Carg10930 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10930
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Actin-related protein 2/3 complex subunit 3
Location	Carg_Chr05: 11238829 .. 11241018 (+)
RNA-Seq Expression	Carg10930
Synteny	Carg10930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTAACTGTGGTTAATATTGGCATCTATTCCGTTTCACCCCTACCGCTCGCAGATATTCCGGTGGCTATTCCGACTCGCATCCACTTATCGGAACAGAAAACTCTCCGGTAAGTCTCATCGGATCATGATTGCTCATTCTGCTAACTGTAAAGCCAGAGTCGATCGAACTGCGGATTTCGAAAATTTGATTTTCTGGCTTTGAAGGATTCATTTCTAAAGTACGAGTCTGAAATTATCGCTTAGAGAGATCGATCCGCTTACGCTCACATTTTCTCCAAAGATCTTTGCAGTTGAGAAGAATTTGGATCTCGTACAGGATTGTAAGACATTGATTATTGAGAAAAATATGGTGAGGTTTCAAGTTTTGTAATGCTTTTTCAAGAATTTGGAGCTTGTTTGTGTTCTTGATCCATTTCATCAATTTTAGTGGATTAATTTTACCGTATTTCAAATGGCTGTTTCTCTCTGTATGGATTAAATTAGGACTGAGCGAGCGATTGTCTTCTAGGTTCACCACTCTAGCTTTGTGGATGAGGAAGGAATAAGCAAGGCTTGTGGATGCCCTTTATTTCCTTTGAAAAGTCATGGTCCTGCTCCAGATTCAGATCAAGGTTTAGCTCAAAGTTCAATTTGATTTATATTGTTTGTTCTCTATGCATATCATACTGAAATTGATCTTGTTTGGAAATTCACAGATAAGACTGATATTGTAGATGAAGCGATTTCATTCTTTCGTGCTAATGTCTTCTTTAGAAATTTTGATATTAAGAGTCCTGCTGATAAGCTTCTCATCTACTTAACATTCCACATCAATGTGGCTTTGAAGAGGCTTGAAGGTTGCAGAACTTTGACTGTTGGAAACAAGGCTATAATTAACTTGGGTTTGGAGAATGTCCCTGTGCCCGGAGAGCAGGGCTTTCCCTTTCCTGGTCTCTTCCCTATTCCCAAATCTAATGGGGAAGCAGGTAATGCTTGATCTTAGTTTTCTCTCTCTCTATATATATATGTACTGTACCTACAACAGCACAAACTCACCACCGCTAGTAGATATTGACTTTTTTGAGTTTTTTCCTTCTGAACTTCCTGATAAGATTTTTAAAACGCGTCTACTAGGGAGAGGTTTTCACTCCCTTGTAAGGAATACTTTGTTCTCCTCTCCAACTAAGGTGAGATCTCACAATCCACCCTATTGGGGGCCTGCGACCTTGCTGGCACGCACATTGCCCGGTGTCTTGGCTCTGGAAACATTTGTAACAGCTCAAACCGATTGCTAGCCGATAGTGTCCTCTTTGGACTTTTCCTTTCAGATTTCTCCTCAAAGTTTTTAAAGCGTGTCTACGGGGGAGAAGTTTCCACTCCTTTATAAGGAATGTTTCATTCTCCTCTCCTACCAATGCGGGATCTCACCATCCACCCCCTTTGGGGTTCACCGTCCTTGTTGGCACACCGCCCAATGTCTGGCTCTGATACCATTTGTAACAGCCCAAACCCACAGCTAGCGGATATTGGGCTTCCCCTCAAGGTTTTTAAAATGCGTCTACTAGGAAGTTTCCTTGCAAGGAATGCTTCGTTTTCCTCTTTAACCAACGTGGGATCTCACAATCCACCCCTTCGGAGCCTAGCGTTCTCGTTGACATACCACCCGGTGTTTTGCTCTGATACCATTTGTAACAGCCTAAGCCCATTGACAGATATTGTCCTCTTCAGGCTTTCCCTTTTGGAGTTCCCCTCAAAGTTTTTCAAACACATTTGCTAAGGAGAGGTTTTCACACTCCTATAAAGAATGTTTCGTTCCCCTCTCCAACCGATGTGGGATCTCATAGTACTATTTGTTAACCAGAGATGCTTCACTGCCCAATGATTATCAACCTTTTTCCTTTGCAATTGGTTTGTTTGCTGAATACAAATTAGGCACTTTGTTCTTTTCTTTTTTCAATTCAGTTGATACAGATCTTATGAGTTAATCATGTGTTCAATAGCCTCCTGTTTCTTGTCTTAGGAGTTGATAGTGTTCATAAGCTTCAAATATGTCCATTTTGATATGCAGAGCTATTCAGAGATTACTTGAAGGAGATAAGAGAAGAAACATGTGGGAGACTCTTGAGTGTTGCCTATAGAGCAAATGGAACTCCAAATAAATGGTGGTTAGCATTTGCAAAGAGGAAGTTTATGAACATCGTCACTCCT

mRNA sequence

AAATTAACTGTGGTTAATATTGGCATCTATTCCGTTTCACCCCTACCGCTCGCAGATATTCCGGTGGCTATTCCGACTCGCATCCACTTATCGGAACAGAAAACTCTCCGTACGAGTCTGAAATTATCGCTTAGAGAGATCGATCCGCTTACGCTCACATTTTCTCCAAAGATCTTTGCAGTTGAGAAGAATTTGGATCTCGTACAGGATTGTAAGACATTGATTATTGAGAAAAATATGGTTCACCACTCTAGCTTTGTGGATGAGGAAGGAATAAGCAAGGCTTGTGGATGCCCTTTATTTCCTTTGAAAAGTCATGGTCCTGCTCCAGATTCAGATCAAGATAAGACTGATATTGTAGATGAAGCGATTTCATTCTTTCGTGCTAATGTCTTCTTTAGAAATTTTGATATTAAGAGTCCTGCTGATAAGCTTCTCATCTACTTAACATTCCACATCAATGTGGCTTTGAAGAGGCTTGAAGGTTGCAGAACTTTGACTGTTGGAAACAAGGCTATAATTAACTTGGGTTTGGAGAATGTCCCTGTGCCCGGAGAGCAGGGCTTTCCCTTTCCTGAGCTATTCAGAGATTACTTGAAGGAGATAAGAGAAGAAACATGTGGGAGACTCTTGAGTGTTGCCTATAGAGCAAATGGAACTCCAAATAAATGGTGGTTAGCATTTGCAAAGAGGAAGTTTATGAACATCGTCACTCCT

Coding sequence (CDS)

AAATTAACTGTGGTTAATATTGGCATCTATTCCGTTTCACCCCTACCGCTCGCAGATATTCCGGTGGCTATTCCGACTCGCATCCACTTATCGGAACAGAAAACTCTCCGTACGAGTCTGAAATTATCGCTTAGAGAGATCGATCCGCTTACGCTCACATTTTCTCCAAAGATCTTTGCAGTTGAGAAGAATTTGGATCTCGTACAGGATTGTAAGACATTGATTATTGAGAAAAATATGGTTCACCACTCTAGCTTTGTGGATGAGGAAGGAATAAGCAAGGCTTGTGGATGCCCTTTATTTCCTTTGAAAAGTCATGGTCCTGCTCCAGATTCAGATCAAGATAAGACTGATATTGTAGATGAAGCGATTTCATTCTTTCGTGCTAATGTCTTCTTTAGAAATTTTGATATTAAGAGTCCTGCTGATAAGCTTCTCATCTACTTAACATTCCACATCAATGTGGCTTTGAAGAGGCTTGAAGGTTGCAGAACTTTGACTGTTGGAAACAAGGCTATAATTAACTTGGGTTTGGAGAATGTCCCTGTGCCCGGAGAGCAGGGCTTTCCCTTTCCTGAGCTATTCAGAGATTACTTGAAGGAGATAAGAGAAGAAACATGTGGGAGACTCTTGAGTGTTGCCTATAGAGCAAATGGAACTCCAAATAAATGGTGGTTAGCATTTGCAAAGAGGAAGTTTATGAACATCGTCACTCCT

Protein sequence

KLTVVNIGIYSVSPLPLADIPVAIPTRIHLSEQKTLRTSLKLSLREIDPLTLTFSPKIFAVEKNLDLVQDCKTLIIEKNMVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFPELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP

Homology

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BLAST of Carg10930 vs. NCBI nr
Match: KAG7030362.1 (Actin-related protein 2/3 complex subunit 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 487.3 bits (1253), Expect = 7.7e-134
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0


Query: 1   KLTVVNIGIYSVSPLPLADIPVAIPTRIHLSEQKTLRTSLKLSLREIDPLTLTFSPKIFA 60
           KLTVVNIGIYSVSPLPLADIPVAIPTRIHLSEQKTLRTSLKLSLREIDPLTLTFSPKIFA
Sbjct: 1   KLTVVNIGIYSVSPLPLADIPVAIPTRIHLSEQKTLRTSLKLSLREIDPLTLTFSPKIFA 60

Query: 61  VEKNLDLVQDCKTLIIEKNMVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIV 120
           VEKNLDLVQDCKTLIIEKNMVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIV
Sbjct: 61  VEKNLDLVQDCKTLIIEKNMVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIV 120

Query: 121 DEAISFFRANVFFRNFDIKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLEN 180
           DEAISFFRANVFFRNFDIKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLEN
Sbjct: 121 DEAISFFRANVFFRNFDIKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLEN 180

Query: 181 VPVPGEQGFPFPELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 240
           VPVPGEQGFPFPELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP
Sbjct: 181 VPVPGEQGFPFPELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 239

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BLAST of Carg10930 vs. NCBI nr
Match: KAG6599373.1 (Monogalactosyldiacylglycerol synthase 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 375.9 bits (964), Expect = 2.5e-100
Identity = 185/203 (91.13%), Postives = 186/203 (91.63%), Query Frame = 0


Query: 49  PLTLTFSPKIFAVEKNLDLVQDCKTLIIEKNMVHHSSFVDEEGISKACGCPLFPLKSHGP 108
           PL  T +  IFAVEKNLDLVQDCKTLIIEKNMVHHSSFVDEEGISKACGCPLFPLKSHGP
Sbjct: 408 PLIGTENSPIFAVEKNLDLVQDCKTLIIEKNMVHHSSFVDEEGISKACGCPLFPLKSHGP 467

Query: 109 APDSDQDKTDIVDEAISFFRANVFFRNFDIKSPADKLLIYLTFHINVALKRLEGCRTLTV 168
           APDSDQDKTDIVDEAISFFRANVFFRNFDIKSPADKLLIYLTFHINVALKRLEGCRTLTV
Sbjct: 468 APDSDQDKTDIVDEAISFFRANVFFRNFDIKSPADKLLIYLTFHINVALKRLEGCRTLTV 527

Query: 169 GNKAIINLGLENVPVPGEQGFPFP------------ELFRDYLKEIREETCGRLLSVAYR 228
           GNKAIINLGLENVPVPGEQGFPFP            ELFRDYLKEIREETCGRLLSVAYR
Sbjct: 528 GNKAIINLGLENVPVPGEQGFPFPGLFPIPKSNGEAELFRDYLKEIREETCGRLLSVAYR 587

Query: 229 ANGTPNKWWLAFAKRKFMNIVTP 240
           ANGTPNKWWLAFAKRKFMNIVTP
Sbjct: 588 ANGTPNKWWLAFAKRKFMNIVTP 610

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BLAST of Carg10930 vs. NCBI nr
Match: XP_022946311.1 (actin-related protein 2/3 complex subunit 3-like [Cucurbita moschata] >XP_022946312.1 actin-related protein 2/3 complex subunit 3-like [Cucurbita moschata])

HSP 1 Score: 331.3 bits (848), Expect = 7.1e-87
Identity = 160/172 (93.02%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 80  MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK 139
           MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK
Sbjct: 1   MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK 60

Query: 140 SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP------- 199
           SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP       
Sbjct: 61  SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFPGLFPIPK 120

Query: 200 -----ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 240
                ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP
Sbjct: 121 SNGEAELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 172

[Close]

BLAST of Carg10930 vs. NCBI nr
Match: XP_023546743.1 (actin-related protein 2/3 complex subunit 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327.4 bits (838), Expect = 1.0e-85
Identity = 159/172 (92.44%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 80  MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK 139
           MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK
Sbjct: 1   MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK 60

Query: 140 SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP------- 199
           SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP       
Sbjct: 61  SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFPGLFPIPK 120

Query: 200 -----ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 240
                ELFRDYLKEIREET GRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP
Sbjct: 121 SNGEAELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 172

[Close]

BLAST of Carg10930 vs. NCBI nr
Match: XP_022999051.1 (actin-related protein 2/3 complex subunit 3-like [Cucurbita maxima])

HSP 1 Score: 318.9 bits (816), Expect = 3.6e-83
Identity = 154/172 (89.53%), Postives = 157/172 (91.28%), Query Frame = 0


Query: 80  MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK 139
           MVHHSSFVDEEGI+KACGCPL+PLKSHGPAPD DQDKTDIVDEAISFFRANVFFRNFDIK
Sbjct: 1   MVHHSSFVDEEGINKACGCPLYPLKSHGPAPDLDQDKTDIVDEAISFFRANVFFRNFDIK 60

Query: 140 SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP------- 199
           SPADKLLIYLTFHINVALKRLEGCRTLTVG+KAIINLGLENVPVPGE GFPFP       
Sbjct: 61  SPADKLLIYLTFHINVALKRLEGCRTLTVGSKAIINLGLENVPVPGEHGFPFPGLFPIPK 120

Query: 200 -----ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 240
                ELFRDYLKEIREET GRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP
Sbjct: 121 SNGEAELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 172

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BLAST of Carg10930 vs. ExPASy Swiss-Prot
Match: Q1ECJ7 (Actin-related protein 2/3 complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=ARPC3 PE=1 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.2e-76
Identity = 139/172 (80.81%), Postives = 151/172 (87.79%), Query Frame = 0


Query: 80  MVHHSSFVDEEGISKACGCPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFD 139
           MV+HSSFVDEEG++KACGCPL PLKSH  GPAP S+QDKTDIVDEAI+FFRANVFF NFD
Sbjct: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPVSEQDKTDIVDEAITFFRANVFFTNFD 60

Query: 140 IKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP----- 199
           IKSPADKLLIYLTF+INVALKRLEGCRTL VG KAIINLGLE++PVPGE GFPFP     
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSL 120

Query: 200 -------ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIV 238
                  ELFR+YLK++REET GRLLSVAYRANGTPNKWWLAFAKRKFMN+V
Sbjct: 121 PQSQDEAELFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNVV 172

[Close]

BLAST of Carg10930 vs. ExPASy Swiss-Prot
Match: Q3T035 (Actin-related protein 2/3 complex subunit 3 OS=Bos taurus OX=9913 GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 139.0 bits (349), Expect = 6.8e-32
Identity = 74/170 (43.53%), Postives = 106/170 (62.35%), Query Frame = 0


Query: 82  HHSSFVDEEGISKACG-CPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFDI 141
           +HSS +D +  +K  G   L P++S   GPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct: 4   YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 63

Query: 142 KSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPF------- 201
           K+ AD+ LIY+T +I+  LK+L+ C + + G K +  LG+ N P+PGE GFP        
Sbjct: 64  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 123

Query: 202 -----PELFRDYLKEIREETCGRLLSVAY-RANGTPNKWWLAFAKRKFMN 236
                 E+ R YL+++R+ET  RL    +   N  P+KWW  F KR+FMN
Sbjct: 124 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170

[Close]

BLAST of Carg10930 vs. ExPASy Swiss-Prot
Match: O15145 (Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens OX=9606 GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 139.0 bits (349), Expect = 6.8e-32
Identity = 74/170 (43.53%), Postives = 106/170 (62.35%), Query Frame = 0


Query: 82  HHSSFVDEEGISKACG-CPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFDI 141
           +HSS +D +  +K  G   L P++S   GPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct: 4   YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 63

Query: 142 KSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPF------- 201
           K+ AD+ LIY+T +I+  LK+L+ C + + G K +  LG+ N P+PGE GFP        
Sbjct: 64  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 123

Query: 202 -----PELFRDYLKEIREETCGRLLSVAY-RANGTPNKWWLAFAKRKFMN 236
                 E+ R YL+++R+ET  RL    +   N  P+KWW  F KR+FMN
Sbjct: 124 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170

[Close]

BLAST of Carg10930 vs. ExPASy Swiss-Prot
Match: Q9JM76 (Actin-related protein 2/3 complex subunit 3 OS=Mus musculus OX=10090 GN=Arpc3 PE=1 SV=3)

HSP 1 Score: 138.3 bits (347), Expect = 1.2e-31
Identity = 74/170 (43.53%), Postives = 106/170 (62.35%), Query Frame = 0


Query: 82  HHSSFVDEEGISKACG-CPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFDI 141
           +HSS +D +  +K  G   L PL+S   GPAP   +D TDIVDEAI +F+ANVFF+N++I
Sbjct: 4   YHSSLMDPD--TKLIGNMALLPLRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEI 63

Query: 142 KSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPF------- 201
           K+ AD+ LIY+T +I+  LK+L+ C + + G K +  LG+ N P+PGE GFP        
Sbjct: 64  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 123

Query: 202 -----PELFRDYLKEIREETCGRLLSVAY-RANGTPNKWWLAFAKRKFMN 236
                 E+ R YL+++R+ET  RL    +   +  P+KWW  F KR+FMN
Sbjct: 124 ASKQEDEMMRAYLQQLRQETGLRLCEKVFDPQSDKPSKWWTCFVKRQFMN 170

[Close]

BLAST of Carg10930 vs. ExPASy Swiss-Prot
Match: A1DPK7 (Actin-related protein 2/3 complex subunit 3-A OS=Xenopus laevis OX=8355 GN=arpc3-a PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.2e-29
Identity = 65/151 (43.05%), Postives = 94/151 (62.25%), Query Frame = 0


Query: 100 LFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFDIKSPADKLLIYLTFHINVAL 159
           + P++S   GPAP   +D TDI+DEAI +F+ANVFF+N++IK+ AD+ LIY+T +I+  L
Sbjct: 21  MLPIRSQFKGPAPRETKD-TDIIDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECL 80

Query: 160 KRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPF------------PELFRDYLKEIREE 219
           K+L+ C +   G K +  LG+ N P+PGE GFP              E+ R YL+++R+E
Sbjct: 81  KKLQKCNSKGQGEKEMYTLGITNFPIPGEPGFPLNAMYVKPSNKQEDEVMRAYLQQLRQE 140

Query: 220 TCGRLLSVAY-RANGTPNKWWLAFAKRKFMN 236
           T  RL    +      P+KWW  F KR+FMN
Sbjct: 141 TGLRLCDKVFDPQTDKPSKWWTCFVKRQFMN 170

[Close]

BLAST of Carg10930 vs. ExPASy TrEMBL
Match: A0A6J1G3D5 (Actin-related protein 2/3 complex subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111450430 PE=3 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 3.4e-87
Identity = 160/172 (93.02%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 80  MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK 139
           MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK
Sbjct: 1   MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK 60

Query: 140 SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP------- 199
           SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP       
Sbjct: 61  SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFPGLFPIPK 120

Query: 200 -----ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 240
                ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP
Sbjct: 121 SNGEAELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 172

[Close]

BLAST of Carg10930 vs. ExPASy TrEMBL
Match: A0A6J1KBW6 (Actin-related protein 2/3 complex subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111493556 PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.8e-83
Identity = 154/172 (89.53%), Postives = 157/172 (91.28%), Query Frame = 0


Query: 80  MVHHSSFVDEEGISKACGCPLFPLKSHGPAPDSDQDKTDIVDEAISFFRANVFFRNFDIK 139
           MVHHSSFVDEEGI+KACGCPL+PLKSHGPAPD DQDKTDIVDEAISFFRANVFFRNFDIK
Sbjct: 1   MVHHSSFVDEEGINKACGCPLYPLKSHGPAPDLDQDKTDIVDEAISFFRANVFFRNFDIK 60

Query: 140 SPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP------- 199
           SPADKLLIYLTFHINVALKRLEGCRTLTVG+KAIINLGLENVPVPGE GFPFP       
Sbjct: 61  SPADKLLIYLTFHINVALKRLEGCRTLTVGSKAIINLGLENVPVPGEHGFPFPGLFPIPK 120

Query: 200 -----ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 240
                ELFRDYLKEIREET GRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP
Sbjct: 121 SNGEAELFRDYLKEIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 172

[Close]

BLAST of Carg10930 vs. ExPASy TrEMBL
Match: A0A1S3C5N9 (Actin-related protein 2/3 complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103496939 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 3.8e-78
Identity = 148/174 (85.06%), Postives = 153/174 (87.93%), Query Frame = 0


Query: 80  MVHHSSFVDEEGISKACGCPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFD 139
           MVHHSSFVDEEGISKACGCPL PLKSH  GPAP SDQDKTDIVDEAI+FFRANVFFRNFD
Sbjct: 1   MVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60

Query: 140 IKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP----- 199
           IKSPADKLLIYLTF+INVALKRLEGCRTL VG KAIINLGLENVPVPGE GFPFP     
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGESGFPFPGLFPI 120

Query: 200 -------ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 240
                  ELFR+YLK+IREET GRLLSVAYRANGTPNKWWLAFAKRKFMNI+ P
Sbjct: 121 PQSNEEAELFRNYLKQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 174

[Close]

BLAST of Carg10930 vs. ExPASy TrEMBL
Match: A0A6J1HLS5 (Actin-related protein 2/3 complex subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111465702 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.4e-77
Identity = 147/174 (84.48%), Postives = 153/174 (87.93%), Query Frame = 0


Query: 80  MVHHSSFVDEEGISKACGCPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFD 139
           MVHHSSFVDEEGISKACGCPL PLKSH  GPAP SDQDKTDIVDEAI+FFRANVFFRNFD
Sbjct: 1   MVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60

Query: 140 IKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP----- 199
           IKSPADKLLIYLTF+INVALKRLEGCRTL VG KAIINLGLENVPVPGE GFPFP     
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPI 120

Query: 200 -------ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 240
                  ELFR+YL++IREET GRLLSVAYRANGTPNKWWLAFAKRKFMNI+ P
Sbjct: 121 PQSNEEAELFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 174

[Close]

BLAST of Carg10930 vs. ExPASy TrEMBL
Match: A0A6J1FCE9 (Actin-related protein 2/3 complex subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111444343 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.4e-77
Identity = 147/174 (84.48%), Postives = 153/174 (87.93%), Query Frame = 0


Query: 80  MVHHSSFVDEEGISKACGCPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFD 139
           MVHHSSFVDEEGISKACGCPL PLKSH  GPAP SDQDKTDIVDEAI+FFRANVFFRNFD
Sbjct: 1   MVHHSSFVDEEGISKACGCPLLPLKSHIKGPAPVSDQDKTDIVDEAITFFRANVFFRNFD 60

Query: 140 IKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP----- 199
           IKSPADKLLIYLTF+INVALKRLEGCRTL VG KAIINLGLENVPVPGE GFPFP     
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLENVPVPGELGFPFPGLFPI 120

Query: 200 -------ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIVTP 240
                  ELFR+YL++IREET GRLLSVAYRANGTPNKWWLAFAKRKFMNI+ P
Sbjct: 121 PQSNEEAELFRNYLRQIREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNIIIP 174

[Close]

BLAST of Carg10930 vs. TAIR 10
Match: AT1G60430.1 (actin-related protein C3 )

HSP 1 Score: 287.7 bits (735), Expect = 8.4e-78
Identity = 139/172 (80.81%), Postives = 151/172 (87.79%), Query Frame = 0


Query: 80  MVHHSSFVDEEGISKACGCPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFD 139
           MV+HSSFVDEEG++KACGCPL PLKSH  GPAP S+QDKTDIVDEAI+FFRANVFF NFD
Sbjct: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPVSEQDKTDIVDEAITFFRANVFFTNFD 60

Query: 140 IKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP----- 199
           IKSPADKLLIYLTF+INVALKRLEGCRTL VG KAIINLGLE++PVPGE GFPFP     
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSL 120

Query: 200 -------ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIV 238
                  ELFR+YLK++REET GRLLSVAYRANGTPNKWWLAFAKRKFMN+V
Sbjct: 121 PQSQDEAELFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNVV 172

[Close]

BLAST of Carg10930 vs. TAIR 10
Match: AT1G60430.2 (actin-related protein C3 )

HSP 1 Score: 287.7 bits (735), Expect = 8.4e-78
Identity = 139/172 (80.81%), Postives = 151/172 (87.79%), Query Frame = 0


Query: 80  MVHHSSFVDEEGISKACGCPLFPLKSH--GPAPDSDQDKTDIVDEAISFFRANVFFRNFD 139
           MV+HSSFVDEEG++KACGCPL PLKSH  GPAP S+QDKTDIVDEAI+FFRANVFF NFD
Sbjct: 1   MVYHSSFVDEEGVTKACGCPLLPLKSHIKGPAPVSEQDKTDIVDEAITFFRANVFFTNFD 60

Query: 140 IKSPADKLLIYLTFHINVALKRLEGCRTLTVGNKAIINLGLENVPVPGEQGFPFP----- 199
           IKSPADKLLIYLTF+INVALKRLEGCRTL VG KAIINLGLE++PVPGE GFPFP     
Sbjct: 61  IKSPADKLLIYLTFYINVALKRLEGCRTLAVGTKAIINLGLEDIPVPGETGFPFPGLFSL 120

Query: 200 -------ELFRDYLKEIREETCGRLLSVAYRANGTPNKWWLAFAKRKFMNIV 238
                  ELFR+YLK++REET GRLLSVAYRANGTPNKWWLAFAKRKFMN+V
Sbjct: 121 PQSQDEAELFRNYLKQVREETSGRLLSVAYRANGTPNKWWLAFAKRKFMNVV 172

The following BLAST results are available for this feature:

BLAST of Carg10930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030362.1	7.7e-134	100.00	Actin-related protein 2/3 complex subunit 3, partial [Cucurbita argyrosperma sub...	[more]
KAG6599373.1	2.5e-100	91.13	Monogalactosyldiacylglycerol synthase 2, chloroplastic, partial [Cucurbita argyr...	[more]
XP_022946311.1	7.1e-87	93.02	actin-related protein 2/3 complex subunit 3-like [Cucurbita moschata] >XP_022946...	[more]
XP_023546743.1	1.0e-85	92.44	actin-related protein 2/3 complex subunit 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022999051.1	3.6e-83	89.53	actin-related protein 2/3 complex subunit 3-like [Cucurbita maxima]	[more]

BLAST of Carg10930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1ECJ7	1.2e-76	80.81	Actin-related protein 2/3 complex subunit 3 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
Q3T035	6.8e-32	43.53	Actin-related protein 2/3 complex subunit 3 OS=Bos taurus OX=9913 GN=ARPC3 PE=1 ...	[more]
O15145	6.8e-32	43.53	Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens OX=9606 GN=ARPC3 PE=...	[more]
Q9JM76	1.2e-31	43.53	Actin-related protein 2/3 complex subunit 3 OS=Mus musculus OX=10090 GN=Arpc3 PE...	[more]
A1DPK7	3.2e-29	43.05	Actin-related protein 2/3 complex subunit 3-A OS=Xenopus laevis OX=8355 GN=arpc3...	[more]

BLAST of Carg10930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G3D5	3.4e-87	93.02	Actin-related protein 2/3 complex subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1KBW6	1.8e-83	89.53	Actin-related protein 2/3 complex subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A1S3C5N9	3.8e-78	85.06	Actin-related protein 2/3 complex subunit 3 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
A0A6J1HLS5	1.4e-77	84.48	Actin-related protein 2/3 complex subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1FCE9	1.4e-77	84.48	Actin-related protein 2/3 complex subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of Carg10930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60430.1	8.4e-78	80.81	actin-related protein C3	[more]
AT1G60430.2	8.4e-78	80.81	actin-related protein C3	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007204	Actin-related protein 2/3 complex subunit 3	PFAM	PF04062	P21-Arc	coord: 82..235 e-value: 3.3E-48 score: 164.0
IPR007204	Actin-related protein 2/3 complex subunit 3	PANTHER	PTHR12391	ARP2/3 COMPLEX 21 KD SUBUNIT	coord: 80..237
IPR036753	Actin-related protein 2/3 complex subunit 3 superfamily	GENE3D	1.10.1760.10		coord: 80..238 e-value: 4.4E-51 score: 175.1
IPR036753	Actin-related protein 2/3 complex subunit 3 superfamily	SUPERFAMILY	69060	Arp2/3 complex 21 kDa subunit ARPC3	coord: 82..235
None	No IPR available	PANTHER	PTHR12391:SF0	ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 3	coord: 80..237

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10930-RA	Carg10930-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034314	Arp2/3 complex-mediated actin nucleation
biological_process	GO:0030833	regulation of actin filament polymerization
cellular_component	GO:0005885	Arp2/3 protein complex
cellular_component	GO:0042995	cell projection
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005856	cytoskeleton
molecular_function	GO:0051015	actin filament binding