Carg10860 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10860
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionProtein NUCLEAR FUSION DEFECTIVE 6
LocationCarg_Chr05: 11714730 .. 11719907 (-)
RNA-Seq ExpressionCarg10860
SyntenyCarg10860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCCTTAAGGGCAGTCTCTCGGCTATCATCTCGCCTGCAATCTCTCGCTCCAAAGCTCAACAAAAGGTCTCCATCTTCTGAGCTCTCTCCATTCAAATCGGCTTGTCAATCTCAGCCCTCTGCAGCTTCTACATCGCGTGTTTCTTGCACTTCGCGGTGAGACTTGTCTCTTTTCTCCATTTCCAATCTCATTTGTCATTTCATCAAATAATCATTACAGAAATGGATTCGGTTCAATTCCTTACTATGGAATAGATTTTTGCAATAGGTTACCATTGGAGTTGAGTAGTCAGGGGTCACTGATGCCATTGCACAGCGCTATAGCTGCAGCTAGATTGATTTCGAGTCTGAGCATTGAATCTCAAGGATGGGGGCTGGTTCCTCAGGGTATGTTCTTGCACTTGATTCTTGTGAATGCTAATGATTCTCCTTAATTGTTTTTGCTCGAGGAATGTTGCTAAGGAAGTGTTCCGAATATCCGTTTGTTTGTTCGCACTTCATAGATTTTTTTCTCTCTTAAATAATGTCGGATATTTTTTAGTATCTGTTCATAGTTCGAATCAAGTTCAATGCACATGTCTTGCTGAATTCCAGTACGATTGAATTAATCGTGGATATTTAGCGACGTTGCTGATTGCCTGTACTACTAGAATTTCCGTCACCTTTGAATTGCGATTAGAGTCATATAGGTGAAAATGATAGATAGAAAACATCACTTTGACTGGTGTATGAAGGAAACAAGCGGAATGATGCAATAAATTTCAGTATTTGAATGAAAGTTTAATATAATTGATCATTTATAAGAAGTAGCCTTAGTCGACTGCAGAATTTTAGCATTAATCTACTTTTTTTACAACTTGGCTGATGCAGTTTATGTTTATGTGTTGACTCTTCTTATTTATCACCAAGCTTCAAAATATACTCGAGTTGCGTTCAACTAGTTGATGATAGAGAATTTTTCCGATCTTCAATTTATGTAACCTTAAAAAAGAAAAGAAAAATTGTGTTGCACATCTCAATAGGAGTGTTATCATATCATTTTTATTCTATCTATTATTACCGCTGTCTAAGATGTGAGTGTATACCCATACTAATTTATGCACATCTCAGTGATTTTCAATGGAGTATCACTTGATCCTACAATCCATAGAACTATATCTCTTCAAATTTGTGTGCGCGGGGACGTATAATTCTTGGTTAATTGGGAGGTACTCTTAATCCATGTAAAATTCTCCTGTGTACAAGCACCTCCTTTTCTTCCTCAGATGTTGTCACATCTCATGGTGACAACAAAAATACCCGAAGAAAGTAATCTATTTGACATGTTTTGTTCTTTGTAAAAAAGTAAACATTACTAACTTCCAATTGCAAGAAGTTTGTGGCATCATTGTTTATTACCCCTCCTACACCTGAACCCTCATAATGTGTGCTTGTTTTGGGTGGCTAGGATGACAGTGACTCGTTGTTCATTCTCTGCGGGTTCACTGGGAAGTTTTGGGGATTGTTATTTGTTTTTATGGATTTGGGTAGCTCTTCCAAAACCTGAGTTGTACGTCAGATGCTACTTTCAAAATCCAGAAACCAGGCTAAATCTATCTAGACTGATGCTATATTGCTAATCTTTTTAAGGCTTAAAAAGTGAAAAAAGTAGGAATTTTCACGATAATCAAGATAATCAATTTTTGGCATCTTTCTTGGCTCTTAAACTTTGGTTAGATGTCTAGGACTCTTATCTCCTCCTTTATTCAGAGTTTATTCTGAAGAAATATCTCTTAATTCCCCAAAAGAAACACAAATCGAAACTTTCGTTCTTGAGAACAAGAAGAGTGTGAAAGTAGGGGGTAAAGAAAATCATTTCGGGGGTGTTTCAGGCATTGGTTTAGTATGTCTAGGGGTTTAAGTTAAAGGTTTGGGAAGTCGTTGGGATGCAGCTTTAGAAAGCATAGACTAAGAAAAACTTTGTGGGGTTATTGTTCAAACTCGATCGTTTCTCCAATAAATTCAGTTTTGGAAACTTGTCATCCTAAACATTGGTCAGGCTTGGGAAGCCAAACCGATACCTCAAAGGCCTCTTCACAGGTGTAGGGTTATTATCTTTGTTCTTTGGTCTCATAATAAGTTGTTACAAGTGTCTTCTGGCATTAACTTTTGCTAATTTCATTTATGGGAGAAAGTTATGGATGCAAGTTTATAGATCATCATTTTAAGTACTTTCCTGCACGACGATTCATTTGTTAGAAGATCCGTCTTTGACATTGTTTTGTCTTTCCTGCAGGTATTTCAATGCCTTTATGACGGCTTTACTTTGCAGTAAGTTGTTCTCTGTACTTCTCTGTTTGTTGACTATTAGGGTTTCTTTGTACTCTTAGCTCCCTACAAGAATATAAACCTTAATCATCGACTCTAAATTTCTTTTGTCCTAAATGTGGCTGAGGTTTAAAGTTACATTTCATCTTAGTAGTGATGAAATTCATTAAAGTGATTCAGCAGATACTTATTTGCTGGCATTTTACTCAAATGAAACAAGTTAATGTTGCAAGTGATTGATATACAAACTTTCATGATTGTAGGAGTTATTACCCTTGGAAAGGGCATGTTGGCATGCTGAATTTTATGATTAGATGTGTATGCATGACTTGAATGACATCTTGTTGCAATGCAATGATCTTGAATTCATTCTCCTAGACAAGTTCCTAGCCAAGTTCTATTGAAGTTTTAGGAATTCAGCTACATAGACATGTATTGGTTTTTAGGTTTAGCATGTATCGGTTTTTAGGTTTAGGTCTTTGAAAATTAAGCTTGTAAACACCACTTCCATTGTTTCATTGTTTTGTTTTTGTCACCGACTTTCTAGCCATATTTTCAAAATTTATGCCAAGTTTTTTTTAAAAAAAATTAAGCCCCATTTGACAATAACGATTTTGTTTTTAGTTTTTAGTTTTTGAAATTTATGCTTGTTTCCTTCCAATTTTTCTTACTATAATTCACCTTTTTTTAACAAAAAAGATTTGTATTTTAATGAAATTTCTAAAATAAAAACAACTTTTTAAACTATTTTTAAAATCTTGTGGAAGTAGTATTTATAAGCGTAATTTTTTTTTTTTTTTTTTGGTAAAGAAATTGTGATAAAACAACCACAATTTTCAACATTGGTAAATGAATGAAGTTCAAAATATATCCTCTTACTATGAAAAGGGCCTAAAAAATGAACAAAAAAATGAAATGTTAGATTAGCTTTCAAGTCAATACAACTAGAAAGAATGTACATATCAAATGCTCAAACCCCAAGGTTAAAAAATATATATATGTATGTATATATATATATATATAAAAGAAGAAAAAAAAAAAAAAAAAAAAAAACTTCTATTTCCTTCGCTAGAAGGAAGCCCTACAAAAGAATAGGTTAATAGAATCCTACATGGGTCTGAATTTTTACGTTGGGTGAAACTTCAAAATATCACACTATATCCCTTCTTTTCAGCTTCTCCCTTTTTACCTTTTCTTACCTCTCCTTTTTTACCTCTTTCCTTCAGTTTCTACCTTTTGATTAATGGCGAGCTGTTGGACTTCTTAAAGCACTTAAATTCTCAAGCTTCTCTAAGTAAGACAATTTTTTTGGTGTTACAACATCAGCAGCTTTGCTCATAAGGGTCACGTCTTCTTTACAGCAACTCTCCTTAGTGGACAATGATTCTGTATTAAGTTTATCATTGTCATCGTCCCAACCCATGAAATCTGAGAGTGTCTTTGAAGGTGGGGAGCCATTGGGACTCAGCTGCTTCTCTGTATCCACAGAAACGTTCTCAAACGACTGCTTGGTCAACAATTCTCGAGCAACAGTGTCTGCATAAAGTACATCCTCAATCCTGGACATGATATTAAAAGCCAAGCTTTCTATCACCCTTGAATAGCTTTCTAGGATTGCTTGTCCTACATCCTGTGAACAATCACCAAAGATGAAGATCAATGGATTGCTGATGTTTCAACATTTTAGCAAAAGCAAGGCTAAAGTACGAAAATATCTCCTAACTTTGCCCTTTTTAGAAACGATAATCCTCTTCTATGAACATTTGAAACTATCCTTGAAATAGAAATTAGATAGGATATTGGACAAAGATTAGGACCTGGAACCCGAACTCCGGCACATTGTCCCAGGGTAAAGTTTCTACTTCACAAGTAGTTTTGAAAGAAAGGGCAAAGTTCAAGGGCTTTTTAGCCGAGACAGTTATCGAAGCGTTGATTTTTACCTTGTTATGTTGGATTTTGGATACATCAAGAGCAGATTGAGAAATCCCTGGAAATCTTTGTTTAATTAAGAACAAGATGCTTTCAACTCTCTCTTCAAAAATCTCTCTTTTCTCAAAGCTCACTGCTGAACCCCATGTGGACTTTCCATCCTTTTGATGCATCTTCCTCGTCCATATCACAATTGAGGCCTCAATCCTGTTCTTAAGATCAATCACTTTGTATTCTGTTGACAAGTCCATTGATTTTAGGAATTCCTCTGGATTAAAATAATCATCTGTTATGCTCCTGTAGATTGCATCTCCCAAGCTTGTTTTTCCATTCTACAAAAGACACTCACAATTCAAGGTCAGCTTCAAATTTCATATAACCAATCATCCTAAGCTAAGAAGCACGGATACGGACACGAGACACAGATACGACACGACCCAAACACAGTGAAATGTCATTTCTTGAAAATCTAGGTCACGAACACGACATTTACTATATCATTCCTAAAAACATGATAAATTTATATGCTAACACATGAGTTTGATTTATGCTTGCTAAATTAGTGTCCGATATATGCCTAACAAGTATCTTATACATATTAGATCACAAGTTCTTAGATCACAAGTTTTTTCTCTTACCTTTGGGAGAGACTCAATGTAGCTTTCTGGAACTTCCATTTCTGTCAAGACCTGAGCATTTATGGCCATGGCTGCTTTTAGAATTTGGTTCACAGATTCCTTCTGAAACAGCAGCCATTTTCGAGTAACTTCGGATAGCCCATTCGGAGGCACCTTAACTGCTGGTAGCCACCATTTGTCTCCATCCCTCTGTGTATAATCTGTAATAGATTCATCATCTCTTGATACATACCAAAATTCATCTAGTTTACCAAATTGATCCAGGTAACCCTGCCAATGATATTCAAGTGAGAACTGGA

mRNA sequence

ATGGCGTCCTTAAGGGCAGTCTCTCGGCTATCATCTCGCCTGCAATCTCTCGCTCCAAAGCTCAACAAAAGGTCTCCATCTTCTGAGCTCTCTCCATTCAAATCGGCTTGTCAATCTCAGCCCTCTGCAGCTTCTACATCGCGTGTTTCTTGCACTTCGCGGTTACCATTGGAGTTGAGTAGTCAGGGGTCACTGATGCCATTGCACAGCGCTATAGCTGCAGCTAGATTGATTTCGAGTCTGAGCATTGAATCTCAAGGATGGGGGCTGGTTCCTCAGGGTAACCCTGCCAATGATATTCAAGTGAGAACTGGA

Coding sequence (CDS)

ATGGCGTCCTTAAGGGCAGTCTCTCGGCTATCATCTCGCCTGCAATCTCTCGCTCCAAAGCTCAACAAAAGGTCTCCATCTTCTGAGCTCTCTCCATTCAAATCGGCTTGTCAATCTCAGCCCTCTGCAGCTTCTACATCGCGTGTTTCTTGCACTTCGCGGTTACCATTGGAGTTGAGTAGTCAGGGGTCACTGATGCCATTGCACAGCGCTATAGCTGCAGCTAGATTGATTTCGAGTCTGAGCATTGAATCTCAAGGATGGGGGCTGGTTCCTCAGGGTAACCCTGCCAATGATATTCAAGTGAGAACTGGA

Protein sequence

MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGNPANDIQVRTG
Homology
[Close]
BLAST of Carg10860 vs. NCBI nr
Match: KAG7030432.1 (hypothetical protein SDJN02_08779, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 190.7 bits (483), Expect = 6.6e-45
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0 

Query: 1   MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60
           MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS
Sbjct: 1   MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60

Query: 61  SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGNPANDIQVRTG 106
           SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGNPANDIQVRTG
Sbjct: 61  SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGNPANDIQVRTG 105

[Close]
BLAST of Carg10860 vs. NCBI nr
Match: KAG6599455.1 (hypothetical protein SDJN03_09233, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.9 bits (424), Expect = 4.6e-38
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1   MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60
           MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS
Sbjct: 16  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 75

Query: 61  SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
           SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
Sbjct: 76  SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 109

[Close]
BLAST of Carg10860 vs. NCBI nr
Match: XP_022946234.1 (uncharacterized protein LOC111450380 [Cucurbita moschata] >XP_022946235.1 uncharacterized protein LOC111450380 [Cucurbita moschata] >XP_022946236.1 uncharacterized protein LOC111450380 [Cucurbita moschata])

HSP 1 Score: 167.9 bits (424), Expect = 4.6e-38
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60
          MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS
Sbjct: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
Sbjct: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 94

[Close]
BLAST of Carg10860 vs. NCBI nr
Match: XP_023547330.1 (uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo] >XP_023547331.1 uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo] >XP_023547332.1 uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.8 bits (421), Expect = 1.0e-37
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60
          MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKS+CQSQPSAASTSRVSCTSRLPLELS
Sbjct: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSSCQSQPSAASTSRVSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
Sbjct: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 94

[Close]
BLAST of Carg10860 vs. NCBI nr
Match: XP_022999549.1 (uncharacterized protein LOC111493876 [Cucurbita maxima] >XP_022999550.1 uncharacterized protein LOC111493876 [Cucurbita maxima] >XP_022999551.1 uncharacterized protein LOC111493876 [Cucurbita maxima])

HSP 1 Score: 164.5 bits (415), Expect = 5.1e-37
Identity = 92/94 (97.87%), Postives = 93/94 (98.94%), Query Frame = 0 

Query: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60
          MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKS+CQSQPSAAS SRVSCTSRLPLELS
Sbjct: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSSCQSQPSAASISRVSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
Sbjct: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 94

[Close]
BLAST of Carg10860 vs. ExPASy TrEMBL
Match: A0A6J1G399 (uncharacterized protein LOC111450380 OS=Cucurbita moschata OX=3662 GN=LOC111450380 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.2e-38
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60
          MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS
Sbjct: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
Sbjct: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 94

[Close]
BLAST of Carg10860 vs. ExPASy TrEMBL
Match: A0A6J1KDE2 (uncharacterized protein LOC111493876 OS=Cucurbita maxima OX=3661 GN=LOC111493876 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.4e-37
Identity = 92/94 (97.87%), Postives = 93/94 (98.94%), Query Frame = 0 

Query: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60
          MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKS+CQSQPSAAS SRVSCTSRLPLELS
Sbjct: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSSCQSQPSAASISRVSCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
Sbjct: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 94

[Close]
BLAST of Carg10860 vs. ExPASy TrEMBL
Match: A0A0A0LKT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004120 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.2e-33
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 0 

Query: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60
          MASL+AVSRLSSRLQSLAPK NKRS SSEL  FKS CQSQPSAASTSR+ CTSRLP+ELS
Sbjct: 1  MASLKAVSRLSSRLQSLAPKFNKRSSSSELFSFKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          SQGSLMPLHSAIAAARLISSL+IESQGWGLVPQG
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG 94

[Close]
BLAST of Carg10860 vs. ExPASy TrEMBL
Match: A0A6J1DYI4 (uncharacterized protein LOC111024217 OS=Momordica charantia OX=3673 GN=LOC111024217 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.8e-32
Identity = 82/94 (87.23%), Postives = 89/94 (94.68%), Query Frame = 0 

Query: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60
          MASL+AVSRLSSRL SLAPKL K+ PSSE SP KS+CQS+PSAASTSR+SCTSRLPLELS
Sbjct: 1  MASLKAVSRLSSRLHSLAPKLKKKFPSSEPSPLKSSCQSKPSAASTSRISCTSRLPLELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          SQGSLMPLHSAIAAARLISSL+IES+GWGLVPQG
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESRGWGLVPQG 94

[Close]
BLAST of Carg10860 vs. ExPASy TrEMBL
Match: A0A5A7V7B3 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00330 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.2e-31
Identity = 82/94 (87.23%), Postives = 87/94 (92.55%), Query Frame = 0 

Query: 1  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 60
          MASL+AVSRLSSRLQSL+PK NKRS SSEL   KS CQSQPSAASTSR+ CTSRLP+ELS
Sbjct: 1  MASLKAVSRLSSRLQSLSPKFNKRSSSSELFSSKSTCQSQPSAASTSRLHCTSRLPVELS 60

Query: 61 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          SQGSLMPLHSAIAAARLISSL+IESQGWGLVPQG
Sbjct: 61 SQGSLMPLHSAIAAARLISSLTIESQGWGLVPQG 94

[Close]
BLAST of Carg10860 vs. TAIR 10
Match: AT1G55205.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.5 bits (197), Expect = 8.9e-16
Identity = 56/96 (58.33%), Postives = 71/96 (73.96%), Query Frame = 0 

Query: 1  MASLRAVSRLSSRLQSLAPKLNKRSP--SSELSPFKSACQSQPSAASTSRVSCTSRLPLE 60
          MAS   + RLSS++ SL  KL+K +   SS  SP KS   S PS+A TSR++ + RLP+E
Sbjct: 1  MASSSKICRLSSKIHSLTQKLSKTNVHISSLPSPIKS---SSPSSA-TSRINQSFRLPVE 60

Query: 61 LSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          LS   S++PLHSAIA+ARLISSLS+ES+ WGLVPQG
Sbjct: 61 LSCCLSMLPLHSAIASARLISSLSVESKSWGLVPQG 92

[Close]
BLAST of Carg10860 vs. TAIR 10
Match: AT1G55205.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 80.5 bits (197), Expect = 8.9e-16
Identity = 56/96 (58.33%), Postives = 71/96 (73.96%), Query Frame = 0 

Query: 1  MASLRAVSRLSSRLQSLAPKLNKRSP--SSELSPFKSACQSQPSAASTSRVSCTSRLPLE 60
          MAS   + RLSS++ SL  KL+K +   SS  SP KS   S PS+A TSR++ + RLP+E
Sbjct: 1  MASSSKICRLSSKIHSLTQKLSKTNVHISSLPSPIKS---SSPSSA-TSRINQSFRLPVE 60

Query: 61 LSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          LS   S++PLHSAIA+ARLISSLS+ES+ WGLVPQG
Sbjct: 61 LSCCLSMLPLHSAIASARLISSLSVESKSWGLVPQG 92

[Close]
BLAST of Carg10860 vs. TAIR 10
Match: AT3G13674.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55205.1); Has 76 Blast hits to 76 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 78.6 bits (192), Expect = 3.4e-15
Identity = 53/96 (55.21%), Postives = 72/96 (75.00%), Query Frame = 0 

Query: 1  MASLRAVSRLSSRLQSLAPKLNKRSP--SSELSPFKSACQSQPSAASTSRVSCTSRLPLE 60
          MAS R + R SSRL+SL   L+ ++   SS  SP KSA    PS+A++ R++ +SRLP+E
Sbjct: 1  MASSRVLGRFSSRLKSLCQNLSNKNANVSSLPSPIKSA---SPSSATSCRLNRSSRLPVE 60

Query: 61 LSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          LS   S++PLHSAIA++RL+SSLS+ES+ WGLVPQG
Sbjct: 61 LS---SMIPLHSAIASSRLVSSLSVESKIWGLVPQG 90

[Close]
BLAST of Carg10860 vs. TAIR 10
Match: AT4G39300.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 5.4e-05
Identity = 37/94 (39.36%), Postives = 54/94 (57.45%), Query Frame = 0 

Query: 2  ASLRAVSR-LSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 61
          ++L A SR L SR +++  K     P++  SPF S  QS P A         SR+   L 
Sbjct: 7  SALMAGSRNLVSRSRTVTQKSLNLKPTTTSSPFASMSQSIPRA---------SRVLSALG 66

Query: 62 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG 95
          S  +++PLHSA+A+ARL SS++ +S  W L+ QG
Sbjct: 67 SVETMIPLHSAVASARLRSSIAADSSCWSLLSQG 91

[Close]
BLAST of Carg10860 vs. TAIR 10
Match: AT4G39300.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11630.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 2.7e-04
Identity = 36/93 (38.71%), Postives = 53/93 (56.99%), Query Frame = 0 

Query: 2  ASLRAVSR-LSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELS 61
          ++L A SR L SR +++  K     P++  SPF S  QS P A         SR+   L 
Sbjct: 7  SALMAGSRNLVSRSRTVTQKSLNLKPTTTSSPFASMSQSIPRA---------SRVLSALG 66

Query: 62 SQGSLMPLHSAIAAARLISSLSIESQGWGLVPQ 94
          S  +++PLHSA+A+ARL SS++ +S  W L+ Q
Sbjct: 67 SVETMIPLHSAVASARLRSSIAADSSCWSLLSQ 90

The following BLAST results are available for this feature:
BLAST of Carg10860 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7030432.16.6e-45100.00hypothetical protein SDJN02_08779, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6599455.14.6e-38100.00hypothetical protein SDJN03_09233, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022946234.14.6e-38100.00uncharacterized protein LOC111450380 [Cucurbita moschata] >XP_022946235.1 unchar... [more]
XP_023547330.11.0e-3798.94uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo] >XP_023547331.... [more]
XP_022999549.15.1e-3797.87uncharacterized protein LOC111493876 [Cucurbita maxima] >XP_022999550.1 uncharac... [more]
BLAST of Carg10860 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G3992.2e-38100.00uncharacterized protein LOC111450380 OS=Cucurbita moschata OX=3662 GN=LOC1114503... [more]
A0A6J1KDE22.4e-3797.87uncharacterized protein LOC111493876 OS=Cucurbita maxima OX=3661 GN=LOC111493876... [more]
A0A0A0LKT56.2e-3389.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004120 PE=4 SV=1[more]
A0A6J1DYI41.8e-3287.23uncharacterized protein LOC111024217 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A5A7V7B31.2e-3187.23Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
BLAST of Carg10860 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G55205.18.9e-1658.33unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G55205.28.9e-1658.33unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G13674.13.4e-1555.21unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G39300.15.4e-0539.36unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G39300.22.7e-0438.71unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..49
NoneNo IPR availablePANTHERPTHR33156:SF43BNAANNG28360D PROTEINcoord: 1..96
IPR043459NFD6/NOXY2-likePANTHERPTHR33156OS02G0230000 PROTEINcoord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10860-RACarg10860-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090501 RNA phosphodiester bond hydrolysis
molecular_function GO:0016787 hydrolase activity