RL+ G   KDKM++SN+RLV+SIAK Y   G+
Sbjct: 119 RLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178

Query: 376 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 435
           + QDL+QEG  GL+R AEKFD  KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E 
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238

Query: 436 TYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKP 495
             ++K+  K L    GR P +EEIA    +++++L  +  + + P SLE   G  ++ + 
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 298

Query: 496 SEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEM 555
            + I + +  T ED + K  ++++LEKVLDSL+PRER ++R RYG++DGRMKTL+EIG++
Sbjct: 299 GDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQI 358

Query: 556 MGVSRERIRQIELCAFRKLKNKKRTKHLQQYL 586
             V+RERIRQIE  A RKL++  R   L++Y+
Sbjct: 359 FNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389

[Close]

BLAST of Carg11057 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 264.2 bits (674), Expect = 3.4e-69
Identity = 155/386 (40.16%), Postives = 235/386 (60.88%), Query Frame = 0


Query: 213 SEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVD 272
           ++  ELL D   K    ++ R + +KA  T A  + AT++       +   + + G++ D
Sbjct: 17  TQATELL-DPALKPAETKAKRSSRKKA--TTAVVEPATTIAPTADVDAIDDEDSVGEDED 76

Query: 273 -------------YNDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKEELAERY 332
                          D +R         +LL A +E+EL+  I DLL LER+++EL E+ 
Sbjct: 77  AAAKAKAKVRKTYTEDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQL 136

Query: 333 GNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLV 392
              P+ A+WAAA        R+RL  G   KDKM++SN+RLV+SIAK Y   G++ QDL+
Sbjct: 137 DRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 196

Query: 393 QEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKE 452
           QEG  GL+R AEKFD  KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E   ++K+
Sbjct: 197 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKK 256

Query: 453 ARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISD 512
             K L    GR P +EEIA    +++++L  +  + + P SLE   G  ++ +  + I +
Sbjct: 257 TTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-E 316

Query: 513 PEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRE 572
            +  T ED + K  ++++LE VL +L+PRER ++R RYG++DGRMKTL+EIG++  V+RE
Sbjct: 317 ADGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRE 376

Query: 573 RIRQIELCAFRKLKNKKRTKHLQQYL 586
           RIRQIE  A RKL++  R   L++Y+
Sbjct: 377 RIRQIEAKALRKLRHPNRNSILKEYI 398

[Close]

BLAST of Carg11057 vs. ExPASy Swiss-Prot
Match: P52322 (RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 2.0e-64
Identity = 140/366 (38.25%), Postives = 218/366 (59.56%), Query Frame = 0


Query: 260 SSRKKRNSGQEVDY-NDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKEE---- 319
           +S ++R++ ++  Y  D +R         +LL A +E+EL+  I DLLKLER++E+    
Sbjct: 51  ASARRRDAARKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLY 110

Query: 320 ------------------LAERYGNEPTFA-----------------QWAAAAGVNQRTL 379
                             + E+   EP  +                 +W A +       
Sbjct: 111 SDAEWGKQVFLFERIEKIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAF 170

Query: 380 RKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGF 439
           ++RL +G   K+KM++SN+RLV+SIAK Y   G++ QDL+QEG  GL+R AEKFD  KG+
Sbjct: 171 KRRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGY 230

Query: 440 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAV 499
           KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E   ++K+  K L     R P +EEIA 
Sbjct: 231 KFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIAT 290

Query: 500 AAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELE 559
              +++++L  +  + + P SLE   G  ++ +  + I + +  T ED + K  ++++LE
Sbjct: 291 KMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLE 350

Query: 560 KVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTK 586
            VLD+L+PRER ++R RYG++DGRMKTL+EIG++  V+RERIRQIE  A RKL++  R  
Sbjct: 351 NVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNS 410

[Close]

BLAST of Carg11057 vs. ExPASy Swiss-Prot
Match: Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.3e-60
Identity = 146/391 (37.34%), Postives = 221/391 (56.52%), Query Frame = 0


Query: 194 VEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVV 253
           V+     PS    D +  TS  + L E    K   VRS RQ ER+A+  RA +       
Sbjct: 158 VDDTEANPSDNIKDSLS-TSSSMSLPE----KGNIVRSKRQLERRAKNRRAPKSNDVDDE 217

Query: 254 SLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKE 313
                 +S KK+   Q  D +D L+         +LLTA +E EL   IQ LLKLE++K 
Sbjct: 218 GYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKT 277

Query: 314 ELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGM 373
           +L  + G EPT  +WA A G++   L+  ++ G   ++K+I +N+RLV+ IAK YQ  G+
Sbjct: 278 KLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGL 337

Query: 374 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 433
           N QDL+QEG  GL++  EKF    G +F+TYA+WWI+Q++RKS+   SRTIRLP ++   
Sbjct: 338 NFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYML 397

Query: 434 TYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKP 493
             KV EARK         P+ EE+A   G+S ++L  +L   + P S++Q    +Q+   
Sbjct: 398 LGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTF 457

Query: 494 SEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEM 553
            E+  D    T    + KQ M+  +  +L+ L+P+ER+II+ R+G++ G+ ++L EIGE+
Sbjct: 458 QEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEI 517

Query: 554 MGVSRERIRQIELCAFRKLKNKKRTKHLQQY 585
            G+S+ER+RQ+E  A  +LK    +  L  Y
Sbjct: 518 YGLSKERVRQLESRALYRLKQNMNSHGLHAY 542

[Close]

BLAST of Carg11057 vs. ExPASy TrEMBL
Match: A0A6J1HL45 (RNA polymerase sigma factor sigB OS=Cucurbita moschata OX=3662 GN=LOC111464542 PE=3 SV=1)

HSP 1 Score: 1077.4 bits (2785), Expect = 0.0e+00
Identity = 579/589 (98.30%), Postives = 580/589 (98.47%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKTPA TI  TPTPTSSHHHTFLPTANSTYFK RDPHSLRTQ
Sbjct: 98  MSCLLPQFKCHPETFSIQFKTPASTI--TPTPTSSHHHTFLPTANSTYFKFRDPHSLRTQ 157

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTSEE 120
           CILSAASPPT TGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL  VESSLASTLLTSEE
Sbjct: 158 CILSAASPPTLTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEE 217

Query: 121 ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESE 180
           ATIAAAAAEAVALAKAAVKAANDAALLVNNSNS+RSVTKSQSSSRSNALHFKWDQFMESE
Sbjct: 218 ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSSRSVTKSQSSSRSNALHFKWDQFMESE 277

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERK
Sbjct: 278 RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERK 337

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
Sbjct: 338 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 397

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERLKEELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 398 SEGIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNI 457

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
Sbjct: 458 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 517

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP
Sbjct: 518 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 577

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG
Sbjct: 578 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 637

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 588
           MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
Sbjct: 638 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 684

[Close]

BLAST of Carg11057 vs. ExPASy TrEMBL
Match: A0A6J1KM29 (RNA polymerase sigma factor OS=Cucurbita maxima OX=3661 GN=LOC111494519 PE=3 SV=1)

HSP 1 Score: 1065.1 bits (2753), Expect = 1.1e-307
Identity = 576/589 (97.79%), Postives = 578/589 (98.13%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKTPAITI  TPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQ
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTPAITI--TPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQ 60

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTSEE 120
           CILSAA   TSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL  VESSLASTLLTSEE
Sbjct: 61  CILSAA---TSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYLGAVESSLASTLLTSEE 120

Query: 121 ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESE 180
           ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSS+SNALHFKWDQFMESE
Sbjct: 121 ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSKSNALHFKWDQFMESE 180

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELL+DEFSKSIAVRS RQTERK
Sbjct: 181 RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLQDEFSKSIAVRSNRQTERK 240

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL
Sbjct: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERLKEELA RYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 301 SEGIQDLLKLERLKEELAGRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNI 360

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
Sbjct: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLP DEEIAVAAGLSMKRLATVLMTPKAP
Sbjct: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPADEEIAVAAGLSMKRLATVLMTPKAP 480

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG
Sbjct: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 588
           MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP
Sbjct: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLMP 584

[Close]

BLAST of Carg11057 vs. ExPASy TrEMBL
Match: A0A6J1DSR7 (RNA polymerase sigma factor OS=Momordica charantia OX=3673 GN=LOC111022820 PE=3 SV=1)

HSP 1 Score: 948.7 bits (2451), Expect = 1.1e-272
Identity = 513/588 (87.24%), Postives = 544/588 (92.52%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKT AIT+  T T   SHHH FLPTANS+  KVRDPHSLRTQ
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTTAITV--TTTANYSHHHNFLPTANSSCTKVRDPHSLRTQ 60

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTSEE 120
           CILSAASP TSTGTATTFNV+RLKLPP D NTDS+SAERLRSYL  VESS ASTLLTSEE
Sbjct: 61  CILSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEE 120

Query: 121 ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESE 180
           ATIAAAAAEAV LAKAAVK A DAALLVNNSNS+++  KSQSSS+S+ALHFKWDQFMESE
Sbjct: 121 ATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESE 180

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIG PVGVNNRP EGDAL+  TAESD  +PT+EELELL+DE S +IAVRS RQTER+
Sbjct: 181 RADIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERR 240

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           A+RTRA+EK ATSVVS+KSGSSSRKKRNS QEVDY+DPLRYLRATTS S+LLTA++ELEL
Sbjct: 241 AKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELEL 300

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERL+EEL ERYG EPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 301 SEGIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNI 360

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
Sbjct: 361 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATY+VKEARKQLY+ NGR P+DEEIA AAGLSMKRLA VLMTPKAP
Sbjct: 421 DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAP 480

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQK GINQNLKPSEVISDPEA T+EDLLIKQFMKQ+LEKVLDSLNPRERQ+IRWR+G
Sbjct: 481 RSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFG 540

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 587
           MEDGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQYLM
Sbjct: 541 MEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM 585

[Close]

BLAST of Carg11057 vs. ExPASy TrEMBL
Match: A0A1S3CD00 (RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1)

HSP 1 Score: 947.2 bits (2447), Expect = 3.3e-272
Identity = 508/588 (86.39%), Postives = 539/588 (91.67%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKT A          +SHHH+F+PTA S+Y KVRDPHSLRTQ
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAA---------NNSHHHSFIPTAYSSYTKVRDPHSLRTQ 60

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTSEE 120
           CILSAASPPTSTGTATT NVDRLKLPPFDTNTDSVS ERLRSYL  VESSLASTLLTSEE
Sbjct: 61  CILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEE 120

Query: 121 ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESE 180
           ATIAAAAAEAV LAKAAVK A DAALL NN NS+R+ TKSQ S + +ALHFKW QFMESE
Sbjct: 121 ATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESE 180

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVN RP+EGDALEPST ESDD+EPTS+ELELL+DE S+SI V+S RQTERK
Sbjct: 181 RADIIGEPVGVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERK 240

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRA+EK  TSVV  KSGSSSRKKR+S QEVDY+DPLRYLRATTS S+LLTA++ELEL
Sbjct: 241 ARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELEL 300

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERL+EELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 301 SEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNI 360

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LS
Sbjct: 361 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLS 420

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATY+VKEARKQL + NGR P+D+EIA AAGLSMKRLA VLMTPKAP
Sbjct: 421 DQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAP 480

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQK GINQNLKPSEVISDPEA TAED+LIKQFMKQ+LEKVLDSLNPRE+Q+IRWR+G
Sbjct: 481 RSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFG 540

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 587
           MEDGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQYLM
Sbjct: 541 MEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM 579

[Close]

BLAST of Carg11057 vs. ExPASy TrEMBL
Match: A0A0A0K917 (RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G078550 PE=3 SV=1)

HSP 1 Score: 944.1 bits (2439), Expect = 2.8e-271
Identity = 507/588 (86.22%), Postives = 537/588 (91.33%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQ 60
           MSCLLPQFKCHPETFSIQFKT A           SHHH+FLPTA S+Y KVRDPHSLRTQ
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAA---------NYSHHHSFLPTAYSSYTKVRDPHSLRTQ 60

Query: 61  CILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSYL--VESSLASTLLTSEE 120
           CILSAASPPTSTGTATT +VDRLKLPPFDTNTDSVS ERLRSYL  VESSLASTLLTSEE
Sbjct: 61  CILSAASPPTSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEE 120

Query: 121 ATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFKWDQFMESE 180
           A+IAAAAAEAV LAKAAVK A DAALL NN NS+R+ TKSQSS + +ALHFKW QFMESE
Sbjct: 121 ASIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESE 180

Query: 181 RADIIGEPVGVNNRPVEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERK 240
           RADIIGEPVGVN RP+EGDALEPST ESDDMEPTSEELELL+DE S+SI V+S RQTERK
Sbjct: 181 RADIIGEPVGVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERK 240

Query: 241 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 300
           ARRTRA+EK  TSV+S KSGSSSRKKRNS QEVDY+DPLRYLRATT+ S+LLTA++ELEL
Sbjct: 241 ARRTRAAEKTVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELEL 300

Query: 301 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 360
           SEGIQDLLKLERL+EEL ERYGNEPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNI
Sbjct: 301 SEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNI 360

Query: 361 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 420
           RLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LS
Sbjct: 361 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLS 420

Query: 421 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 480
           DQSRTIRLPFHMVEATY+VKEARKQL   NGR P+D+EIA AAGLSMKRLA VLMTPKAP
Sbjct: 421 DQSRTIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAP 480

Query: 481 RSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYG 540
           RSLEQK GINQNLKPSEVISDPEA T ED+LIKQFMKQ+LEKVLDSLNPRE+Q+IRWR+G
Sbjct: 481 RSLEQKIGINQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFG 540

Query: 541 MEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 587
           MEDGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQY+M
Sbjct: 541 MEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVM 579

[Close]

BLAST of Carg11057 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 642.9 bits (1657), Expect = 2.5e-184
Identity = 372/600 (62.00%), Postives = 453/600 (75.50%), Query Frame = 0


Query: 2   SCLLPQFKCHPETFSIQFKTPAITITPTPTPTSSHHHTFLPTANSTYFKVRDPHSLRTQC 61
           SCLLPQFKC P++FSI F+T         +  +  H+       S +F        + QC
Sbjct: 3   SCLLPQFKCPPDSFSIHFRT---------SFCAPKHN-----KGSVFF--------QPQC 62

Query: 62  ILSAASPPTSTGTATTFNVDRLKLPPFDTNTDSVSAERLRSY-----------LVESSLA 121
            +S  SP   T   +  +V +L+LP FDT++DS+ ++R  +Y            +E+  +
Sbjct: 63  AVS-TSPALLT---SMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALAS 122

Query: 122 STLLTSEEATIAAAAAEAVALAKAAVKAANDAALLVNNSNSARSVTKSQSSSRSNALHFK 181
            TLLTS+EA + AAAAEAVALA+AAVK A DA L   NSN+   +T S +  RS     K
Sbjct: 123 ETLLTSDEAVVVAAAAEAVALARAAVKVAKDATLF-KNSNNTNLLTSSTADKRS-----K 182

Query: 182 WDQFMESERADIIGEPVGVNNRPVEGDALEPSTAESD---DME-PTSEELELLEDEFSKS 241
           WDQF E ERA I+G  + V++  +  D +  S +  +   D+E    EE+ELLE++ S S
Sbjct: 183 WDQFTEKERAGILGH-LAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVS 242

Query: 242 IAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSA 301
           +AVRS RQTERKARR +  EK A+ + S+K+GSS +KKR   QEVD+NDPLRYLR TTS+
Sbjct: 243 LAVRSTRQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSS 302

Query: 302 SKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYG 361
           SKLLT  +E ELS GIQDLLKLERL+ EL ER G +PTFAQWA+AAGV+Q++LR+R+++G
Sbjct: 303 SKLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHG 362

Query: 362 TCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH 421
           T CKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAH
Sbjct: 363 TLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAH 422

Query: 422 WWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMK 481
           WWIKQAVRKSLSDQSR IRLPFHMVEATY+VKEARKQLY+  G+ P +EEIA A GLSMK
Sbjct: 423 WWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMK 482

Query: 482 RLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDSLN 541
           RL  VL++PK PRSL+QK G+NQNLKPSEVI+DPEAVT+ED+LIK+FM+Q+L+KVLDSL 
Sbjct: 483 RLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLG 542

Query: 542 PRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 587
            RE+Q+IRWR+GMEDGRMKTLQEIGEMMGVSRER+RQIE  AFRKLKNKKR  HLQQYL+
Sbjct: 543 TREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]

BLAST of Carg11057 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 235.7 bits (600), Expect = 9.3e-62
Identity = 146/391 (37.34%), Postives = 221/391 (56.52%), Query Frame = 0


Query: 194 VEGDALEPSTAESDDMEPTSEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVV 253
           V+     PS    D +  TS  + L E    K   VRS RQ ER+A+  RA +       
Sbjct: 158 VDDTEANPSDNIKDSLS-TSSSMSLPE----KGNIVRSKRQLERRAKNRRAPKSNDVDDE 217

Query: 254 SLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKE 313
                 +S KK+   Q  D +D L+         +LLTA +E EL   IQ LLKLE++K 
Sbjct: 218 GYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKT 277

Query: 314 ELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGM 373
           +L  + G EPT  +WA A G++   L+  ++ G   ++K+I +N+RLV+ IAK YQ  G+
Sbjct: 278 KLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGL 337

Query: 374 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEA 433
           N QDL+QEG  GL++  EKF    G +F+TYA+WWI+Q++RKS+   SRTIRLP ++   
Sbjct: 338 NFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYML 397

Query: 434 TYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKP 493
             KV EARK         P+ EE+A   G+S ++L  +L   + P S++Q    +Q+   
Sbjct: 398 LGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTF 457

Query: 494 SEVISDPEAVTAEDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEM 553
            E+  D    T    + KQ M+  +  +L+ L+P+ER+II+ R+G++ G+ ++L EIGE+
Sbjct: 458 QEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEI 517

Query: 554 MGVSRERIRQIELCAFRKLKNKKRTKHLQQY 585
            G+S+ER+RQ+E  A  +LK    +  L  Y
Sbjct: 518 YGLSKERVRQLESRALYRLKQNMNSHGLHAY 542

[Close]

BLAST of Carg11057 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-51
Identity = 123/380 (32.37%), Postives = 225/380 (59.21%), Query Frame = 0


Query: 213 SEELELLEDEFSKSIAVRSIRQTERKARRTRASEKAATSVVSLKSGSSSRKK---RNSGQ 272
           S+  EL++   ++ + V S R+ ++KARR         S V+ ++G  S      R +  
Sbjct: 204 SDTTELVDTTPNQQVFVSSRRKVKKKARR---------SSVTAENGDQSSLPIGLRTTWN 263

Query: 273 EVD---YNDPLRYLRATTSASKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFA 332
            +D      P +Y +     S+     +E E+S G++ +  +ER++ +L E  G   + +
Sbjct: 264 NIDVPRVRRPPKYRKKRERISR-----NETEMSTGVKIVADMERIRTQLEEESGKVASLS 323

Query: 333 QWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGL 392
            WAAAAG+N++ L + L+YG  C+D+++KS   LV+ +A+NY+G G+  +DL+Q G  G+
Sbjct: 324 CWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGV 383

Query: 393 VRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYT 452
           ++GAE+FD ++G+KFSTY  +WI++++   +S  +R + +P  ++     +++ARK L T
Sbjct: 384 LQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKT 443

Query: 453 ANG-RLPNDEEIAVAAGLSMKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTA 512
           ++G +   DEEIA   G S+K++       K   S+++K G     K  E   D    + 
Sbjct: 444 SHGIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESP 503

Query: 513 EDLLIKQFMKQELEKVLDSLNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIE 572
           E+ +++Q  ++++  +L+ L PRE+Q++  RYG++D R K+L+EIG+++ VS+E IR+IE
Sbjct: 504 EEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIE 563

Query: 573 LCAFRKLKNKKRTKHLQQYL 586
             A  KL+++   + L+ YL
Sbjct: 564 RRAMAKLRDQPNAEDLRYYL 569

[Close]

BLAST of Carg11057 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 179.5 bits (454), Expect = 7.9e-45
Identity = 106/300 (35.33%), Postives = 173/300 (57.67%), Query Frame = 0


Query: 285 SASKLLTASDELELSEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLN 344
           S S  L+  +E++L   +++  KLE L   + E   NE      A+  G  +R+  + L 
Sbjct: 118 SRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEE---NEMVSVLLASGRGKKKRSANEILC 177

Query: 345 YGTCCKDKMIKSNIRLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 404
                ++K+ +   RLV+SIA  YQG G+NLQDL+QEG  GL+RGAE+FD  +G+K STY
Sbjct: 178 RRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTY 237

Query: 405 AHWWIKQAVRKSLSDQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLS 464
            +WWIKQA+ ++++ +SR ++LP  M E T KV EA   L     R P+ EEIA    L+
Sbjct: 238 VYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLN 297

Query: 465 MKRLATVLMTPKAPRSLEQKFGINQNLKPSEVISDPEAVTAEDLLIKQFMKQELEKVLDS 524
           +  +   +   ++P SL++    N  +   E++  P+    E+++ ++ MK E+E++L S
Sbjct: 298 VSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGS 357

Query: 525 LNPRERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQY 584
           L  RE +++   +G+      + +EIG+ + +SRER+RQI   A +KL+N      L+ Y
Sbjct: 358 LTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414

[Close]

BLAST of Carg11057 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 158.3 bits (399), Expect = 1.9e-38
Identity = 118/358 (32.96%), Postives = 195/358 (54.47%), Query Frame = 0


Query: 239 ARRTRASEKAATSVVSLKSGSSSRKKRNSGQEVDYNDPLRYLRATTSASKLLTASDELEL 298
           AR+ R   K  T++  +K+ S      +SG++V       Y++   S   +L+  + + L
Sbjct: 159 ARQRRIGAKKKTNMTHVKAVSDV----SSGKQV-----RGYVKGVIS-EDVLSHVEVVRL 218

Query: 299 SEGIQDLLKLERLKEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTCCKDKMIKSNI 358
           S+ I+  L+L+  K  L +R G EP+  Q A +  +++  L+  L      ++K+  SN+
Sbjct: 219 SKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNV 278

Query: 359 RLVISIAKNYQGGGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS 418
           RLV+SIA+ Y   G  + DLVQ G  GL+RG EKFD+SKGF+ STY +WWI+Q V ++L 
Sbjct: 279 RLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALV 338

Query: 419 DQSRTIRLPFHMVEATYKVKEARKQLYTANGRLPNDEEIAVAAGLSMKRLATVLMTPKAP 478
           D SRT+RLP H+ E    ++ A+ +L    G  P+ + IA +  +S K++          
Sbjct: 339 DNSRTLRLPTHLHERLGLIRNAKLRL-QEKGITPSIDRIAESLNMSQKKVRNATEAVSKV 398

Query: 479 RSLEQKFGINQNLKPSEVISDPEAVTA---------EDLLIKQFMKQELEKVLD-SLNPR 538
            SL++    + N  P E      A T          +DL     +K+E+ K++  +L  R
Sbjct: 399 FSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLGER 458

Query: 539 ERQIIRWRYGMEDGRMKTLQEIGEMMGVSRERIRQIELCAFRKLKNKKRTKHLQQYLM 587
           E++IIR  YG+ D    T ++I + +G+SRER+RQ+ L A  KLK+  R + ++  ++
Sbjct: 459 EKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMIL 500

The following BLAST results are available for this feature:

BLAST of Carg11057 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593746.1	0.0e+00	99.49	RNA polymerase sigma factor sigB, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_023515004.1	0.0e+00	99.15	RNA polymerase sigma factor sigB [Cucurbita pepo subsp. pepo]	[more]
XP_022964550.1	0.0e+00	98.30	RNA polymerase sigma factor sigB [Cucurbita moschata]	[more]
XP_023000238.1	2.2e-307	97.79	RNA polymerase sigma factor sigB [Cucurbita maxima]	[more]
XP_038875580.1	2.0e-276	88.10	RNA polymerase sigma factor sigB isoform X1 [Benincasa hispida]	[more]

BLAST of Carg11057 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22056	3.6e-183	62.00	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]
P26683	1.0e-73	43.98	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
P38023	3.4e-69	40.16	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
P52322	2.0e-64	38.25	RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 ...	[more]
Q9LD95	1.3e-60	37.34	RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Carg11057 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HL45	0.0e+00	98.30	RNA polymerase sigma factor sigB OS=Cucurbita moschata OX=3662 GN=LOC111464542 P...	[more]
A0A6J1KM29	1.1e-307	97.79	RNA polymerase sigma factor OS=Cucurbita maxima OX=3661 GN=LOC111494519 PE=3 SV=...	[more]
A0A6J1DSR7	1.1e-272	87.24	RNA polymerase sigma factor OS=Momordica charantia OX=3673 GN=LOC111022820 PE=3 ...	[more]
A0A1S3CD00	3.3e-272	86.39	RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1	[more]
A0A0A0K917	2.8e-271	86.22	RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G078550 PE=3 SV=1	[more]

BLAST of Carg11057 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08540.1	2.5e-184	62.00	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	9.3e-62	37.34	RNApolymerase sigma-subunit F	[more]
AT3G53920.1	1.9e-51	32.37	RNApolymerase sigma-subunit C	[more]
AT5G13730.1	7.9e-45	35.33	sigma factor 4	[more]
AT1G64860.1	1.9e-38	32.96	sigma factor A	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 298..318
None	No IPR available	GENE3D	1.10.601.10	RNA Polymerase Primary Sigma Factor	coord: 97..425 e-value: 1.3E-38 score: 135.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 234..272
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..214
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 247..262
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 48..586
None	No IPR available	PANTHER	PTHR30603:SF57	RNA POLYMERASE SIGMA FACTOR SIGB	coord: 48..586
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 515..573 e-value: 1.22553E-13 score: 63.6626
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 525..537 score: 42.68 coord: 401..409 score: 82.44 coord: 561..572 score: 58.33 coord: 377..390 score: 52.4 coord: 546..561 score: 54.84
IPR000943	RNA polymerase sigma-70	PROSITE	PS00716	SIGMA70_2	coord: 546..572
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 521..573 e-value: 8.9E-20 score: 70.0
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 353..422 e-value: 2.8E-18 score: 65.4
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 509..587 e-value: 8.1E-28 score: 97.9
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 426..502 e-value: 5.8E-12 score: 47.8
IPR016262	RNA polymerase sigma factor, SigB/C/D/F, plastid	PIRSF	PIRSF000767	Sigma_factor_SigC	coord: 1..587 e-value: 3.2E-185 score: 615.2
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 432..507 e-value: 1.7E-14 score: 53.6
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 351..575 e-value: 6.8E-33 score: 111.6
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 274..423
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 485..584
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 421..472

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11057-RA	Carg11057-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity