Carg10905 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10905
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ribosomal protein L31
Location	Carg_Chr05: 11434697 .. 11435849 (-)
RNA-Seq Expression	Carg10905
Synteny	Carg10905

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCTGTCACTTCCGAATTTCTACTCATTGGGGATGATGAACATTGAACATTACACAGCCCACCAAATGTTTGACGAAATTCCTCTAGTAAGTGGTATAGCTGCATTGTACATGTTCATCGTTCGTAGCTTCCCCACGTATAAACAGGACAAGGTTGTCGATTGAGAATGGAAACTTGTGGGTTTTGATTCAAATGCAGCTTTACTGAGATAGTTCTTTTTCTGGAAACTTTAAGTTTAGGAACTAAACTATTTTCTCTAGAAGCTAAAGTACTAATTATGATTTCAGATCTATACAATGAAGAAAGGTTTGCACCCTCAAATGCAGTGGATATCATATGTCACACAGAGTGGCAGATTGATGCACGTTATGATGACCAAGATACACCATGTTGGTAAAGTCTACCACTTAAGAGCAAGGCGTCAATTAGCTGAAAGTATTGGGCAGATTGCCAAGTTCAAACGTCGTTACGAGAAAGATATTGTCGAAAATGATGAAAGTGTTGAAAAGGCTGAAAAGTGAGGTTCAATGCAAAGCACAAGGATCAGCTGTTCACTTGGATCATTATGGATTCGTTTTGTGAGTTCTAGGAATTTTAAGTTCCCTTCTATTTAATGGAGTCGATCCCTTTTCATAGTCTAGTATCTTACAGAACACCGAGTTAATTTTATAATGGTTTTCGTATGCTCTTACCATTAGATATATTGAATCTGCATTCCTATCTTCTGTTCAATAAATGTGATCATTTTCCACCTTATTTATCTAATTGTGCTTTCGAGCTCACCGGGCTTGTTGTGCTGCTTAAAGCCTATTAGAATAGTGGAGTTGTTGACTTATGTATACTCTAGTTGTTAGGTATTTAATATCTTCCCTAGCCCCTATGAATTTTAGGTTTGAATCCCTCCTAAAAGAAAGAAGATAAGTTGGGTATTCTGATGGACTACTTTGGTGTCTCAAGAGGGAGAAATTATTGAGGCTGGAACAATGTAGTTGGTAGTTTTGTACTATTTAAGATATGAGAAAGAAACTAAAAAAATTATGCCTCGTAGAGAGAAGTGGCCACAATGTGGCGATTATTGTGAGATCCCACATTAGTTGGAGTGTGGAGCGAAACATTTTTTATAAGGGTGTGGAAACCTCTACTTAGCAA

mRNA sequence

ATGTGGCTGTCACTTCCGAATTTCTACTCATTGGGGATGATGAACATTGAACATTACACAGCCCACCAAATGTTTGACGAAATTCCTCTAGTAAGTGGTATAGCTGCATTGTACATGTTCATCGTTCGTAGCTTCCCCACGTATAAACAGGACAAGATCTATACAATGAAGAAAGGTTTGCACCCTCAAATGCAGTGGATATCATATGTCACACAGAGTGGCAGATTGATGCACGTTATGATGACCAAGATACACCATGTTGGTAAAGTCTACCACTTAAGAGCAAGGCGTCAATTAGCTGAAAGTATTGGGCAGATTGCCAAGTTCAAACGTCGTTACGAGAAAGATATTGTCGAAAATGATGAAAGTGTTGAAAAGGCTGAAAAGTGAGGTTCAATGCAAAGCACAAGGATCAGCTGTTCACTTGGATCATTATGGATTCGTTTTGTGAGTTCTAGGAATTTTAAGTTCCCTTCTATTTAATGGAGTCGATCCCTTTTCATAGTCTAGTATCTTACAGAACACCGAGTTAATTTTATAATGGTTTTCGTATGCTCTTACCATTAGATATATTGAATCTGCATTCCTATCTTCTGTTCAATAAATGTGATCATTTTCCACCTTATTTATCTAATTGTGCTTTCGAGCTCACCGGGCTTGTTGTGCTGCTTAAAGCCTATTAGAATAGTGGAGTTGTTGACTTATGTATACTCTAGTTGTTAGGTATTTAATATCTTCCCTAGCCCCTATGAATTTTAGGTTTGAATCCCTCCTAAAAGAAAGAAGATAAGTTGGGTATTCTGATGGACTACTTTGGTGTCTCAAGAGGGAGAAATTATTGAGGCTGGAACAATGTAGTTGGTAGTTTTGTACTATTTAAGATATGAGAAAGAAACTAAAAAAATTATGCCTCGTAGAGAGAAGTGGCCACAATGTGGCGATTATTGTGAGATCCCACATTAGTTGGAGTGTGGAGCGAAACATTTTTTATAAGGGTGTGGAAACCTCTACTTAGCAA

Coding sequence (CDS)

ATGTGGCTGTCACTTCCGAATTTCTACTCATTGGGGATGATGAACATTGAACATTACACAGCCCACCAAATGTTTGACGAAATTCCTCTAGTAAGTGGTATAGCTGCATTGTACATGTTCATCGTTCGTAGCTTCCCCACGTATAAACAGGACAAGATCTATACAATGAAGAAAGGTTTGCACCCTCAAATGCAGTGGATATCATATGTCACACAGAGTGGCAGATTGATGCACGTTATGATGACCAAGATACACCATGTTGGTAAAGTCTACCACTTAAGAGCAAGGCGTCAATTAGCTGAAAGTATTGGGCAGATTGCCAAGTTCAAACGTCGTTACGAGAAAGATATTGTCGAAAATGATGAAAGTGTTGAAAAGGCTGAAAAGTGA

Protein sequence

MWLSLPNFYSLGMMNIEHYTAHQMFDEIPLVSGIAALYMFIVRSFPTYKQDKIYTMKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEKDIVENDESVEKAEK

Homology

[Close]

BLAST of Carg10905 vs. NCBI nr
Match: KAG7030387.1 (hypothetical protein SDJN02_08734, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 260.0 bits (663), Expect = 1.1e-65
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MWLSLPNFYSLGMMNIEHYTAHQMFDEIPLVSGIAALYMFIVRSFPTYKQDKIYTMKKGL 60
           MWLSLPNFYSLGMMNIEHYTAHQMFDEIPLVSGIAALYMFIVRSFPTYKQDKIYTMKKGL
Sbjct: 1   MWLSLPNFYSLGMMNIEHYTAHQMFDEIPLVSGIAALYMFIVRSFPTYKQDKIYTMKKGL 60

Query: 61  HPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEKDIVEN 120
           HPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEKDIVEN
Sbjct: 61  HPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEKDIVEN 120

Query: 121 DESVEKAEK 130
           DESVEKAEK
Sbjct: 121 DESVEKAEK 129

[Close]

BLAST of Carg10905 vs. NCBI nr
Match: XP_023547264.1 (uncharacterized protein LOC111806134 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.4 bits (368), Expect = 1.7e-31
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115
           MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAES+GQIAKFKRRYEK
Sbjct: 1   MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESVGQIAKFKRRYEK 60

Query: 116 DIVENDESVEKAEK 130
           DIVENDESVEKAEK
Sbjct: 61  DIVENDESVEKAEK 74

[Close]

BLAST of Carg10905 vs. NCBI nr
Match: XP_022946219.1 (uncharacterized protein LOC111450371 [Cucurbita moschata])

HSP 1 Score: 145.2 bits (365), Expect = 3.9e-31
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115
           MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYH RARRQLAESIGQIAKFKRRYEK
Sbjct: 1   MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAESIGQIAKFKRRYEK 60

Query: 116 DIVENDESVEKAEK 130
           DIVENDESVEKAEK
Sbjct: 61  DIVENDESVEKAEK 74

[Close]

BLAST of Carg10905 vs. NCBI nr
Match: XP_022999184.1 (uncharacterized protein LOC111493644 [Cucurbita maxima])

HSP 1 Score: 141.7 bits (356), Expect = 4.3e-30
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115
           MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVY  RARRQLAES+GQIAKFKRRYEK
Sbjct: 1   MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYQFRARRQLAESVGQIAKFKRRYEK 60

Query: 116 DIVENDESVEKAEK 130
           DIVENDESVEKAEK
Sbjct: 61  DIVENDESVEKAEK 74

[Close]

BLAST of Carg10905 vs. NCBI nr
Match: XP_022143125.1 (uncharacterized protein LOC111013069 [Momordica charantia] >XP_022143126.1 uncharacterized protein LOC111013069 [Momordica charantia])

HSP 1 Score: 128.3 bits (321), Expect = 4.9e-26
Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115
           MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYH RA+RQ+AES+GQIAKFKRRYEK
Sbjct: 1   MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRAKRQMAESVGQIAKFKRRYEK 60

Query: 116 DIVENDESVEK 127
            I EN E+ EK
Sbjct: 61  GIAENVENAEK 71

[Close]

BLAST of Carg10905 vs. ExPASy TrEMBL
Match: A0A6J1G367 (uncharacterized protein LOC111450371 OS=Cucurbita moschata OX=3662 GN=LOC111450371 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.9e-31
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115
           MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYH RARRQLAESIGQIAKFKRRYEK
Sbjct: 1   MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRARRQLAESIGQIAKFKRRYEK 60

Query: 116 DIVENDESVEKAEK 130
           DIVENDESVEKAEK
Sbjct: 61  DIVENDESVEKAEK 74

[Close]

BLAST of Carg10905 vs. ExPASy TrEMBL
Match: A0A6J1KGB8 (uncharacterized protein LOC111493644 OS=Cucurbita maxima OX=3661 GN=LOC111493644 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.1e-30
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115
           MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVY  RARRQLAES+GQIAKFKRRYEK
Sbjct: 1   MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYQFRARRQLAESVGQIAKFKRRYEK 60

Query: 116 DIVENDESVEKAEK 130
           DIVENDESVEKAEK
Sbjct: 61  DIVENDESVEKAEK 74

[Close]

BLAST of Carg10905 vs. ExPASy TrEMBL
Match: A0A6J1CPB3 (uncharacterized protein LOC111013069 OS=Momordica charantia OX=3673 GN=LOC111013069 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.4e-26
Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115
           MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYH RA+RQ+AES+GQIAKFKRRYEK
Sbjct: 1   MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRAKRQMAESVGQIAKFKRRYEK 60

Query: 116 DIVENDESVEK 127
            I EN E+ EK
Sbjct: 61  GIAENVENAEK 71

[Close]

BLAST of Carg10905 vs. ExPASy TrEMBL
Match: A0A438JVT6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_009826 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.8e-24
Identity = 58/71 (81.69%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 52  KIYTMKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKR 111
           K++ MKKGLHPQMQWISYVTQSGRLMHVMMT+IH VGKVYHLRARRQ+A+S+GQIAKFKR
Sbjct: 126 KMWKMKKGLHPQMQWISYVTQSGRLMHVMMTRIHSVGKVYHLRARRQMAQSVGQIAKFKR 185

Query: 112 RYEKDIVENDE 123
           RYE+   EN+E
Sbjct: 186 RYEQKNEENEE 196

[Close]

BLAST of Carg10905 vs. ExPASy TrEMBL
Match: A0A7J6DN63 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_020635 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.9e-23
Identity = 55/68 (80.88%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115
           M+KGLHPQMQWISYVTQSGRLMH+MMTKIHHVGKVYHL+A+RQ+AES+GQIAKF++RYEK
Sbjct: 1   MRKGLHPQMQWISYVTQSGRLMHIMMTKIHHVGKVYHLKAKRQMAESVGQIAKFRQRYEK 60

Query: 116 DIVENDES 124
               N ES
Sbjct: 61  QAPGNSES 68

[Close]

BLAST of Carg10905 vs. TAIR 10
Match: AT5G55125.1 (Ribosomal protein L31 )

HSP 1 Score: 110.5 bits (275), Expect = 9.9e-25
Identity = 55/74 (74.32%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115
           MKKGLHPQMQWISYVTQSGRLMHVMMT+IHHVGKVYH  A+RQ+A+SIGQIAKFKRR+  
Sbjct: 1   MKKGLHPQMQWISYVTQSGRLMHVMMTRIHHVGKVYHFGAKRQMAQSIGQIAKFKRRF-- 60

Query: 116 DIVENDESVEKAEK 130
               N++  E AE+
Sbjct: 61  ----NEQEAEAAEE 68

[Close]

BLAST of Carg10905 vs. TAIR 10
Match: AT5G55125.2 (Ribosomal protein L31 )

HSP 1 Score: 110.5 bits (275), Expect = 9.9e-25
Identity = 55/74 (74.32%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 56  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHLRARRQLAESIGQIAKFKRRYEK 115
           MKKGLHPQMQWISYVTQSGRLMHVMMT+IHHVGKVYH  A+RQ+A+SIGQIAKFKRR+  
Sbjct: 1   MKKGLHPQMQWISYVTQSGRLMHVMMTRIHHVGKVYHFGAKRQMAQSIGQIAKFKRRF-- 60

Query: 116 DIVENDESVEKAEK 130
               N++  E AE+
Sbjct: 61  ----NEQEAEAAEE 68

The following BLAST results are available for this feature:

BLAST of Carg10905 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030387.1	1.1e-65	100.00	hypothetical protein SDJN02_08734, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023547264.1	1.7e-31	98.65	uncharacterized protein LOC111806134 [Cucurbita pepo subsp. pepo]	[more]
XP_022946219.1	3.9e-31	98.65	uncharacterized protein LOC111450371 [Cucurbita moschata]	[more]
XP_022999184.1	4.3e-30	95.95	uncharacterized protein LOC111493644 [Cucurbita maxima]	[more]
XP_022143125.1	4.9e-26	87.32	uncharacterized protein LOC111013069 [Momordica charantia] >XP_022143126.1 uncha...	[more]

BLAST of Carg10905 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg10905 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G367	1.9e-31	98.65	uncharacterized protein LOC111450371 OS=Cucurbita moschata OX=3662 GN=LOC1114503...	[more]
A0A6J1KGB8	2.1e-30	95.95	uncharacterized protein LOC111493644 OS=Cucurbita maxima OX=3661 GN=LOC111493644...	[more]
A0A6J1CPB3	2.4e-26	87.32	uncharacterized protein LOC111013069 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A438JVT6	3.8e-24	81.69	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_009826 PE=4 SV=1	[more]
A0A7J6DN63	1.9e-23	80.88	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_020635 PE=4 SV=1	[more]

BLAST of Carg10905 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55125.1	9.9e-25	74.32	Ribosomal protein L31	[more]
AT5G55125.2	9.9e-25	74.32	Ribosomal protein L31	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37264	RIBOSOMAL PROTEIN L31	coord: 45..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10905-RA	Carg10905-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome