Carg10886 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10886
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr05: 11529119 .. 11532819 (+)
RNA-Seq ExpressionCarg10886
SyntenyCarg10886
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATCAAATCGACAGCCGCCGGTTCCGCCTCCGCCATGGCCGCGCCCTTCGATTCCAATTCTCGGTCAGTCCTCGAAACATTCTTCAGTGTTCGATTCATTTTAATTCCCATTAGCGATGATTTTCTGAATCTCCCATCGGATTCTTTTGTGCTGAAAAGGGAGGCTGTTCCGAAGAAGCGATCAGCTCCAATCAAGTTCTTGGTTCCTCTGATTTATGCCCCTGTTCTTCCTCTCAGTAAGTTTAATCCTCTGGGGTTTTCATTTTTTCCAGATTTTGTAATGATTTTCCATCTGGGTTTTGTTCGAACGTGATTCTATTTTTGATTTTCAGTCAGAATTGCGCTGCGGAAGAACCCTGTTATGAGGGATCGGCTGTTCACGGCGGTTTTGGCTGGTGCTTTTGCCCATGGCTTTTACTTGGTGTATCCTTTTAAACCCTTATATCTGCTTTAATCATTGATCATATCATATTGAATGCCAGTTCTTGAATCTTGGAATTTTCATGCTTCTCTGTTCATTTGTTGATGATCTGCATCCGCTGTTTCTTAAAAGTGTGTCTTCTTGTTTGAGAATTGTTATGGTATTTTAGTAGAGGTGTAGTCAGGTCAAACTGTTGAGAATTGTTGGGAGAAGAGTCCCCACATTGGATTGATCATGGGTTTATAAGTAAGGAATATATCTTCATTGGTATGAGGCCTTTCCGGGAAACCAAAAGTAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGGGTCGTGGTTTCAAACATGGTATCATAGTTATGCCCTTGGCTTAGCCATGTCAATAGAGTCCGCAAGTGTCGAATAAAACAGTTGTGAGCCTCGAAGGTGTAATCCAAAGTGACTCAAGTGTTGAACAAAGGGGTGTACTTTGTTAGAGGGGTTCAGAGAAGGAGTCGAATCTCGATTAAGGGGAGAGGCTGTTGTGGACTCCATAGGTCTCAGGGGAGACACTATGGTGTACTTTGTTTGAGAGGAGGATTGTTGGGAGAGGAGTCCCGGCCTTTTGGGAAAACCTAAAGCAAAACTATGAGAGCTTATGCTCAAAGTGGATAATATCATACTATTGTGGAGATTCGTGGTTCCTAACACAAATCGTTGTCTCGTAAGTATAGTAGAGGTGTGTACAATTTGGCTCGGACACTCGTGGATCTATAAAGAGAGGTTAGTGTTTAATTATGGAGTTTTTCTTTGTGAATTCATGAGTGAAATTTGTTGGGTTTCTGAATGTTGTTGATCTAGTGTACAAATGAATCAAGGCTTTGATGGCTCCTGAGGTGTGTTCATAGGTCTCAAGAGAAGCTAAAGGCTTTGATGGCTCCTGAGGCGTGTTCATAGGTCTCAAGAGAAGTTAGTGATTTCAATTGTGAGATCTCACCTCAGTTGGAGAGGGAAACGAAACATTTTAATATGGGTGTTGAAACCTCTCCCTAGCAGATGCGTTTTAAAAATCTTGAGGGAAACTCCGAGAGAGAAAGTCCAAAGAGGACAATATCTGATAGCGGTGGGCTTGGATTGTCACAAATGGTATCAGAGACAGTCACCGGGCGTTGTACCAGTAAGGTTGTTGAGCCCCAAAGAGGGATGGATTGTGAGATCTTACGTCGATTAGAGAGAGGAATGAGTGCCAGTAAGGACGTTGGGCCCTGTAGGAGGGTGGATTGTGAGATCCCACGTCGATTGGAGAGGGGAACGAAACATTTGTTAAGGGTGTGGAACCTCTCCCTAGCAGACGCATTTTAAAAATCTTAAGGGTAAGCGCGAAAGAGAAAGCCCAAAGAGAACAATATCTGCTAGCGGTGGGCTTGAACTGTTACATCGCTTATTGTCAGGGGATGAATGCAAGTTAAAGAACGAGCTGCGCGGTTTTACTATTAAGGTTAAGCAATCTGAATTAAGCAGATGAATGAGTTATAGAACAACGCACCAACAATGGGAGGTTTGAGAGTAGCTCAATTAGCTGAAGGTATGAGAATATGAAACTCACTTTTTCCTATTCCAAAAGTTAAAAGGGTTTGTATAAGTGGGTTGGATCAGGTCGGGTTTCATGCAAAATCGACCCGTCCCCACCTAGTTCGTTTTCACAGAAAAGAGACCTGATTGTCGTTAGAGAAAAATCAAGATGAAAATAAGGTTGATGTCGATTTTAGCTACATCATGGAGAGTGAGAGTTGACGGCATAGGAGTTACGTGTCACAATCGCAGTTTTGTGGTAACAGGACAGTGATTGTGCAACACTTGTTCTAATCCCGTGAACAATTCAACCGTGTGAATTTGAGGTCATGTTTGAGAGAAATATTTTGAAAAACGTGAGCGAGGTCATACGTTGTACACAATGTTATAAACTAAAAGTGAGTAGGGAACAATGACGACTTAGATAGCATACAACCTGTAAGAAATTGACAACTAGCCACATCCCTTATAGTACATTTTGGGTCATTTTAACCTTGCCATGTGTAAACATAATTTTGGTAACCAGTAGTAAAGGCCTATCAACATGGAAGCAAGTAAAAGGGGTTTGGAACAAGCATGCAGCCAGGACAACACGTTCTGTACAAGCATGACCAGGACAATCGTCGTGTAACCTTAGGCAACACATCTTGGACAAGTATGATCATGCACTATGTAGTCAACGGTTACCGTGAGTACTAAGTGACACAAGGAAAAACTCGAGAGGAAGAAGAACGGTTGAATTTGAGAAAGAAAGGTCGGTTTTGTTTGATCAAAACTGAGAGCCGTACTGACCAAGGTCCAGTCCGATTTTCGGTTCGGTTCCTTTCGCCATTGTATTGTTGAGTATAAACATCATTTTTGTTTGTTTTATTTCATAATTGTGTTGTGTTCCTTGATGGGTATATTCAGAAGTGATATCTATGATGCTGAGAGCAAGTGAACTCAATTCCCCATCTCCACATGATCATGATCATGATCATGATGATGCTGTGAGTTTTTTGATCCAATAATTCTCATCATTTTTTTTAATGCCTTCGCTTTGAACAATGAATTTAATTTTTTGAGTATAATTTTAGGAACTGATTCGTTATTTAATAGTTACTCGAAATGAATAATAGTATGGATATGTTCATCAGATTCCATTTTTAATAATTACATGTTATTATAAAGATGAAGAAAGAATGTGAGAGATTATAAGATTGGGGTACCCGTTGAATCACCGCCACCGGAATCTCACATTCTTCTTCCCCTTCCTCTTAATCTATTTTCCGGTGTCATTCTTAGTGTTCGAGAAATCGGAAGCCAGCCGAGATGCGACGCCCGAATGGTACATTCCGTCCTGAAAACAATCGGTTTTCGACGTCATAATTCGGAGTTGCCTCGCTTTCTCTGCTGTTAAGCCACCGGGAGAGAATCGGCTCCCCGCTGCCTTCTCTGCCGAATTCGAATCCGAATTAGGATTTGGCTGCGCACCCTCGGTGATTTTGTTCGGCGGGCAAGGTTTCCACCAGGGCCTGTAATGGCGCTGGGGATCTGATTTCCGGTGACCGGTGCCGGCGCTGGCAGAGGGTCGGATTCCGATGGGGCGGAAGACGAGTAGATTGGTGGTCATTTTTTTGGGGAGTGGAAGGTATGAATTGGTTGGCTTTTAACCTTGTAATTATATCCAAATAAAGATATCATAATAATAGTTAATTTCTATTCCACAAAA

mRNA sequence

CATCAAATCGACAGCCGCCGGTTCCGCCTCCGCCATGGCCGCGCCCTTCGATTCCAATTCTCGGGAGGCTGTTCCGAAGAAGCGATCAGCTCCAATCAAGTTCTTGGTTCCTCTGATTTATGCCCCTGTTCTTCCTCTCATCAGAATTGCGCTGCGGAAGAACCCTGTTATGAGGGATCGGCTGTTCACGGCGGTTTTGGCTGAAGTGATATCTATGATGCTGAGAGCAAGTGAACTCAATTCCCCATCTCCACATGATCATGATCATGATCATGATGATGCTTGTTCGAGAAATCGGAAGCCAGCCGAGATGCGACGCCCGAATGGTACATTCCGTCCTGAAAACAATCGGTTTTCGACGTCATAATTCGGAGTTGCCTCGCTTTCTCTGCTGTTAAGCCACCGGGAGAGAATCGGCTCCCCGCTGCCTTCTCTGCCGAATTCGAATCCGAATTAGGATTTGGCTGCGCACCCTCGGTGATTTTGTTCGGCGGGCAAGGTTTCCACCAGGGCCTGTAATGGCGCTGGGGATCTGATTTCCGGTGACCGGTGCCGGCGCTGGCAGAGGGTCGGATTCCGATGGGGCGGAAGACGAGTAGATTGGTGGTCATTTTTTTGGGGAGTGGAAGGTATGAATTGGTTGGCTTTTAACCTTGTAATTATATCCAAATAAAGATATCATAATAATAGTTAATTTCTATTCCACAAAA

Coding sequence (CDS)

ATGGCCGCGCCCTTCGATTCCAATTCTCGGGAGGCTGTTCCGAAGAAGCGATCAGCTCCAATCAAGTTCTTGGTTCCTCTGATTTATGCCCCTGTTCTTCCTCTCATCAGAATTGCGCTGCGGAAGAACCCTGTTATGAGGGATCGGCTGTTCACGGCGGTTTTGGCTGAAGTGATATCTATGATGCTGAGAGCAAGTGAACTCAATTCCCCATCTCCACATGATCATGATCATGATCATGATGATGCTTGTTCGAGAAATCGGAAGCCAGCCGAGATGCGACGCCCGAATGGTACATTCCGTCCTGAAAACAATCGGTTTTCGACGTCATAA

Protein sequence

MAAPFDSNSREAVPKKRSAPIKFLVPLIYAPVLPLIRIALRKNPVMRDRLFTAVLAEVISMMLRASELNSPSPHDHDHDHDDACSRNRKPAEMRRPNGTFRPENNRFSTS
Homology
[Close]
BLAST of Carg10886 vs. NCBI nr
Match: KAG7030405.1 (hypothetical protein SDJN02_08752 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216.9 bits (551), Expect = 9.0e-53
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 

Query: 1   MAAPFDSNSREAVPKKRSAPIKFLVPLIYAPVLPLIRIALRKNPVMRDRLFTAVLAEVIS 60
           MAAPFDSNSREAVPKKRSAPIKFLVPLIYAPVLPLIRIALRKNPVMRDRLFTAVLAEVIS
Sbjct: 1   MAAPFDSNSREAVPKKRSAPIKFLVPLIYAPVLPLIRIALRKNPVMRDRLFTAVLAEVIS 60

Query: 61  MMLRASELNSPSPHDHDHDHDDACSRNRKPAEMRRPNGTFRPENNRFSTS 111
           MMLRASELNSPSPHDHDHDHDDACSRNRKPAEMRRPNGTFRPENNRFSTS
Sbjct: 61  MMLRASELNSPSPHDHDHDHDDACSRNRKPAEMRRPNGTFRPENNRFSTS 110

[Close]
BLAST of Carg10886 vs. NCBI nr
Match: KAG6599415.1 (hypothetical protein SDJN03_09193, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108.2 bits (269), Expect = 4.5e-20
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MAAPFDSNSREAVPKKRSAPIKFLVPLIYAPVLPLIRIALRKNPVMRDRLFTAVLA 57
          MAAPFDSNSREAVPKKRSAPIKFLVPLIYAPVLPLIRIALRKNPVMRDRLFTAVLA
Sbjct: 1  MAAPFDSNSREAVPKKRSAPIKFLVPLIYAPVLPLIRIALRKNPVMRDRLFTAVLA 56

[Close]
BLAST of Carg10886 vs. NCBI nr
Match: XP_023546130.1 (uncharacterized protein LOC111805333 [Cucurbita pepo subsp. pepo] >XP_023546131.1 uncharacterized protein LOC111805333 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.8 bits (268), Expect = 5.9e-20
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MAAPFDSNSREAVPKKRSAPIKFLVPLIYAPVLPLIRIALRKNPVMRDRLFTAVLA 57
          MAAPFDSNSREAVPKKRSAPIKFLVPL+YAPVLPLIRIALRKNPVMRDRLFTAVLA
Sbjct: 1  MAAPFDSNSREAVPKKRSAPIKFLVPLVYAPVLPLIRIALRKNPVMRDRLFTAVLA 56

[Close]
BLAST of Carg10886 vs. NCBI nr
Match: XP_022946445.1 (uncharacterized protein LOC111450499 [Cucurbita moschata] >XP_022946446.1 uncharacterized protein LOC111450499 [Cucurbita moschata])

HSP 1 Score: 107.1 bits (266), Expect = 1.0e-19
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MAAPFDSNSREAVPKKRSAPIKFLVPLIYAPVLPLIRIALRKNPVMRDRLFTAVLA 57
          MAAPFDSNSREAVPK+RSAPIKFLVPLIYAPVLPLIRIALRKNPVMRDRLFTAVLA
Sbjct: 1  MAAPFDSNSREAVPKRRSAPIKFLVPLIYAPVLPLIRIALRKNPVMRDRLFTAVLA 56

[Close]
BLAST of Carg10886 vs. NCBI nr
Match: XP_022999556.1 (uncharacterized protein LOC111493883 [Cucurbita maxima])

HSP 1 Score: 104.8 bits (260), Expect = 5.0e-19
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 1  MAAPFDSNSREAVPKKRSAPIKFLVPLIYAPVLPLIRIALRKNPVMRDRLFTAVLA 57
          MAAPFDSNSRE VPKKRSAPIKFLVPL+YAPVLPLIRIALRKNPV+RDRLFTAVLA
Sbjct: 1  MAAPFDSNSREGVPKKRSAPIKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLA 56

[Close]
BLAST of Carg10886 vs. ExPASy TrEMBL
Match: A0A6J1G3Q4 (uncharacterized protein LOC111450499 OS=Cucurbita moschata OX=3662 GN=LOC111450499 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.9e-20
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MAAPFDSNSREAVPKKRSAPIKFLVPLIYAPVLPLIRIALRKNPVMRDRLFTAVLA 57
          MAAPFDSNSREAVPK+RSAPIKFLVPLIYAPVLPLIRIALRKNPVMRDRLFTAVLA
Sbjct: 1  MAAPFDSNSREAVPKRRSAPIKFLVPLIYAPVLPLIRIALRKNPVMRDRLFTAVLA 56

[Close]
BLAST of Carg10886 vs. ExPASy TrEMBL
Match: A0A6J1KDE7 (uncharacterized protein LOC111493883 OS=Cucurbita maxima OX=3661 GN=LOC111493883 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.4e-19
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0 

Query: 1  MAAPFDSNSREAVPKKRSAPIKFLVPLIYAPVLPLIRIALRKNPVMRDRLFTAVLA 57
          MAAPFDSNSRE VPKKRSAPIKFLVPL+YAPVLPLIRIALRKNPV+RDRLFTAVLA
Sbjct: 1  MAAPFDSNSREGVPKKRSAPIKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLA 56

[Close]
BLAST of Carg10886 vs. ExPASy TrEMBL
Match: A0A6J1HSI9 (uncharacterized protein LOC111465738 OS=Cucurbita maxima OX=3661 GN=LOC111465738 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-16
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1  MAAPFDSNSREAVPKKRSAPIKFLVPLIYAPVLPLIRIALRKNPVMRDRLFTAVLA 57
          MA+P+D  SREA PKK+SAP KFLVPLIYAPVLPLIRIALRKNPV+RDRLFTAVLA
Sbjct: 1  MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLA 56

[Close]
BLAST of Carg10886 vs. ExPASy TrEMBL
Match: A0A6J1FDN8 (uncharacterized protein LOC111444436 OS=Cucurbita moschata OX=3662 GN=LOC111444436 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-16
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1   MAAPFDSNSREAVPKKRSAPIKFLVPLIYAPVLPLIRIALRKNPVMRDRLFTAVLA 57
           MA+P+D  SREA PKK+SAP KFLVPLIYAPVLPLIRIALRKNPV+RDRLFTAVLA
Sbjct: 79  MASPYDPTSREAFPKKKSAPFKFLVPLIYAPVLPLIRIALRKNPVVRDRLFTAVLA 134

[Close]
BLAST of Carg10886 vs. ExPASy TrEMBL
Match: A0A6J1CPL9 (uncharacterized protein LOC111013138 OS=Momordica charantia OX=3673 GN=LOC111013138 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-15
Identity = 47/56 (83.93%), Postives = 52/56 (92.86%), Query Frame = 0 

Query: 1  MAAPFDSNSREAVPKKRSAPIKFLVPLIYAPVLPLIRIALRKNPVMRDRLFTAVLA 57
          MAAP+D  +REAV KK+ APIKFLVPL+YAPVLPLIRIALRKNPV+RDRLFTAVLA
Sbjct: 1  MAAPYDPATREAVRKKQGAPIKFLVPLVYAPVLPLIRIALRKNPVVRDRLFTAVLA 56

[Close]
BLAST of Carg10886 vs. TAIR 10
Match: AT1G68680.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; Has 20 Blast hits to 20 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.3 bits (155), Expect = 6.9e-11
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 0 

Query: 1  MAAPFDSNSREAVPKKRSAPIKFLVPLIYAPVLPLIRIALRKNPVMRDRLFTAVL 56
          MA+  D +      KK+ APIKFLVPLIYAP LPLIR++LR  PV+RDRLF  VL
Sbjct: 1  MASSSDPSKPVMERKKKGAPIKFLVPLIYAPALPLIRLSLRHKPVLRDRLFGLVL 55

The following BLAST results are available for this feature:
BLAST of Carg10886 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7030405.19.0e-53100.00hypothetical protein SDJN02_08752 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6599415.14.5e-20100.00hypothetical protein SDJN03_09193, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023546130.15.9e-2098.21uncharacterized protein LOC111805333 [Cucurbita pepo subsp. pepo] >XP_023546131.... [more]
XP_022946445.11.0e-1998.21uncharacterized protein LOC111450499 [Cucurbita moschata] >XP_022946446.1 unchar... [more]
XP_022999556.15.0e-1994.64uncharacterized protein LOC111493883 [Cucurbita maxima][more]
BLAST of Carg10886 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10886 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G3Q44.9e-2098.21uncharacterized protein LOC111450499 OS=Cucurbita moschata OX=3662 GN=LOC1114504... [more]
A0A6J1KDE72.4e-1994.64uncharacterized protein LOC111493883 OS=Cucurbita maxima OX=3661 GN=LOC111493883... [more]
A0A6J1HSI91.5e-1685.71uncharacterized protein LOC111465738 OS=Cucurbita maxima OX=3661 GN=LOC111465738... [more]
A0A6J1FDN81.5e-1685.71uncharacterized protein LOC111444436 OS=Cucurbita moschata OX=3662 GN=LOC1114444... [more]
A0A6J1CPL91.2e-1583.93uncharacterized protein LOC111013138 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
BLAST of Carg10886 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G68680.16.9e-1161.82unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..96
NoneNo IPR availablePANTHERPTHR37713OS05G0176600 PROTEINcoord: 1..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10886-RACarg10886-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane