Carg11055 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg11055
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	50S ribosomal protein L3
Location	Carg_Chr08: 5816201 .. 5818334 (-)
RNA-Seq Expression	Carg11055
Synteny	Carg11055

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAATAAACGGATAAGAAAACGAGCAATCCTCGCCATCCCCAGTTCGTTCTTCGTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCACCACATGAATCTCTGAAACCAGAGAAGAAGAAATGTCGGCCATACCATTTTCTTCAGCTTCAACCTCAATCCGACATCCAATTTTCACTAACAATGCTTCTTCTTCATCTTCGTCTCTGAGGCTAAGAACTTCCTTCCTCGCCCTTCCTCTCAAATCCCACCACAACAGCAACCTGAGTCTCCAATTTCCGGCACAAAGAACCACTAGACGCACTAACAATGGCGTACCGGTTTGTATGAGTATGGAGGCCGGCATTGGAGTAATGGCCACCAAGCTCGGTATGATGAGCTTCTTCGAGCCGGACGGCAAGGTCGTCCCTGTCACGGTGGTTGGTTTCAAGGAAGGCAATATCGTCACGCAGGTTAAGACGGAGGCGACCGACGGCTACAGTGCCGTTCAGGTTGGGTACCGTAGGGTTAGAGATCGGAAATTGACGAAACCGGAATTAGGGCATCTCGAGAAAGCTGGAGCGATTCCTATGCGCCATTTGCAGGAGTTTCGTCTTGTGAATGTTGATGGATTTGAGCCCAATCAACGGTTGGTTTTCAATGAACTTTTCAAGGAGGGCGATCTGGTTGATGTCTCCGGCATCACAATTGGAAAGGGATTTCAAGGTTTTGTGCTTCTTGCTCATTCTGTTTTAAAGTCTATGTTTCATTGAATTTCCTTGGATTTTCATTTTCCTCTAAGCTTCTGGCTTTTGTTCTGTGCCTGGATAATGTTGGAGTTGAATTTAGGCATGCTCAGGAAGAATTAACCATGAATTTTCATTGATCTTTCACTGTTGAATGCCCAATTACATATACAATTCCAAAGTCTGAAGCAGTTTAAAATTGGATTTTCATTTCCCTCTAAGACTTCTGGCTTTTGTTCTGCACCTGGATAATGTTGGAGTTGAATATAGGCATGCTCTGGAAGATTTAAACATGAATTTTCATTGATATTTTACTGCTAAATGCCCAATTACATATACCATTCATAAGCTTATTTCTAAATCCCAAACTAAACTATGAGATTCCACGTAGGTTGGAGAGAAGAACGAAGCATTGTTTGCAAGAGTGTGGAAATCTCTCCGTAAAAATTTTGAGAAAAAGTCCGAAAGGAAAAATCTATATAAAAGACAATATCTCCTAGCGGTGTGTTTTAGTTGTTACAGTATCGTTATCAAGAAATGTCATCTTAATCTCAAACGTTTTATATTCCATTATGAATCTAAATCCTGTTAGATTTTGCAATTTTTTTATGTGGGTGAGGATGCGTGGGCTGTCTAGCAAGTTTTTATATGCTTAAGTTGGAGGTCTTTTGTCACAGTAGACTCCATGATATTGTGCTTGCATCGAATTATACATGTTCAACTACTTAATATACTCTCCCTTCATAGATCAGCTCAAGTATTGGTACTCGACTTATTACAAGGGTTTGAACTCAAAATGTGTAATACCCCGTTAAATGACCATTAGAAATGAGAGCAAACTTATGCTAGATTTTGATCCTTTAACATGTTCTCAACACCCCTTGTGTAAACTTCAATATTAATTTGATTTACAAGATGCGACTCAACATGTGGATAACGAATGTAAAGAAGAAAGTAAATTTAAATCATTTTATGTGTTCTTCGTTCCTTTCAACACTACTCTCTTAACTATTTTTGATCTAATTCTTCTCTAGGTGGAATCAAGAGGCACAACTTCAAAAGGGGTCCAATGACTCACGGTTCGAAGAGCCACAGGGCACTTGGATCTATCGGTGCAGGAACTACACCGGGTCGCGTGTATAAGGGGAAAAAGATGCCTGGAAGGATGGGAGGAACCAAGAGAAAGATCAGAAAACTGAAGATTGTAAAGGTAGATGATGAGCTTAATGTTGTGATGATCAAAGGAGCTGTCCCTGGTAAGCCAGGAAACCTTCTTCGAATAGCTCCTGCAAAGATAGTAGGAAAGAACATTCCTAAGAATTAGCTTTAATCTTTTGAGCTGTTGCATCTCTTCAACTGGTTATTTGTATTATGATTACTTCACACTTGAGTTCTCCTGAAATTTTTTAAT

mRNA sequence

GAAATAAACGGATAAGAAAACGAGCAATCCTCGCCATCCCCAGTTCGTTCTTCGTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCACCACATGAATCTCTGAAACCAGAGAAGAAGAAATGTCGGCCATACCATTTTCTTCAGCTTCAACCTCAATCCGACATCCAATTTTCACTAACAATGCTTCTTCTTCATCTTCGTCTCTGAGGCTAAGAACTTCCTTCCTCGCCCTTCCTCTCAAATCCCACCACAACAGCAACCTGAGTCTCCAATTTCCGGCACAAAGAACCACTAGACGCACTAACAATGGCGTACCGGTTTGTATGAGTATGGAGGCCGGCATTGGAGTAATGGCCACCAAGCTCGGTATGATGAGCTTCTTCGAGCCGGACGGCAAGGTCGTCCCTGTCACGGTGGTTGGTTTCAAGGAAGGCAATATCGTCACGCAGGTTAAGACGGAGGCGACCGACGGCTACAGTGCCGTTCAGGTTGGGTACCGTAGGGTTAGAGATCGGAAATTGACGAAACCGGAATTAGGGCATCTCGAGAAAGCTGGAGCGATTCCTATGCGCCATTTGCAGGAGTTTCGTCTTGTGAATGTTGATGGATTTGAGCCCAATCAACGGTTGGTTTTCAATGAACTTTTCAAGGAGGGCGATCTGGTTGATGTCTCCGGCATCACAATTGGAAAGGGATTTCAAGGTGGAATCAAGAGGCACAACTTCAAAAGGGGTCCAATGACTCACGGTTCGAAGAGCCACAGGGCACTTGGATCTATCGGTGCAGGAACTACACCGGGTCGCGTGTATAAGGGGAAAAAGATGCCTGGAAGGATGGGAGGAACCAAGAGAAAGATCAGAAAACTGAAGATTGTAAAGGTAGATGATGAGCTTAATGTTGTGATGATCAAAGGAGCTGTCCCTGGTAAGCCAGGAAACCTTCTTCGAATAGCTCCTGCAAAGATAGTAGGAAAGAACATTCCTAAGAATTAGCTTTAATCTTTTGAGCTGTTGCATCTCTTCAACTGGTTATTTGTATTATGATTACTTCACACTTGAGTTCTCCTGAAATTTTTTAAT

Coding sequence (CDS)

ATGTCGGCCATACCATTTTCTTCAGCTTCAACCTCAATCCGACATCCAATTTTCACTAACAATGCTTCTTCTTCATCTTCGTCTCTGAGGCTAAGAACTTCCTTCCTCGCCCTTCCTCTCAAATCCCACCACAACAGCAACCTGAGTCTCCAATTTCCGGCACAAAGAACCACTAGACGCACTAACAATGGCGTACCGGTTTGTATGAGTATGGAGGCCGGCATTGGAGTAATGGCCACCAAGCTCGGTATGATGAGCTTCTTCGAGCCGGACGGCAAGGTCGTCCCTGTCACGGTGGTTGGTTTCAAGGAAGGCAATATCGTCACGCAGGTTAAGACGGAGGCGACCGACGGCTACAGTGCCGTTCAGGTTGGGTACCGTAGGGTTAGAGATCGGAAATTGACGAAACCGGAATTAGGGCATCTCGAGAAAGCTGGAGCGATTCCTATGCGCCATTTGCAGGAGTTTCGTCTTGTGAATGTTGATGGATTTGAGCCCAATCAACGGTTGGTTTTCAATGAACTTTTCAAGGAGGGCGATCTGGTTGATGTCTCCGGCATCACAATTGGAAAGGGATTTCAAGGTGGAATCAAGAGGCACAACTTCAAAAGGGGTCCAATGACTCACGGTTCGAAGAGCCACAGGGCACTTGGATCTATCGGTGCAGGAACTACACCGGGTCGCGTGTATAAGGGGAAAAAGATGCCTGGAAGGATGGGAGGAACCAAGAGAAAGATCAGAAAACTGAAGATTGTAAAGGTAGATGATGAGCTTAATGTTGTGATGATCAAAGGAGCTGTCCCTGGTAAGCCAGGAAACCTTCTTCGAATAGCTCCTGCAAAGATAGTAGGAAAGAACATTCCTAAGAATTAG

Protein sequence

MSAIPFSSASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNLSLQFPAQRTTRRTNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN

Homology

[Close]

BLAST of Carg11055 vs. NCBI nr
Match: XP_023515139.1 (50S ribosomal protein L3, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG7026080.1 50S ribosomal protein L3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 565.8 bits (1457), Expect = 2.1e-157
Identity = 290/290 (100.00%), Postives = 290/290 (100.00%), Query Frame = 0


Query: 1   MSAIPFSSASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNLSLQFPAQRTTRR 60
           MSAIPFSSASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNLSLQFPAQRTTRR
Sbjct: 1   MSAIPFSSASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNLSLQFPAQRTTRR 60

Query: 61  TNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYS 120
           TNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYS
Sbjct: 61  TNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYS 120

Query: 121 AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGD 180
           AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGD
Sbjct: 121 AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGD 180

Query: 181 LVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 240
           LVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG
Sbjct: 181 LVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 240

Query: 241 GTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           GTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 GTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 290

[Close]

BLAST of Carg11055 vs. NCBI nr
Match: XP_022999904.1 (50S ribosomal protein L3, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 563.9 bits (1452), Expect = 7.9e-157
Identity = 289/290 (99.66%), Postives = 289/290 (99.66%), Query Frame = 0


Query: 1   MSAIPFSSASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNLSLQFPAQRTTRR 60
           MSAIPFSSASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNL LQFPAQRTTRR
Sbjct: 1   MSAIPFSSASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNLRLQFPAQRTTRR 60

Query: 61  TNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYS 120
           TNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYS
Sbjct: 61  TNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYS 120

Query: 121 AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGD 180
           AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGD
Sbjct: 121 AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGD 180

Query: 181 LVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 240
           LVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG
Sbjct: 181 LVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 240

Query: 241 GTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           GTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 GTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 290

[Close]

BLAST of Carg11055 vs. NCBI nr
Match: XP_022964564.1 (50S ribosomal protein L3, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 562.0 bits (1447), Expect = 3.0e-156
Identity = 288/290 (99.31%), Postives = 288/290 (99.31%), Query Frame = 0


Query: 1   MSAIPFSSASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNLSLQFPAQRTTRR 60
           MSAIPFSSASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNL LQFPAQRTTR 
Sbjct: 1   MSAIPFSSASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNLRLQFPAQRTTRH 60

Query: 61  TNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYS 120
           TNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYS
Sbjct: 61  TNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYS 120

Query: 121 AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGD 180
           AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGD
Sbjct: 121 AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGD 180

Query: 181 LVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 240
           LVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG
Sbjct: 181 LVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 240

Query: 241 GTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           GTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 GTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 290

[Close]

BLAST of Carg11055 vs. NCBI nr
Match: KAG6574805.1 (50S ribosomal protein L3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013387.1 50S ribosomal protein L3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 519.2 bits (1336), Expect = 2.2e-143
Identity = 266/292 (91.10%), Postives = 277/292 (94.86%), Query Frame = 0


Query: 1   MSAIPFSSASTSIRHPIFTNNASSS--SSSLRLRTSFLALPLKSHHNSNLSLQFPAQRTT 60
           MS I  SSASTS RHPIFTNNASSS  SSSL+LRTSFLALPLKSH N+NL  QFP  RTT
Sbjct: 1   MSVISISSASTSNRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNLRFQFPRPRTT 60

Query: 61  RRTNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDG 120
           RR N+G+ VCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KTEATDG
Sbjct: 61  RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG 120

Query: 121 YSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKE 180
           YSAVQVGYRRVRDRKLTKPE+GHL+KAGAIPMRHLQEFRL ++DGFEPNQRLVFNELFKE
Sbjct: 121 YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKE 180

Query: 181 GDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240
           GDLVDVSG TIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR
Sbjct: 181 GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240

Query: 241 MGGTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           MGGTKRKIRKLKIVK+DD+LNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292

[Close]

BLAST of Carg11055 vs. NCBI nr
Match: XP_023006396.1 (50S ribosomal protein L3, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 518.1 bits (1333), Expect = 5.0e-143
Identity = 265/292 (90.75%), Postives = 277/292 (94.86%), Query Frame = 0


Query: 1   MSAIPFSSASTSIRHPIFTNNASSS--SSSLRLRTSFLALPLKSHHNSNLSLQFPAQRTT 60
           MS I  SSASTS RHPIFTNNASSS  SSSL+LRTSFLALPLKSH N+N+  QFP  RTT
Sbjct: 1   MSVISISSASTSKRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRTT 60

Query: 61  RRTNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDG 120
           RR N+G+ VCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KTEATDG
Sbjct: 61  RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG 120

Query: 121 YSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKE 180
           YSAVQVGYRRVRDRKLTKPE+GHL+KAGAIPMRHLQEFRL ++DGFEPNQRLVFNELFKE
Sbjct: 121 YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKE 180

Query: 181 GDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240
           GDLVDVSG TIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR
Sbjct: 181 GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240

Query: 241 MGGTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           MGGTKRKIRKLKIVK+DD+LNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292

[Close]

BLAST of Carg11055 vs. ExPASy Swiss-Prot
Match: Q9SKX4 (50S ribosomal protein L3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3A PE=2 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 4.1e-108
Identity = 193/224 (86.16%), Postives = 208/224 (92.86%), Query Frame = 0


Query: 67  VCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYSAVQVGY 126
           V  SMEAGIGVM +KLGMMSFFE DG VVPVTVVGF+EGNIVTQ+KT ATDGY AVQ+GY
Sbjct: 48  VSSSMEAGIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDGYDAVQIGY 107

Query: 127 RRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGDLVDVSG 186
           RRVRD+KLTKPE GHL+KAG IPMRHLQEFRL N++GFEPNQ+LVF+E+FKEGDLVDV+G
Sbjct: 108 RRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGDLVDVAG 167

Query: 187 ITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKI 246
            TIGKGFQGGIKRH+FKRG MTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGT+ KI
Sbjct: 168 TTIGKGFQGGIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTRTKI 227

Query: 247 RKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           RKLKIVKVD ELNVVMIKGA+PGKPGNLLRI PAKIVG NIPKN
Sbjct: 228 RKLKIVKVDKELNVVMIKGALPGKPGNLLRITPAKIVGVNIPKN 271

[Close]

BLAST of Carg11055 vs. ExPASy Swiss-Prot
Match: O80360 (50S ribosomal protein L3, chloroplastic (Fragment) OS=Nicotiana tabacum OX=4097 GN=RPL3 PE=2 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 5.4e-108
Identity = 203/269 (75.46%), Postives = 229/269 (85.13%), Query Frame = 0


Query: 26  SSSLRLRTSFL-ALP---LKSHHNSNLSLQFPAQRTTRRTNNGVPVCMSMEAGIGVMATK 85
           ++ L LR+ FL  LP   LK+H  ++L +   +            +  S+EAG+GVMATK
Sbjct: 3   TTPLTLRSPFLHRLPLRALKTHKPTSLHISKSS------------ISASLEAGVGVMATK 62

Query: 86  LGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYSAVQVGYRRVRDRKLTKPELGH 145
           LGMMSFFE  G VVPVTVVGF+EGNIVTQ+KTEATDGY+AVQVGYRRVRDRKLTKPE+GH
Sbjct: 63  LGMMSFFEESGTVVPVTVVGFREGNIVTQIKTEATDGYNAVQVGYRRVRDRKLTKPEMGH 122

Query: 146 LEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGDLVDVSGITIGKGFQGGIKRHN 205
           LEK+G IP+RHLQEFRL ++DGFE  Q+L F ELFKEGDLVDVSG TIGKGFQGGIKRHN
Sbjct: 123 LEKSGIIPLRHLQEFRLQSIDGFEVTQKLDFGELFKEGDLVDVSGTTIGKGFQGGIKRHN 182

Query: 206 FKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKVDDELNVV 265
           FKRG MTHGSKSHR LGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVK+DD+LN++
Sbjct: 183 FKRGQMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDQLNII 242

Query: 266 MIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           MIKGA+PGKPGNLLRIAPAKIVGKNIPK+
Sbjct: 243 MIKGALPGKPGNLLRIAPAKIVGKNIPKS 259

[Close]

BLAST of Carg11055 vs. ExPASy Swiss-Prot
Match: P82191 (50S ribosomal protein L3, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL3 PE=1 SV=2)

HSP 1 Score: 389.0 bits (998), Expect = 4.6e-107
Identity = 210/296 (70.95%), Postives = 241/296 (81.42%), Query Frame = 0


Query: 2   SAIPFSSASTSIRHPIFTNNASSSS-----SSLRLRTSFLALPLKSHHNSNLSLQFPAQR 61
           S+  +SS+  S+  P   + +SS +      SLRL TSF+  P +     ++S   P++ 
Sbjct: 13  SSCTYSSSKRSLSSPKAVSLSSSVNGTPKVQSLRLSTSFVCSPNQIIKLKSVS---PSRS 72

Query: 62  T-TRRTNNGVPV-CMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTE 121
           T  RR   G+ +  MS++AGIGVM TKLGMMSFFE DG VVPVTV+GFKEGNIVTQVKTE
Sbjct: 73  TQLRRAVGGLEIKMMSVDAGIGVMGTKLGMMSFFEEDGTVVPVTVIGFKEGNIVTQVKTE 132

Query: 122 ATDGYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNE 181
           +TDGY+AVQVGY R+RDRKLT PE GHL KAG IPMRHLQEFRLV+VD F P+Q+L+F E
Sbjct: 133 STDGYNAVQVGYERLRDRKLTMPERGHLNKAGVIPMRHLQEFRLVSVDDFTPSQKLLFEE 192

Query: 182 LFKEGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKK 241
           LFKEGD+VD+SG TIGKGFQGGIKRHNFKRG MTHGSKSHRALGSIGAGTTPG VYKGKK
Sbjct: 193 LFKEGDMVDISGTTIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSIGAGTTPGHVYKGKK 252

Query: 242 MPGRMGGTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           MPGRMGGTK KIRKLKI+K+D +L VVMIKGAVPGKPGNLLR+APAKIVGKNIPKN
Sbjct: 253 MPGRMGGTKTKIRKLKIMKIDTDLRVVMIKGAVPGKPGNLLRLAPAKIVGKNIPKN 305

[Close]

BLAST of Carg11055 vs. ExPASy Swiss-Prot
Match: B0C1D3 (50S ribosomal protein L3 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplC PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 2.1e-64
Identity = 123/213 (57.75%), Postives = 162/213 (76.06%), Query Frame = 0


Query: 75  IGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNI-VTQVKTEATDGYSAVQVGYRRVRDRK 134
           +G++ TKLGM   F+  G+ +PVTVV  + G   VTQ+KT  TDGY+A+Q+GY    ++ 
Sbjct: 3   VGILGTKLGMTQVFDEAGRAIPVTVV--QAGPCPVTQIKTAQTDGYTAIQIGYGSTTEKA 62

Query: 135 LTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGDLVDVSGITIGKGF 194
           LT+PELGHL+K+G+ P+RHLQE+RL +V  +E  Q  +  +LF EG LVD+SG +IG+GF
Sbjct: 63  LTRPELGHLKKSGSTPVRHLQEYRLADVSEYELGQS-ISADLFSEGQLVDISGTSIGRGF 122

Query: 195 QGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVK 254
            G  KRHNF+RGPM HGSK+HRA GS GAGTTPGR+Y GK+M G+MG  K+ IRKL +V+
Sbjct: 123 AGYQKRHNFRRGPMGHGSKNHRAPGSTGAGTTPGRIYPGKRMAGQMGNVKKTIRKLTVVR 182

Query: 255 VDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKN 287
           VD E NV++IKG+VPGKPG LL I PA IVG++
Sbjct: 183 VDAERNVLLIKGSVPGKPGALLNIQPATIVGES 212

[Close]

BLAST of Carg11055 vs. ExPASy Swiss-Prot
Match: B1XJT9 (50S ribosomal protein L3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rplC PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.8e-64
Identity = 126/213 (59.15%), Postives = 165/213 (77.46%), Query Frame = 0


Query: 75  IGVMATKLGMMSFFEPD-GKVVPVTVVGFKEGN-IVTQVKTEATDGYSAVQVGYRRVRDR 134
           +G++ TKLGM   F+ + G  +PVTVV  + G   VTQ+KT  TDGY++VQ+GY  V+++
Sbjct: 3   LGILGTKLGMTQIFDNETGTAIPVTVV--QAGPCTVTQIKTSETDGYTSVQIGYGDVKEK 62

Query: 135 KLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGDLVDVSGITIGKG 194
            LTKP+LGHL+KA A P+RHL+E+RL +V G+E  Q +  N +F+ G +VDVSG TIG+G
Sbjct: 63  NLTKPQLGHLKKADAAPLRHLKEYRLDDVSGYELGQAITAN-IFEAGQVVDVSGNTIGRG 122

Query: 195 FQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIV 254
           F G  KRHNFKRG MTHGSK+HR  GS GAGTTPGRVY GK+M GR GGTK  +RKL++V
Sbjct: 123 FAGYQKRHNFKRGNMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRYGGTKITVRKLEVV 182

Query: 255 KVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGK 286
           +VD+E N+++IKGA+PGK GNLL IAP+ IVG+
Sbjct: 183 RVDEEKNLLLIKGAIPGKAGNLLSIAPSNIVGQ 212

[Close]

BLAST of Carg11055 vs. ExPASy TrEMBL
Match: A0A6J1KIF2 (50S ribosomal protein L3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111494241 PE=3 SV=1)

HSP 1 Score: 563.9 bits (1452), Expect = 3.8e-157
Identity = 289/290 (99.66%), Postives = 289/290 (99.66%), Query Frame = 0


Query: 1   MSAIPFSSASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNLSLQFPAQRTTRR 60
           MSAIPFSSASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNL LQFPAQRTTRR
Sbjct: 1   MSAIPFSSASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNLRLQFPAQRTTRR 60

Query: 61  TNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYS 120
           TNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYS
Sbjct: 61  TNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYS 120

Query: 121 AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGD 180
           AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGD
Sbjct: 121 AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGD 180

Query: 181 LVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 240
           LVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG
Sbjct: 181 LVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 240

Query: 241 GTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           GTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 GTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 290

[Close]

BLAST of Carg11055 vs. ExPASy TrEMBL
Match: A0A6J1HNL2 (50S ribosomal protein L3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111464551 PE=3 SV=1)

HSP 1 Score: 562.0 bits (1447), Expect = 1.5e-156
Identity = 288/290 (99.31%), Postives = 288/290 (99.31%), Query Frame = 0


Query: 1   MSAIPFSSASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNLSLQFPAQRTTRR 60
           MSAIPFSSASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNL LQFPAQRTTR 
Sbjct: 1   MSAIPFSSASTSIRHPIFTNNASSSSSSLRLRTSFLALPLKSHHNSNLRLQFPAQRTTRH 60

Query: 61  TNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYS 120
           TNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYS
Sbjct: 61  TNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYS 120

Query: 121 AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGD 180
           AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGD
Sbjct: 121 AVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGD 180

Query: 181 LVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 240
           LVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG
Sbjct: 181 LVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMG 240

Query: 241 GTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           GTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 GTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 290

[Close]

BLAST of Carg11055 vs. ExPASy TrEMBL
Match: A0A6J1KXN5 (50S ribosomal protein L3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111499138 PE=3 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 2.4e-143
Identity = 265/292 (90.75%), Postives = 277/292 (94.86%), Query Frame = 0


Query: 1   MSAIPFSSASTSIRHPIFTNNASSS--SSSLRLRTSFLALPLKSHHNSNLSLQFPAQRTT 60
           MS I  SSASTS RHPIFTNNASSS  SSSL+LRTSFLALPLKSH N+N+  QFP  RTT
Sbjct: 1   MSVISISSASTSKRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNVRFQFPRPRTT 60

Query: 61  RRTNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDG 120
           RR N+G+ VCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KTEATDG
Sbjct: 61  RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG 120

Query: 121 YSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKE 180
           YSAVQVGYRRVRDRKLTKPE+GHL+KAGAIPMRHLQEFRL ++DGFEPNQRLVFNELFKE
Sbjct: 121 YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKE 180

Query: 181 GDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240
           GDLVDVSG TIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR
Sbjct: 181 GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240

Query: 241 MGGTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           MGGTKRKIRKLKIVK+DD+LNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292

[Close]

BLAST of Carg11055 vs. ExPASy TrEMBL
Match: A0A6J1H630 (50S ribosomal protein L3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460446 PE=3 SV=1)

HSP 1 Score: 516.9 bits (1330), Expect = 5.4e-143
Identity = 265/292 (90.75%), Postives = 276/292 (94.52%), Query Frame = 0


Query: 1   MSAIPFSSASTSIRHPIFTNNASSS--SSSLRLRTSFLALPLKSHHNSNLSLQFPAQRTT 60
           MS I  S ASTS RHPIFTNNASSS  SSSL+LRTSFLALPLKSH N+NL  QFP  RTT
Sbjct: 1   MSVISISLASTSNRHPIFTNNASSSSPSSSLKLRTSFLALPLKSHRNNNLRFQFPRPRTT 60

Query: 61  RRTNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDG 120
           RR N+G+ VCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQ+KTEATDG
Sbjct: 61  RRPNDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQIKTEATDG 120

Query: 121 YSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKE 180
           YSAVQVGYRRVRDRKLTKPE+GHL+KAGAIPMRHLQEFRL ++DGFEPNQRLVFNELFKE
Sbjct: 121 YSAVQVGYRRVRDRKLTKPEMGHLQKAGAIPMRHLQEFRLESIDGFEPNQRLVFNELFKE 180

Query: 181 GDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240
           GDLVDVSG TIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR
Sbjct: 181 GDLVDVSGTTIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGR 240

Query: 241 MGGTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           MGGTKRKIRKLKIVK+DD+LNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 MGGTKRKIRKLKIVKIDDDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 292

[Close]

BLAST of Carg11055 vs. ExPASy TrEMBL
Match: A0A1S3CBR5 (50S ribosomal protein L3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499009 PE=3 SV=1)

HSP 1 Score: 513.8 bits (1322), Expect = 4.5e-142
Identity = 264/293 (90.10%), Postives = 276/293 (94.20%), Query Frame = 0


Query: 1   MSAIPFSSASTSIRHPIFTNN---ASSSSSSLRLRTSFLALPLKSHHNSNLSLQFPAQRT 60
           MS I FSSAS S +HPIFTNN   +SSSSSSL LRTSFLALPLKSHH +NL   FP +RT
Sbjct: 1   MSIISFSSASASTKHPIFTNNPSSSSSSSSSLTLRTSFLALPLKSHHKNNLRFHFPTRRT 60

Query: 61  TRRTNNGVPVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATD 120
           TRR ++G+ VCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATD
Sbjct: 61  TRRPSDGLSVCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATD 120

Query: 121 GYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFK 180
           GYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRL +VDGFEPNQRLVFNELFK
Sbjct: 121 GYSAVQVGYRRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLESVDGFEPNQRLVFNELFK 180

Query: 181 EGDLVDVSGITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPG 240
           EGDLVDVSG TIGKGFQGGIKRHNFKRGPM+HGSKSHRALGSIGAGTTPGRVYKGKKMPG
Sbjct: 181 EGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMPG 240

Query: 241 RMGGTKRKIRKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           RMGGTKRKIRKLKIVK+D++LNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN
Sbjct: 241 RMGGTKRKIRKLKIVKIDEDLNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 293

[Close]

BLAST of Carg11055 vs. TAIR 10
Match: AT2G43030.1 (Ribosomal protein L3 family protein )

HSP 1 Score: 392.5 bits (1007), Expect = 2.9e-109
Identity = 193/224 (86.16%), Postives = 208/224 (92.86%), Query Frame = 0


Query: 67  VCMSMEAGIGVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYSAVQVGY 126
           V  SMEAGIGVM +KLGMMSFFE DG VVPVTVVGF+EGNIVTQ+KT ATDGY AVQ+GY
Sbjct: 48  VSSSMEAGIGVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDGYDAVQIGY 107

Query: 127 RRVRDRKLTKPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGDLVDVSG 186
           RRVRD+KLTKPE GHL+KAG IPMRHLQEFRL N++GFEPNQ+LVF+E+FKEGDLVDV+G
Sbjct: 108 RRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGDLVDVAG 167

Query: 187 ITIGKGFQGGIKRHNFKRGPMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKI 246
            TIGKGFQGGIKRH+FKRG MTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGT+ KI
Sbjct: 168 TTIGKGFQGGIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTRTKI 227

Query: 247 RKLKIVKVDDELNVVMIKGAVPGKPGNLLRIAPAKIVGKNIPKN 291
           RKLKIVKVD ELNVVMIKGA+PGKPGNLLRI PAKIVG NIPKN
Sbjct: 228 RKLKIVKVDKELNVVMIKGALPGKPGNLLRITPAKIVGVNIPKN 271

[Close]

BLAST of Carg11055 vs. TAIR 10
Match: AT3G17465.1 (ribosomal protein L3 plastid )

HSP 1 Score: 142.9 bits (359), Expect = 4.1e-34
Identity = 82/206 (39.81%), Postives = 123/206 (59.71%), Query Frame = 0


Query: 76  GVMATKLGMMSFFEPDGKVVPVTVVGFKEGNIVTQVKTEATDGYSAVQVGYRRVRDRKLT 135
           G++A K GM + ++  GK +P++++ + + NIV+QVKT   +G  A+Q+G  + + + L+
Sbjct: 78  GIIAVKCGMTALWDKWGKRIPISIL-WVDDNIVSQVKTVEKEGIFALQIGCGQKKPKHLS 137

Query: 136 KPELGHLEKAGAIPMRHLQEFRLVNVDGFEPNQRLVFNELFKEGDLVDVSGITIGKGFQG 195
           K  +GH    G    R L+EF  V  D   P    +    F  G  VDV+GIT GKGFQG
Sbjct: 138 KAVVGHFRAQGVPLKRKLREFP-VTEDALLPVGTSLGVRHFVPGQYVDVTGITRGKGFQG 197

Query: 196 GIKRHNFKRGPMTHG-SKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKV 255
            +KRH F   P +HG S SHR+ GS G    PG+V+KG+KM GRMG  +R ++ + + K+
Sbjct: 198 CMKRHGFSGMPASHGASLSHRSGGSTGQRDAPGKVFKGRKMAGRMGADQRTVKNVWVYKI 257

Query: 256 DDELNVVMIKGAVPGKPGNLLRIAPA 281
           D   N++ ++G VPG  GN + I  A
Sbjct: 258 DPARNLMWVRGQVPGAEGNFVFIKDA 281

The following BLAST results are available for this feature:

BLAST of Carg11055 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515139.1	2.1e-157	100.00	50S ribosomal protein L3, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG70...	[more]
XP_022999904.1	7.9e-157	99.66	50S ribosomal protein L3, chloroplastic-like [Cucurbita maxima]	[more]
XP_022964564.1	3.0e-156	99.31	50S ribosomal protein L3, chloroplastic-like [Cucurbita moschata]	[more]
KAG6574805.1	2.2e-143	91.10	50S ribosomal protein L3, chloroplastic, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_023006396.1	5.0e-143	90.75	50S ribosomal protein L3, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Carg11055 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SKX4	4.1e-108	86.16	50S ribosomal protein L3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL...	[more]
O80360	5.4e-108	75.46	50S ribosomal protein L3, chloroplastic (Fragment) OS=Nicotiana tabacum OX=4097 ...	[more]
P82191	4.6e-107	70.95	50S ribosomal protein L3, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL3 PE=...	[more]
B0C1D3	2.1e-64	57.75	50S ribosomal protein L3 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 G...	[more]
B1XJT9	2.8e-64	59.15	50S ribosomal protein L3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR...	[more]

BLAST of Carg11055 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KIF2	3.8e-157	99.66	50S ribosomal protein L3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1HNL2	1.5e-156	99.31	50S ribosomal protein L3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1KXN5	2.4e-143	90.75	50S ribosomal protein L3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1H630	5.4e-143	90.75	50S ribosomal protein L3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A1S3CBR5	4.5e-142	90.10	50S ribosomal protein L3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499009 ...	[more]

BLAST of Carg11055 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43030.1	2.9e-109	86.16	Ribosomal protein L3 family protein	[more]
AT3G17465.1	4.1e-34	39.81	ribosomal protein L3 plastid	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000597	Ribosomal protein L3	PFAM	PF00297	Ribosomal_L3	coord: 170..256 e-value: 9.9E-18 score: 64.2
IPR019927	Ribosomal protein L3, bacterial/organelle-type	TIGRFAM	TIGR03625	TIGR03625	coord: 76..277 e-value: 5.3E-74 score: 246.4
IPR019927	Ribosomal protein L3, bacterial/organelle-type	PANTHER	PTHR11229	50S RIBOSOMAL PROTEIN L3	coord: 69..289
IPR019927	Ribosomal protein L3, bacterial/organelle-type	HAMAP	MF_01325_B	Ribosomal_L3_B	coord: 74..281 score: 35.858681
None	No IPR available	GENE3D	2.40.30.10	Translation factors	coord: 202..282 e-value: 3.4E-21 score: 77.4
None	No IPR available	GENE3D	3.30.160.810		coord: 107..166 e-value: 4.3E-20 score: 73.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 205..242
None	No IPR available	PANTHER	PTHR11229:SF16	50S RIBOSOMAL PROTEIN L3-1, CHLOROPLASTIC	coord: 69..289
IPR019926	Ribosomal protein L3, conserved site	PROSITE	PS00474	RIBOSOMAL_L3	coord: 176..199
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 73..286

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11055-RA	Carg11055-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome