Carg11056 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11056
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	chromo domain-containing protein LHP1-like
Location	Carg_Chr08: 5812971 .. 5815400 (+)
RNA-Seq Expression	Carg11056
Synteny	Carg11056

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATCAAAGGGAGTGGAAGGAAGAAAAGTGCGAGCGGTTCAACGGTGGCCATGGATGGTGGTGAAGTCGTCCATGGAGGCGACTCGGATTATGCTAATATGAACAGCAACAACAACAACGCCATTATTAGCGTTGAGCCTTCGACTTCACATTTATCGAAGACCCATCAAGAACAAAACCTAGGAGAGCTTGATGACGGCGGCGATGGGGAGGAAGAAGATGAACACGACGGCGATGAGGCTGATTTTGCTGCTCAGAGAACCAATCTCGATGATGGGTTCTATGAAATTGAAGCAATTCGTCGAAAAAGAGTTCGTAAGGTGTTCTTATTTTCGATTCTCTTTGTGTTTAGGTCTTCTGATTTGTTTGAATTGTATGAATGATGGGTTTATGAATGTTTGTTCATTTACTGATTTCGGGGGTTTCTTTGCTGTGGGGATATGATTGATTCAAAACACAGGGACAGCTTCAGTACTTGATCAAATGGTAAGACATAGCTGCACCTCTTTGTTGTGTTTGGTTGTCTTGGTTTCTTAGAGCTTGACTATGGGTACTCAAATTACTGACCAAACTGAGCTTTCCTAAAGGCGAGGCTGGCCGGAGACGGCTAATACTTGGGAGCCCTTGGAGAATCTCCATACGTGCTCCGATTTCATCGACGCGTTTGAACGGAGGTATTCTCGTCTACTTCGATCAGTATCTTTTGTTGGTAGCTAGAGTAAGCATTCATTGACATGTGCTGCTGATTGCTGTGATGGTTTCTTGTGAAGTTTAAGGTATAATGTTGTTGAAATTCGGTTTTGTTTTCGAAGTTTAATGACAGGAAAGCAACGGAAGCGAAAGAGAAAACATGGGGTTGTTCATAATCAGACCAAGAAAAGGCAGCAGGGAGCTAACTTTTCTACTTACAATGTCACAGATGTTGAAATCAGTGTTCTTGATCAACGTCTGCCGTCTGCTCCGATAAACATGTCTAGCCTTACTCATCATTACGCTCATTCGCAAGCGATAGTTTGTAATCACGAAGGAGATAAGAATGGAGATGTAATAGCTCTTGAAAGAGGCAAGAAAATCGATATTGATAACGTGGGGAAGAATGCTACTCAACGAAAGAAAGATGAACATGAGTATGATCCGAAACTTAGTGAGCTTAAGGCAACAGTATTAACGAACGTAGCCATTGGCGATAAGCTTGCAGTCAATTTTCAAGAAGCGAGGACGACGGATAACAATGGCCTGGCAGCTAGTCTTTCTAAAAGTGGCACTGTGGAAGCAACCGCTGACAATCGGTGCATTGGGGCTAAGAGAAGGAAGTCGGGTTCGGTTAAAAGGTTTAGACAAGATTCAACTTTATCTGAACTACCTGTGGCTCAAAATGCAGAATTGACATTGGCTGTAGTAGAATCCGGTGCGCAAGTAGAACCGATTGGGGTCGAGAATTCTGGATATCGTGGGGAAAGTTTCATTCGCAATAACAACACCGATGACGCCAGAAACGAGCTGCGTATCATCAAGATTATCAAACCGTTAGGCTATTCTGCATCTGTGTCGAACAACATTCAGGACGTGTTGGTAATGTTTGTGGCCATGAGGTATGTCAGCTTTGTCTTACCTTTTGGTTTATGGTTAATCTAAGTCTGTGACAATATCATACCATTGTGGAGATTCGTGGTTCCGAACGTGGAGCCATGTTCTTAACGTAGTCATGTCAATAGAATCCTCAAATATCGAACAAAGAAGTTATGAGCTTCAAAGGTGTAGTCAAAAAGTGACTCAAAGTGTCGAACAAAGGGTATACTTTTTTCGAGGGCTCCTAAGAAAGGAGTCGAACCTTAATTAAGGGGAGGTTGTTCGAGGGCGCTATAGGCCTCAAGAGAGGCTCTATGGTGTATTTTGTTCGAGGGGAGGATTGTGTGAGGGAAAGAGTCCCACAAGTGAACCTCGTCTCGGTCTATTTCATATTCCCAAATGACATTTTTTGTAACGATTTCTTTGTTTTAGGTCTGATGGAACCGAAGTGATGGTCGATAACAAGTTCCTCAAGGCTAATAATCCGCTACTGGTAACGGGTTCAATTCTTCACTTTATTACGCTTTTGAACTTCCTTAAACAATGCTCAATTGTTTTTCCTTCTATTCTAACTGTTGTGTTAACTAATACCAGTTGATCAACTTCTACGAGCAACATCTCCGCTATACGACTAGATCATGAATGGCAAAACGAACGAACGGTACGACTTTTGGGATCCCGTCTTTGTTATTTCTTTATATTTTCGTGCATTTCTACTGCCTCTTGGTGCGCATGATCGAGTATAAGGATATGGTTAAACAAGGTCTATACGTTTTTCTTATCAATAACAGTATCCTCCACCGTGGTCACGTCTCCTTCTTGCTGTGAAGAAACGAGATAAGAAGTTCGAGGCTTAG

mRNA sequence

ATGAAAATCAAAGGGAGTGGAAGGAAGAAAAGTGCGAGCGGTTCAACGGTGGCCATGGATGGTGGTGAAGTCGTCCATGGAGGCGACTCGGATTATGCTAATATGAACAGCAACAACAACAACGCCATTATTAGCGTTGAGCCTTCGACTTCACATTTATCGAAGACCCATCAAGAACAAAACCTAGGAGAGCTTGATGACGGCGGCGATGGGGAGGAAGAAGATGAACACGACGGCGATGAGGCTGATTTTGCTGCTCAGAGAACCAATCTCGATGATGGGTTCTATGAAATTGAAGCAATTCGTCGAAAAAGAGTTCGTAAGGGACAGCTTCAGTACTTGATCAAATGGCGAGGCTGGCCGGAGACGGCTAATACTTGGGAGCCCTTGGAGAATCTCCATACGTGCTCCGATTTCATCGACGCGTTTGAACGGAGTTTAATGACAGGAAAGCAACGGAAGCGAAAGAGAAAACATGGGGTTGTTCATAATCAGACCAAGAAAAGGCAGCAGGGAGCTAACTTTTCTACTTACAATGTCACAGATGTTGAAATCAGTGTTCTTGATCAACGTCTGCCGTCTGCTCCGATAAACATGTCTAGCCTTACTCATCATTACGCTCATTCGCAAGCGATAGTTTGTAATCACGAAGGAGATAAGAATGGAGATGTAATAGCTCTTGAAAGAGGCAAGAAAATCGATATTGATAACGTGGGGAAGAATGCTACTCAACGAAAGAAAGATGAACATGAGTATGATCCGAAACTTAGTGAGCTTAAGGCAACAGTATTAACGAACGTAGCCATTGGCGATAAGCTTGCAGTCAATTTTCAAGAAGCGAGGACGACGGATAACAATGGCCTGGCAGCTAGTCTTTCTAAAAGTGGCACTGTGGAAGCAACCGCTGACAATCGGTGCATTGGGGCTAAGAGAAGGAAGTCGGGTTCGGTTAAAAGGTTTAGACAAGATTCAACTTTATCTGAACTACCTGTGGCTCAAAATGCAGAATTGACATTGGCTGTAGTAGAATCCGGTGCGCAAGTAGAACCGATTGGGGTCGAGAATTCTGGATATCGTGGGGAAAGTTTCATTCGCAATAACAACACCGATGACGCCAGAAACGAGCTGCGTATCATCAAGATTATCAAACCGTTAGGCTATTCTGCATCTGTGTCGAACAACATTCAGGACTATCCTCCACCGTGGTCACGTCTCCTTCTTGCTGTGAAGAAACGAGATAAGAAGTTCGAGGCTTAG

Coding sequence (CDS)

ATGAAAATCAAAGGGAGTGGAAGGAAGAAAAGTGCGAGCGGTTCAACGGTGGCCATGGATGGTGGTGAAGTCGTCCATGGAGGCGACTCGGATTATGCTAATATGAACAGCAACAACAACAACGCCATTATTAGCGTTGAGCCTTCGACTTCACATTTATCGAAGACCCATCAAGAACAAAACCTAGGAGAGCTTGATGACGGCGGCGATGGGGAGGAAGAAGATGAACACGACGGCGATGAGGCTGATTTTGCTGCTCAGAGAACCAATCTCGATGATGGGTTCTATGAAATTGAAGCAATTCGTCGAAAAAGAGTTCGTAAGGGACAGCTTCAGTACTTGATCAAATGGCGAGGCTGGCCGGAGACGGCTAATACTTGGGAGCCCTTGGAGAATCTCCATACGTGCTCCGATTTCATCGACGCGTTTGAACGGAGTTTAATGACAGGAAAGCAACGGAAGCGAAAGAGAAAACATGGGGTTGTTCATAATCAGACCAAGAAAAGGCAGCAGGGAGCTAACTTTTCTACTTACAATGTCACAGATGTTGAAATCAGTGTTCTTGATCAACGTCTGCCGTCTGCTCCGATAAACATGTCTAGCCTTACTCATCATTACGCTCATTCGCAAGCGATAGTTTGTAATCACGAAGGAGATAAGAATGGAGATGTAATAGCTCTTGAAAGAGGCAAGAAAATCGATATTGATAACGTGGGGAAGAATGCTACTCAACGAAAGAAAGATGAACATGAGTATGATCCGAAACTTAGTGAGCTTAAGGCAACAGTATTAACGAACGTAGCCATTGGCGATAAGCTTGCAGTCAATTTTCAAGAAGCGAGGACGACGGATAACAATGGCCTGGCAGCTAGTCTTTCTAAAAGTGGCACTGTGGAAGCAACCGCTGACAATCGGTGCATTGGGGCTAAGAGAAGGAAGTCGGGTTCGGTTAAAAGGTTTAGACAAGATTCAACTTTATCTGAACTACCTGTGGCTCAAAATGCAGAATTGACATTGGCTGTAGTAGAATCCGGTGCGCAAGTAGAACCGATTGGGGTCGAGAATTCTGGATATCGTGGGGAAAGTTTCATTCGCAATAACAACACCGATGACGCCAGAAACGAGCTGCGTATCATCAAGATTATCAAACCGTTAGGCTATTCTGCATCTGTGTCGAACAACATTCAGGACTATCCTCCACCGTGGTCACGTCTCCTTCTTGCTGTGAAGAAACGAGATAAGAAGTTCGAGGCTTAG

Protein sequence

MKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNSNNNNAIISVEPSTSHLSKTHQEQNLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIKWRGWPETANTWEPLENLHTCSDFIDAFERSLMTGKQRKRKRKHGVVHNQTKKRQQGANFSTYNVTDVEISVLDQRLPSAPINMSSLTHHYAHSQAIVCNHEGDKNGDVIALERGKKIDIDNVGKNATQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTTDNNGLAASLSKSGTVEATADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIGVENSGYRGESFIRNNNTDDARNELRIIKIIKPLGYSASVSNNIQDYPPPWSRLLLAVKKRDKKFEA

Homology

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BLAST of Carg11056 vs. NCBI nr
Match: KAG7026079.1 (Chromo domain-containing protein LHP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 815.5 bits (2105), Expect = 2.2e-232
Identity = 418/418 (100.00%), Postives = 418/418 (100.00%), Query Frame = 0


Query: 1   MKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNSNNNNAIISVEPSTSHLSKTHQEQ 60
           MKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNSNNNNAIISVEPSTSHLSKTHQEQ
Sbjct: 1   MKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNSNNNNAIISVEPSTSHLSKTHQEQ 60

Query: 61  NLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIKWRGW 120
           NLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIKWRGW
Sbjct: 61  NLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIKWRGW 120

Query: 121 PETANTWEPLENLHTCSDFIDAFERSLMTGKQRKRKRKHGVVHNQTKKRQQGANFSTYNV 180
           PETANTWEPLENLHTCSDFIDAFERSLMTGKQRKRKRKHGVVHNQTKKRQQGANFSTYNV
Sbjct: 121 PETANTWEPLENLHTCSDFIDAFERSLMTGKQRKRKRKHGVVHNQTKKRQQGANFSTYNV 180

Query: 181 TDVEISVLDQRLPSAPINMSSLTHHYAHSQAIVCNHEGDKNGDVIALERGKKIDIDNVGK 240
           TDVEISVLDQRLPSAPINMSSLTHHYAHSQAIVCNHEGDKNGDVIALERGKKIDIDNVGK
Sbjct: 181 TDVEISVLDQRLPSAPINMSSLTHHYAHSQAIVCNHEGDKNGDVIALERGKKIDIDNVGK 240

Query: 241 NATQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTTDNNGLAASLSKSGTVEA 300
           NATQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTTDNNGLAASLSKSGTVEA
Sbjct: 241 NATQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTTDNNGLAASLSKSGTVEA 300

Query: 301 TADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIGVENSGYRG 360
           TADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIGVENSGYRG
Sbjct: 301 TADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIGVENSGYRG 360

Query: 361 ESFIRNNNTDDARNELRIIKIIKPLGYSASVSNNIQDYPPPWSRLLLAVKKRDKKFEA 419
           ESFIRNNNTDDARNELRIIKIIKPLGYSASVSNNIQDYPPPWSRLLLAVKKRDKKFEA
Sbjct: 361 ESFIRNNNTDDARNELRIIKIIKPLGYSASVSNNIQDYPPPWSRLLLAVKKRDKKFEA 418

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BLAST of Carg11056 vs. NCBI nr
Match: XP_023514742.1 (chromo domain-containing protein LHP1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 755.7 bits (1950), Expect = 2.0e-214
Identity = 389/397 (97.98%), Postives = 391/397 (98.49%), Query Frame = 0


Query: 1   MKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNSNNNNAIISVEPSTSHLSKTHQEQ 60
           MKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNSNNNNAIISVEPSTSHLSKTHQEQ
Sbjct: 1   MKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNSNNNNAIISVEPSTSHLSKTHQEQ 60

Query: 61  NLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIKWRGW 120
           NLGELDDGGDGEEEDEHDGDEADF+AQRTNLDDGFYEIEAIRRKRVRKGQLQYLIKWRGW
Sbjct: 61  NLGELDDGGDGEEEDEHDGDEADFSAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIKWRGW 120

Query: 121 PETANTWEPLENLHTCSDFIDAFERSLMTGKQRKRKRKHGVVHNQTKKRQQGANFSTYNV 180
           PETANTWEPLENLHTCSDFIDAFERSLMTGKQRKRKRKHGVVH QTKKRQQGANFSTYNV
Sbjct: 121 PETANTWEPLENLHTCSDFIDAFERSLMTGKQRKRKRKHGVVHTQTKKRQQGANFSTYNV 180

Query: 181 TDVEISVLDQRLPSAPINMSSLTHHYAHSQAIVCNHEGDKNGDVIALERGKKIDIDNVGK 240
           TDVEISVLDQRLPSAPINM+SLTHHYAHSQAIVCNHEGDKNGDVIALERGKKIDIDNVGK
Sbjct: 181 TDVEISVLDQRLPSAPINMASLTHHYAHSQAIVCNHEGDKNGDVIALERGKKIDIDNVGK 240

Query: 241 NATQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTTDNNGLAASLSKSGTVEA 300
           NATQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEART DNNG AASLSKSGTVEA
Sbjct: 241 NATQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTMDNNGPAASLSKSGTVEA 300

Query: 301 TADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIGVENSGYRG 360
           TADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIGVENSGY G
Sbjct: 301 TADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIGVENSGYHG 360

Query: 361 ESFIRNNNTDDARNELRIIKIIKPLGYSASVSNNIQD 398
           E FIRNN TDDARNELRIIKIIKPLGYSASVSNNIQD
Sbjct: 361 EGFIRNNKTDDARNELRIIKIIKPLGYSASVSNNIQD 397

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BLAST of Carg11056 vs. NCBI nr
Match: XP_022964471.1 (chromo domain-containing protein LHP1-like [Cucurbita moschata])

HSP 1 Score: 751.9 bits (1940), Expect = 2.9e-213
Identity = 392/401 (97.76%), Postives = 393/401 (98.00%), Query Frame = 0


Query: 1   MKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNS----NNNNAIISVEPSTSHLSKT 60
           MKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNS    NNNNAIISVEPSTSHLSKT
Sbjct: 1   MKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNSNNNNNNNNAIISVEPSTSHLSKT 60

Query: 61  HQEQNLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIK 120
           HQEQNLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIK
Sbjct: 61  HQEQNLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIK 120

Query: 121 WRGWPETANTWEPLENLHTCSDFIDAFERSLMTGKQRKRKRKHGVVHNQTKKRQQGANFS 180
           WRGWPETANTWEPLENLHTCSDFIDAFERSLMTGKQRKRKRKHGVVH QTKKRQQGANFS
Sbjct: 121 WRGWPETANTWEPLENLHTCSDFIDAFERSLMTGKQRKRKRKHGVVHTQTKKRQQGANFS 180

Query: 181 TYNVTDVEISVLDQRLPSAPINMSSLTHHYAHSQAIVCNHEGDKNGDVIALERGKKIDID 240
           TYNVTDVEISVLDQRLPSAPINMSSLTHHYAHSQAIVCNHEGDKNGDVIALERGKKIDID
Sbjct: 181 TYNVTDVEISVLDQRLPSAPINMSSLTHHYAHSQAIVCNHEGDKNGDVIALERGKKIDID 240

Query: 241 NVGKNATQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTTDNNGLAASLSKSG 300
           NVGKNATQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTTDNNG AA LSKSG
Sbjct: 241 NVGKNATQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTTDNNGPAA-LSKSG 300

Query: 301 TVEATADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIGVENS 360
           TVEATADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIG+ENS
Sbjct: 301 TVEATADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIGIENS 360

Query: 361 GYRGESFIRNNNTDDARNELRIIKIIKPLGYSASVSNNIQD 398
           GYRGESFIRNN TDDARNELRIIKIIKPLGYSASVSNNIQD
Sbjct: 361 GYRGESFIRNNKTDDARNELRIIKIIKPLGYSASVSNNIQD 400

[Close]

BLAST of Carg11056 vs. NCBI nr
Match: XP_022999903.1 (chromo domain-containing protein LHP1-like [Cucurbita maxima])

HSP 1 Score: 739.2 bits (1907), Expect = 2.0e-209
Identity = 383/401 (95.51%), Postives = 388/401 (96.76%), Query Frame = 0


Query: 1   MKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNS----NNNNAIISVEPSTSHLSKT 60
           MKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNS    NNN+AIISVEPSTSHLSKT
Sbjct: 1   MKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNSSSNNNNNDAIISVEPSTSHLSKT 60

Query: 61  HQEQNLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIK 120
           HQEQNLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIK
Sbjct: 61  HQEQNLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIK 120

Query: 121 WRGWPETANTWEPLENLHTCSDFIDAFERSLMTGKQRKRKRKHGVVHNQTKKRQQGANFS 180
           WRGWPETANTWEPLENLHTCSDFIDAFERSL TGKQRKRKRKHGVVH QTKKRQQGANFS
Sbjct: 121 WRGWPETANTWEPLENLHTCSDFIDAFERSLTTGKQRKRKRKHGVVHTQTKKRQQGANFS 180

Query: 181 TYNVTDVEISVLDQRLPSAPINMSSLTHHYAHSQAIVCNHEGDKNGDVIALERGKKIDID 240
           TYNVTDVEISVLDQRLPSAPINMSSLTHHY HSQ+IVCNHEGDKNGD+IALERGKKI+ID
Sbjct: 181 TYNVTDVEISVLDQRLPSAPINMSSLTHHYTHSQSIVCNHEGDKNGDLIALERGKKINID 240

Query: 241 NVGKNATQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTTDNNGLAASLSKSG 300
           NVGKN TQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEART DNNG AASLSKSG
Sbjct: 241 NVGKNTTQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTMDNNGPAASLSKSG 300

Query: 301 TVEATADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIGVENS 360
           TVEATADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIGVENS
Sbjct: 301 TVEATADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIGVENS 360

Query: 361 GYRGESFIRNNNTDDARNELRIIKIIKPLGYSASVSNNIQD 398
           GY GE FIRNN TD+ARNELRIIKIIKPLGYSASVSNNIQD
Sbjct: 361 GYHGEGFIRNNKTDEARNELRIIKIIKPLGYSASVSNNIQD 401

[Close]

BLAST of Carg11056 vs. NCBI nr
Match: KAG6593747.1 (Chromo domain-containing protein LHP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 712.6 bits (1838), Expect = 2.0e-201
Identity = 373/397 (93.95%), Postives = 373/397 (93.95%), Query Frame = 0


Query: 1   MKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNSNNNNAIISVEPSTSHLSKTHQEQ 60
           MKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNSNNNNAIISVEPSTSHLSKTHQEQ
Sbjct: 1   MKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNSNNNNAIISVEPSTSHLSKTHQEQ 60

Query: 61  NLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIKWRGW 120
           NLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIKWRGW
Sbjct: 61  NLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIKWRGW 120

Query: 121 PETANTWEPLENLHTCSDFIDAFERSLMTGKQRKRKRKHGVVHNQTKKRQQGANFSTYNV 180
           PETANTWEPLENLHTCSDFIDAFERSLMTGKQRKRKRKHGVVHNQTKKRQQGANFSTYNV
Sbjct: 121 PETANTWEPLENLHTCSDFIDAFERSLMTGKQRKRKRKHGVVHNQTKKRQQGANFSTYNV 180

Query: 181 TDVEISVLDQRLPSAPINMSSLTHHYAHSQAIVCNHEGDKNGDVIALERGKKIDIDNVGK 240
           TDVEISVLDQRLPSAPINMSSLTHHYAHSQAIVCNHEGDKNGD                 
Sbjct: 181 TDVEISVLDQRLPSAPINMSSLTHHYAHSQAIVCNHEGDKNGD----------------- 240

Query: 241 NATQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTTDNNGLAASLSKSGTVEA 300
                 KDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTTDNNG AASLSKSGTVEA
Sbjct: 241 ------KDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTTDNNGPAASLSKSGTVEA 300

Query: 301 TADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIGVENSGYRG 360
           TADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIGVENSGYRG
Sbjct: 301 TADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIGVENSGYRG 360

Query: 361 ESFIRNNNTDDARNELRIIKIIKPLGYSASVSNNIQD 398
           ESFIRNNNTDDARNELRIIKIIKPLGYSASVSNNIQD
Sbjct: 361 ESFIRNNNTDDARNELRIIKIIKPLGYSASVSNNIQD 374

[Close]

BLAST of Carg11056 vs. ExPASy Swiss-Prot
Match: Q946J8 (Chromo domain-containing protein LHP1 OS=Arabidopsis thaliana OX=3702 GN=LHP1 PE=1 SV=2)

HSP 1 Score: 193.0 bits (489), Expect = 6.9e-48
Identity = 152/404 (37.62%), Postives = 211/404 (52.23%), Query Frame = 0


Query: 5   GSGRKKSASGSTVAMDGGEVVHGGDSDYANMNSNNNNAIISVEPSTSHLSKTHQEQNLGE 64
           G  RK S  G   + DGG    GG  +         + +  +           +E+   +
Sbjct: 29  GESRKISGDGGFGSDDGGGGGGGGSGE---------SILREIGDDRPTEDGDEEEEEDED 88

Query: 65  LDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIKWRGWPETA 124
            DDGGD EE++E +G+      +R  LD+GFYEIEAIRRKRVRKG++QYLIKWRGWPETA
Sbjct: 89  EDDGGD-EEDEEGEGEGGQ--EERPKLDEGFYEIEAIRRKRVRKGKVQYLIKWRGWPETA 148

Query: 125 NTWEPLENLHTCSDFIDAFERSLMTGKQ-RKRKRKHGVVHNQTKKRQQ--GANFSTYNVT 184
           NTWEPLENL + +D IDAFE SL  GK  RKRKRK+   H+Q KK+Q+    +      +
Sbjct: 149 NTWEPLENLQSIADVIDAFEGSLKPGKPGRKRKRKYAGPHSQMKKKQRLTSTSHDATEKS 208

Query: 185 DVEISVLDQRLPSAP----INMSSLTHHYAHSQAIVCNHEGDKNGDVIALERGKKIDIDN 244
           D   S+ +  LP  P    ++ SSL +    ++    +++ + N   + + R  ++ IDN
Sbjct: 209 DSSTSLNNSSLPDIPDPLDLSGSSLLNRDVEAKNAYVSNQVEANSGSVGMARQVRL-IDN 268

Query: 245 VGKNATQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNF-QEARTTDNNGLAASLSKSG 304
                      E EYDP L+EL+  V  +   G         E      NGL     K  
Sbjct: 269 -----------EKEYDPTLNELRGPVNNSNGAGCSQGGGIGSEGDNVRPNGLLKVYPK-- 328

Query: 305 TVEATADNRCIGAKRRKSGSVKRFRQDSTLSE---LPVAQNAELTLAVVESGAQVEPIGV 364
             E   ++R IGAKRRKSGSVKRF+QD + S     P  QN    L  ++S  ++  +G 
Sbjct: 329 --ELDKNSRFIGAKRRKSGSVKRFKQDGSTSNNHTAPTDQNLTPDLTTLDSFGRIARMGN 388

Query: 365 ENSGYRGESFIRNNNTDDARNELRIIKIIKPLGYSASVSNNIQD 398
           E   Y G     N +      EL I KI+KP+ ++ASVS+N+Q+
Sbjct: 389 E---YPGVMENCNLSQKTKIEELDITKILKPMSFTASVSDNVQE 401

[Close]

BLAST of Carg11056 vs. ExPASy Swiss-Prot
Match: Q944N1 (Chromo domain protein LHP1 OS=Solanum lycopersicum OX=4081 GN=LHP1 PE=1 SV=2)

HSP 1 Score: 158.7 bits (400), Expect = 1.4e-37
Identity = 121/358 (33.80%), Postives = 182/358 (50.84%), Query Frame = 0


Query: 54  SKTHQEQNLGELDDGGDGEEEDE-------HDGDEADFAAQ-RTNLDDGFYEIEAIRRKR 113
           SK  +E   GE +  G+GEE+DE         GD    A + +  L +GFYEIE +RR+R
Sbjct: 45  SKCEEEPVAGEGE--GEGEEKDEAPEVVRVEKGDGDGVAKKVKPKLAEGFYEIETVRRRR 104

Query: 114 VRKGQLQYLIKWRGWPETANTWEPLENLHTCSDFIDAFERSLMTGKQRKRKRKHGVVHNQ 173
             KG++ YLIKWRGWPE+ANTWEP  NL +C+D IDA+E SL +GK R+RKRK G     
Sbjct: 105 TVKGKVYYLIKWRGWPESANTWEPETNLSSCTDIIDAYEESLKSGKLRRRKRKFGATQTH 164

Query: 174 TKKRQQ---GANFSTYNVTDVEISVLDQRLPSAPINMSSLTHHYAHSQAIVCNHEGDKNG 233
              +QQ    A  +TYN   V++ ++++  PS P+N+   T               D NG
Sbjct: 165 PMIKQQRRFSAPVATYNGPAVKVRIIEEPTPSPPLNVLKATDLV------------DSNG 224

Query: 234 DVIALERGKKIDIDNVGKNATQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEART 293
             +         +D V      R ++++E + KLSELK    TN   G+ + ++      
Sbjct: 225 SEL------NSKVDEVVNGNGLRLREQNELNLKLSELKGATSTN---GNPVDIS------ 284

Query: 294 TDNNGLAASLSKSGTVEATADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVV 353
              NGL     K    E    +RC GAK+RKSG V+RF++++T +     Q+A       
Sbjct: 285 --GNGLTNGFPKVNGAEFYQSDRCTGAKKRKSGCVRRFKRETTSAVKDDTQDA------- 344

Query: 354 ESGAQVEPIGVENSGYRGESFIRNNN---TDDARNELRIIKIIKPLGYSASVSNNIQD 398
            +G  +     + S         +N+    DD+++   I +++ P+ Y AS SN++ D
Sbjct: 345 LAGGPLATFMQDGS---------HNHVMVADDSKDGYTITQLVNPVSYKASFSNDMLD 355

[Close]

BLAST of Carg11056 vs. ExPASy Swiss-Prot
Match: Q339W7 (Probable chromo domain-containing protein LHP1 OS=Oryza sativa subsp. japonica OX=39947 GN=LHP1 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.2e-25
Identity = 116/399 (29.07%), Postives = 178/399 (44.61%), Query Frame = 0


Query: 28  GDSDYANMNSNNNNAIISVEPSTSHLSKTHQEQNLGELDDGGDGEEEDEHD-------GD 87
           G+ + A   +    A + ++       +  +EQ  GE ++  +GEEE+E +       G+
Sbjct: 10  GEEEEAPAAAGEEEAPVEMDEEGEMEEEEEEEQGEGEGEERDEGEEEEEWEDAEEVEGGE 69

Query: 88  EADFAAQR----------------------TNLDDGFYEIEAIRRKRVRKGQLQYLIKWR 147
           E++ AA                          L +G+YEIE IRR+R+RKG+LQYL+KWR
Sbjct: 70  ESEQAAAEEEDSPLVVVEAEAAAPVVDGSPPKLAEGYYEIEDIRRRRLRKGKLQYLVKWR 129

Query: 148 GWPETANTWEPLENLHTCSDFIDAFERSLMTGKQ-RKRKRKHGVVHNQTKKRQQGANFST 207
           GWPE+ANTWEPLENL  CSD IDAFE  L + +  RKRKRK       T     G+N S 
Sbjct: 130 GWPESANTWEPLENLSACSDIIDAFEMRLQSPRPGRKRKRK------ITTTPVAGSNPSH 189

Query: 208 YNVTDVEISVLDQRLPSAPINMSSLTHHYAHSQAIVCNHEGDKNGDVIALERGKKIDIDN 267
                  +         AP     L    +  +A  C+ +      V  L+    +  + 
Sbjct: 190 GKRGRPRLDAKSHTRAPAP-EPKQLPCRTSCRRATNCSSK-----TVAGLDASGSVVRNQ 249

Query: 268 VGKNATQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTTDNNGLAASLSKSGT 327
           + +N  Q        +   S +  T    + +  +L     E    + +  + +L K   
Sbjct: 250 LAQNIVQ--------EGSSSVISRTPCQELPLSIRLTDQQNEHHLVNGSSNSENLVK--- 309

Query: 328 VEATADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIGVENSG 387
           V  +   +  GAK+RKSG+V+RF Q+      P     E    VV      E +G    G
Sbjct: 310 VPPSQGGQVTGAKKRKSGNVRRFEQNK-----PTQGQGECGALVV-----AEDVG-STEG 369

Query: 388 YRGESFIRNNNTDDARNELRIIKIIKPLGYSASVSNNIQ 397
             G+       T+   N + I KIIKP+ ++A+V+N++Q
Sbjct: 370 ETGD----KKKTEGCPNRVHITKIIKPVRFAAAVNNDVQ 370

[Close]

BLAST of Carg11056 vs. ExPASy Swiss-Prot
Match: P05205 (Heterochromatin protein 1 OS=Drosophila melanogaster OX=7227 GN=Su(var)205 PE=1 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 4.1e-08
Identity = 33/95 (34.74%), Postives = 49/95 (51.58%), Query Frame = 0


Query: 78  DGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIKWRGWPETANTWEPLENLHTCS 137
           D  E+         ++  Y +E I  +RVRKG+++Y +KW+G+PET NTWEP  NL  C 
Sbjct: 6   DNPESSAKVSDAEEEEEEYAVEKIIDRRVRKGKVEYYLKWKGYPETENTWEPENNL-DCQ 65

Query: 138 DFIDAFERSLMTGKQRKRKRKHGVVHNQTKKRQQG 173
           D I  +E S    ++    +K     +   K  QG
Sbjct: 66  DLIQQYEASRKDEEKSAASKKDRPSSSAKAKETQG 99

[Close]

BLAST of Carg11056 vs. ExPASy Swiss-Prot
Match: P29227 (Heterochromatin protein 1 OS=Drosophila virilis OX=7244 GN=HP1A PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.4e-08
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 78  DGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIKWRGWPETANTWEPLENLHTCS 137
           D  E + A+     ++  Y +E I  +RVRKG+++Y +KW+G+ ET NTWEP  NL  C 
Sbjct: 6   DNPETNNASSGAEEEEEEYAVEKILDRRVRKGKVEYYLKWKGYAETENTWEPEGNL-DCQ 65

Query: 138 DFIDAFERS 147
           D I  +E S
Sbjct: 66  DLIQQYELS 73

[Close]

BLAST of Carg11056 vs. ExPASy TrEMBL
Match: A0A6J1HIZ9 (chromo domain-containing protein LHP1-like OS=Cucurbita moschata OX=3662 GN=LOC111464484 PE=4 SV=1)

HSP 1 Score: 751.9 bits (1940), Expect = 1.4e-213
Identity = 392/401 (97.76%), Postives = 393/401 (98.00%), Query Frame = 0


Query: 1   MKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNS----NNNNAIISVEPSTSHLSKT 60
           MKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNS    NNNNAIISVEPSTSHLSKT
Sbjct: 1   MKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNSNNNNNNNNAIISVEPSTSHLSKT 60

Query: 61  HQEQNLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIK 120
           HQEQNLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIK
Sbjct: 61  HQEQNLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIK 120

Query: 121 WRGWPETANTWEPLENLHTCSDFIDAFERSLMTGKQRKRKRKHGVVHNQTKKRQQGANFS 180
           WRGWPETANTWEPLENLHTCSDFIDAFERSLMTGKQRKRKRKHGVVH QTKKRQQGANFS
Sbjct: 121 WRGWPETANTWEPLENLHTCSDFIDAFERSLMTGKQRKRKRKHGVVHTQTKKRQQGANFS 180

Query: 181 TYNVTDVEISVLDQRLPSAPINMSSLTHHYAHSQAIVCNHEGDKNGDVIALERGKKIDID 240
           TYNVTDVEISVLDQRLPSAPINMSSLTHHYAHSQAIVCNHEGDKNGDVIALERGKKIDID
Sbjct: 181 TYNVTDVEISVLDQRLPSAPINMSSLTHHYAHSQAIVCNHEGDKNGDVIALERGKKIDID 240

Query: 241 NVGKNATQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTTDNNGLAASLSKSG 300
           NVGKNATQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTTDNNG AA LSKSG
Sbjct: 241 NVGKNATQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTTDNNGPAA-LSKSG 300

Query: 301 TVEATADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIGVENS 360
           TVEATADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIG+ENS
Sbjct: 301 TVEATADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIGIENS 360

Query: 361 GYRGESFIRNNNTDDARNELRIIKIIKPLGYSASVSNNIQD 398
           GYRGESFIRNN TDDARNELRIIKIIKPLGYSASVSNNIQD
Sbjct: 361 GYRGESFIRNNKTDDARNELRIIKIIKPLGYSASVSNNIQD 400

[Close]

BLAST of Carg11056 vs. ExPASy TrEMBL
Match: A0A6J1KL10 (chromo domain-containing protein LHP1-like OS=Cucurbita maxima OX=3661 GN=LOC111494240 PE=4 SV=1)

HSP 1 Score: 739.2 bits (1907), Expect = 9.6e-210
Identity = 383/401 (95.51%), Postives = 388/401 (96.76%), Query Frame = 0


Query: 1   MKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNS----NNNNAIISVEPSTSHLSKT 60
           MKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNS    NNN+AIISVEPSTSHLSKT
Sbjct: 1   MKIKGSGRKKSASGSTVAMDGGEVVHGGDSDYANMNSSSNNNNNDAIISVEPSTSHLSKT 60

Query: 61  HQEQNLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIK 120
           HQEQNLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIK
Sbjct: 61  HQEQNLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIK 120

Query: 121 WRGWPETANTWEPLENLHTCSDFIDAFERSLMTGKQRKRKRKHGVVHNQTKKRQQGANFS 180
           WRGWPETANTWEPLENLHTCSDFIDAFERSL TGKQRKRKRKHGVVH QTKKRQQGANFS
Sbjct: 121 WRGWPETANTWEPLENLHTCSDFIDAFERSLTTGKQRKRKRKHGVVHTQTKKRQQGANFS 180

Query: 181 TYNVTDVEISVLDQRLPSAPINMSSLTHHYAHSQAIVCNHEGDKNGDVIALERGKKIDID 240
           TYNVTDVEISVLDQRLPSAPINMSSLTHHY HSQ+IVCNHEGDKNGD+IALERGKKI+ID
Sbjct: 181 TYNVTDVEISVLDQRLPSAPINMSSLTHHYTHSQSIVCNHEGDKNGDLIALERGKKINID 240

Query: 241 NVGKNATQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTTDNNGLAASLSKSG 300
           NVGKN TQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEART DNNG AASLSKSG
Sbjct: 241 NVGKNTTQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTMDNNGPAASLSKSG 300

Query: 301 TVEATADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIGVENS 360
           TVEATADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIGVENS
Sbjct: 301 TVEATADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVEPIGVENS 360

Query: 361 GYRGESFIRNNNTDDARNELRIIKIIKPLGYSASVSNNIQD 398
           GY GE FIRNN TD+ARNELRIIKIIKPLGYSASVSNNIQD
Sbjct: 361 GYHGEGFIRNNKTDEARNELRIIKIIKPLGYSASVSNNIQD 401

[Close]

BLAST of Carg11056 vs. ExPASy TrEMBL
Match: A0A6J1KVS2 (chromo domain-containing protein LHP1-like OS=Cucurbita maxima OX=3661 GN=LOC111499147 PE=4 SV=1)

HSP 1 Score: 588.6 bits (1516), Expect = 2.1e-164
Identity = 318/408 (77.94%), Postives = 348/408 (85.29%), Query Frame = 0


Query: 1   MKIKGSGRKKSASGSTV--------AMDGGEVVHGGDSDYANMNSNNNNAIISVEPSTSH 60
           MKIKG  RKKSASGST         AMDGGE VHGGDSDY +MN+ NNN I   EPSTSH
Sbjct: 1   MKIKGGRRKKSASGSTEVVMGPIQDAMDGGE-VHGGDSDYVDMNT-NNNPINGGEPSTSH 60

Query: 61  LSKTHQEQNLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQ 120
           LS+THQEQNL E D   + +E+DE DG EA FAAQRTNLDDGFYEIEAIRRKRVRKGQLQ
Sbjct: 61  LSETHQEQNLDEPD---EQDEQDEQDGTEAAFAAQRTNLDDGFYEIEAIRRKRVRKGQLQ 120

Query: 121 YLIKWRGWPETANTWEPLENLHTCSDFIDAFERSLMTGKQRKRKRKHGVVHNQTKKRQQG 180
           YLIKWRGWPETANTWEPLENLHTCS+FI+AFE+SL++GKQRKRKRKHGVVH QTKKRQQ 
Sbjct: 121 YLIKWRGWPETANTWEPLENLHTCSEFIEAFEQSLISGKQRKRKRKHGVVHVQTKKRQQR 180

Query: 181 ANFSTYNVTDVEISVLDQRLPSAPINMSSLTHHYAHSQAIVCNHEGDKNGDVIALERGKK 240
           ANFSTYNVTDVEISV+DQRLPSAPINM SLT+ YA S+++V NHEG+KNGDV A+ERG+ 
Sbjct: 181 ANFSTYNVTDVEISVVDQRLPSAPINMPSLTNPYARSRSVVYNHEGEKNGDVTAIERGRL 240

Query: 241 IDIDNVGKNATQR---KKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTTDNNGLA 300
            DIDNVG+NATQR   KK EHEYDPKLSELKAT LTN+AIGDKLA++F +ARTT+NN LA
Sbjct: 241 ADIDNVGRNATQRFEQKKAEHEYDPKLSELKATGLTNIAIGDKLAIDFHDARTTENNVLA 300

Query: 301 ASLSKSGTVEATADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVE 360
           A LSK+G+VE   +NRC GAKRRKSGSVKRFRQDSTLSELPV QN ELTLAVVES   VE
Sbjct: 301 AGLSKTGSVELVTENRCTGAKRRKSGSVKRFRQDSTLSELPVVQNPELTLAVVESSVGVE 360

Query: 361 PIGVENSGYRGESFIRNNNTDDARNELRIIKIIKPLGYSASVSNNIQD 398
           PIGVENSGY GE   RNN TD+ARNE  IIKI+KPLGYSASVSNNIQD
Sbjct: 361 PIGVENSGYHGERLSRNNRTDEARNEPSIIKIVKPLGYSASVSNNIQD 403

[Close]

BLAST of Carg11056 vs. ExPASy TrEMBL
Match: A0A5D3DLL0 (Chromo domain-containing protein LHP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00590 PE=4 SV=1)

HSP 1 Score: 580.5 bits (1495), Expect = 5.7e-162
Identity = 315/412 (76.46%), Postives = 347/412 (84.22%), Query Frame = 0


Query: 1   MKIKGS-GRKKSASGSTV--------AMDGGEVVHGGDSDYANMNSNNNNAIISVEPSTS 60
           MK KG  GRKKSAS S          AMD GE VHGG+SDYAN+N  NNN I   EPS S
Sbjct: 1   MKFKGGVGRKKSASPSMEVVVGSIQDAMDSGE-VHGGNSDYANVNI-NNNPINGSEPSNS 60

Query: 61  HLSKTHQEQNLGEL-DDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQ 120
           HL++THQ+QNL E  DD G+G+EEDE DGDEA FA+QRTNLDDGFYEIEAIRRKRVRKGQ
Sbjct: 61  HLTETHQDQNLEEPDDDDGEGDEEDEQDGDEAAFASQRTNLDDGFYEIEAIRRKRVRKGQ 120

Query: 121 LQYLIKWRGWPETANTWEPLENLHTCSDFIDAFERSLMTGKQRKRKRKHGVVHNQTKKR- 180
           LQYLIKWRGWPE ANTWEPLENLHTCSDFI+AFE+SLMTGKQRKRKRKHGVVH QTKKR 
Sbjct: 121 LQYLIKWRGWPEAANTWEPLENLHTCSDFIEAFEQSLMTGKQRKRKRKHGVVHTQTKKRQ 180

Query: 181 -QQGANFSTYNVTDVEISVLDQRLPSAPINMSSLTHHYAHSQAIVCNHEGDKNGDVIALE 240
            QQ  +FS YNVTDVEISV+DQRLPSAP+NMSSLT+ YAHSQ++V NHEG+KNGDV A+E
Sbjct: 181 HQQRGSFSAYNVTDVEISVVDQRLPSAPLNMSSLTNPYAHSQSLVYNHEGEKNGDVTAIE 240

Query: 241 RGKKIDIDNVGKNATQR---KKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTTDN 300
           RGK+ DIDN+G+NATQR   KKDEHEYDPKLSELKATVLTN+A+ DK  +N Q+ARTT+N
Sbjct: 241 RGKQTDIDNMGRNATQRSEWKKDEHEYDPKLSELKATVLTNIAVTDKHVINVQDARTTEN 300

Query: 301 NGLAASLSKSGTVEATADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESG 360
           NG AA LSK   VE   DNRC GA+RRKSGSV+RFR DSTLSELP +Q+AELTLAVVESG
Sbjct: 301 NGSAAGLSKGAFVEPVTDNRCTGARRRKSGSVRRFRHDSTLSELPRSQSAELTLAVVESG 360

Query: 361 AQVEPIGVENSGYRGESFIRNNNTDDARNELRIIKIIKPLGYSASVSNNIQD 398
            +VEPIGVENSGY GES  RNN TDDARNE  IIKIIKPLGYSASVSNN+QD
Sbjct: 361 VRVEPIGVENSGYHGESLSRNNKTDDARNETSIIKIIKPLGYSASVSNNMQD 410

[Close]

BLAST of Carg11056 vs. ExPASy TrEMBL
Match: A0A6J1H4P7 (chromo domain-containing protein LHP1-like OS=Cucurbita moschata OX=3662 GN=LOC111460458 PE=4 SV=1)

HSP 1 Score: 578.6 bits (1490), Expect = 2.2e-161
Identity = 314/408 (76.96%), Postives = 344/408 (84.31%), Query Frame = 0


Query: 1   MKIKGSGRKKSASGSTV--------AMDGGEVVHGGDSDYANMNSNNNNAIISVEPSTSH 60
           MKIKG  RKKSASGST         AMDGGE VHGGDSDY +MN+ NNN I   EPSTSH
Sbjct: 1   MKIKGGRRKKSASGSTEVVMGSIQDAMDGGE-VHGGDSDYVDMNT-NNNPINGGEPSTSH 60

Query: 61  LSKTHQEQNLGELDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQ 120
           LS+THQEQNL E D   + +E+DE DG EA F AQRTNLDDGFYEIEAIRRKRVRKGQLQ
Sbjct: 61  LSETHQEQNLDEPD---EQDEQDEQDGTEAAFDAQRTNLDDGFYEIEAIRRKRVRKGQLQ 120

Query: 121 YLIKWRGWPETANTWEPLENLHTCSDFIDAFERSLMTGKQRKRKRKHGVVHNQTKKRQQG 180
           YLIKWRGWPETANTWEPLENLHTCS+FI+AFE SL++GKQRKRKRKHGVVH QTKKRQQ 
Sbjct: 121 YLIKWRGWPETANTWEPLENLHTCSEFIEAFEESLISGKQRKRKRKHGVVHVQTKKRQQR 180

Query: 181 ANFSTYNVTDVEISVLDQRLPSAPINMSSLTHHYAHSQAIVCNHEGDKNGDVIALERGKK 240
           ANFSTYNVTDVEISV+DQRLPSAPIN+ SLT+ YA S+++V NHEG+KNGDV A+ERG+ 
Sbjct: 181 ANFSTYNVTDVEISVVDQRLPSAPINIPSLTNPYARSRSVVYNHEGEKNGDVTAIERGRL 240

Query: 241 IDIDNVGKNATQR---KKDEHEYDPKLSELKATVLTNVAIGDKLAVNFQEARTTDNNGLA 300
            DIDN G+NATQR   KK EHEYDPKLSELKATVLTN+AIGDKLA++F +ARTT+NN  A
Sbjct: 241 ADIDNAGRNATQRFEQKKAEHEYDPKLSELKATVLTNIAIGDKLAIDFHDARTTENNIPA 300

Query: 301 ASLSKSGTVEATADNRCIGAKRRKSGSVKRFRQDSTLSELPVAQNAELTLAVVESGAQVE 360
           A LSK+G+VE   +NRC GAKRRKSGSVKRFRQDSTLSELPV QN ELTLAVVESG   E
Sbjct: 301 AGLSKTGSVELVTENRCTGAKRRKSGSVKRFRQDSTLSELPVVQNPELTLAVVESGVGAE 360

Query: 361 PIGVENSGYRGESFIRNNNTDDARNELRIIKIIKPLGYSASVSNNIQD 398
           PIGVENSGY GES   NN TD+ARNE  IIKI+KPLG SASVSNNIQD
Sbjct: 361 PIGVENSGYHGESLSWNNRTDEARNEPSIIKIVKPLGCSASVSNNIQD 403

[Close]

BLAST of Carg11056 vs. TAIR 10
Match: AT5G17690.1 (like heterochromatin protein (LHP1) )

HSP 1 Score: 193.0 bits (489), Expect = 4.9e-49
Identity = 152/404 (37.62%), Postives = 211/404 (52.23%), Query Frame = 0


Query: 5   GSGRKKSASGSTVAMDGGEVVHGGDSDYANMNSNNNNAIISVEPSTSHLSKTHQEQNLGE 64
           G  RK S  G   + DGG    GG  +         + +  +           +E+   +
Sbjct: 29  GESRKISGDGGFGSDDGGGGGGGGSGE---------SILREIGDDRPTEDGDEEEEEDED 88

Query: 65  LDDGGDGEEEDEHDGDEADFAAQRTNLDDGFYEIEAIRRKRVRKGQLQYLIKWRGWPETA 124
            DDGGD EE++E +G+      +R  LD+GFYEIEAIRRKRVRKG++QYLIKWRGWPETA
Sbjct: 89  EDDGGD-EEDEEGEGEGGQ--EERPKLDEGFYEIEAIRRKRVRKGKVQYLIKWRGWPETA 148

Query: 125 NTWEPLENLHTCSDFIDAFERSLMTGKQ-RKRKRKHGVVHNQTKKRQQ--GANFSTYNVT 184
           NTWEPLENL + +D IDAFE SL  GK  RKRKRK+   H+Q KK+Q+    +      +
Sbjct: 149 NTWEPLENLQSIADVIDAFEGSLKPGKPGRKRKRKYAGPHSQMKKKQRLTSTSHDATEKS 208

Query: 185 DVEISVLDQRLPSAP----INMSSLTHHYAHSQAIVCNHEGDKNGDVIALERGKKIDIDN 244
           D   S+ +  LP  P    ++ SSL +    ++    +++ + N   + + R  ++ IDN
Sbjct: 209 DSSTSLNNSSLPDIPDPLDLSGSSLLNRDVEAKNAYVSNQVEANSGSVGMARQVRL-IDN 268

Query: 245 VGKNATQRKKDEHEYDPKLSELKATVLTNVAIGDKLAVNF-QEARTTDNNGLAASLSKSG 304
                      E EYDP L+EL+  V  +   G         E      NGL     K  
Sbjct: 269 -----------EKEYDPTLNELRGPVNNSNGAGCSQGGGIGSEGDNVRPNGLLKVYPK-- 328

Query: 305 TVEATADNRCIGAKRRKSGSVKRFRQDSTLSE---LPVAQNAELTLAVVESGAQVEPIGV 364
             E   ++R IGAKRRKSGSVKRF+QD + S     P  QN    L  ++S  ++  +G 
Sbjct: 329 --ELDKNSRFIGAKRRKSGSVKRFKQDGSTSNNHTAPTDQNLTPDLTTLDSFGRIARMGN 388

Query: 365 ENSGYRGESFIRNNNTDDARNELRIIKIIKPLGYSASVSNNIQD 398
           E   Y G     N +      EL I KI+KP+ ++ASVS+N+Q+
Sbjct: 389 E---YPGVMENCNLSQKTKIEELDITKILKPMSFTASVSDNVQE 401

The following BLAST results are available for this feature:

BLAST of Carg11056 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026079.1	2.2e-232	100.00	Chromo domain-containing protein LHP1, partial [Cucurbita argyrosperma subsp. ar...	[more]
XP_023514742.1	2.0e-214	97.98	chromo domain-containing protein LHP1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022964471.1	2.9e-213	97.76	chromo domain-containing protein LHP1-like [Cucurbita moschata]	[more]
XP_022999903.1	2.0e-209	95.51	chromo domain-containing protein LHP1-like [Cucurbita maxima]	[more]
KAG6593747.1	2.0e-201	93.95	Chromo domain-containing protein LHP1, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of Carg11056 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q946J8	6.9e-48	37.62	Chromo domain-containing protein LHP1 OS=Arabidopsis thaliana OX=3702 GN=LHP1 PE...	[more]
Q944N1	1.4e-37	33.80	Chromo domain protein LHP1 OS=Solanum lycopersicum OX=4081 GN=LHP1 PE=1 SV=2	[more]
Q339W7	2.2e-25	29.07	Probable chromo domain-containing protein LHP1 OS=Oryza sativa subsp. japonica O...	[more]
P05205	4.1e-08	34.74	Heterochromatin protein 1 OS=Drosophila melanogaster OX=7227 GN=Su(var)205 PE=1 ...	[more]
P29227	5.4e-08	42.03	Heterochromatin protein 1 OS=Drosophila virilis OX=7244 GN=HP1A PE=3 SV=1	[more]

BLAST of Carg11056 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HIZ9	1.4e-213	97.76	chromo domain-containing protein LHP1-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1KL10	9.6e-210	95.51	chromo domain-containing protein LHP1-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1KVS2	2.1e-164	77.94	chromo domain-containing protein LHP1-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A5D3DLL0	5.7e-162	76.46	Chromo domain-containing protein LHP1-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1H4P7	2.2e-161	76.96	chromo domain-containing protein LHP1-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of Carg11056 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17690.1	4.9e-49	37.62	like heterochromatin protein (LHP1)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017984	Chromo domain subgroup	PRINTS	PR00504	CHROMODOMAIN	coord: 121..133 score: 51.03 coord: 93..101 score: 28.52 coord: 106..120 score: 41.33
IPR000953	Chromo/chromo shadow domain	SMART	SM00298	chromo_7	coord: 95..148 e-value: 7.0E-16 score: 68.8
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 96..155 score: 18.023701
IPR023780	Chromo domain	PFAM	PF00385	Chromo	coord: 96..145 e-value: 1.6E-15 score: 56.8
None	No IPR available	GENE3D	2.40.50.40		coord: 70..146 e-value: 5.4E-22 score: 79.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..165
None	No IPR available	PANTHER	PTHR47240:SF2	CHROMO DOMAIN-CONTAINING PROTEIN LHP1	coord: 5..397
None	No IPR available	CDD	cd00024	CD_CSD	coord: 96..145 e-value: 7.39496E-22 score: 85.9916
IPR044251	Chromo domain-containing protein LHP1	PANTHER	PTHR47240	CHROMO DOMAIN-CONTAINING PROTEIN LHP1	coord: 5..397
IPR023779	Chromo domain, conserved site	PROSITE	PS00598	CHROMO_1	coord: 113..133
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 89..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11056-RA	Carg11056-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
biological_process	GO:0006325	chromatin organization
cellular_component	GO:0000792	heterochromatin
cellular_component	GO:0005634	nucleus