Carg10791 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10791
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Photosystem II PsbX
Location	Carg_Chr05: 12064661 .. 12065029 (-)
RNA-Seq Expression	Carg10791
Synteny	Carg10791

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAACTTCCGCAGTTTCAATGGCTATGCCAATTACTAATGCGACCCAGAAGAGAGCAAGGAACACCGACGCCTTCGCTAAGGCATTGCCTTTGAGGCCTTCCAACAAGCCAACCGCTTCATCAAACTCCAGAGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCAGTTGCTGGACTCACTGCTACTGCACTGACGGCCTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCTGGGCCTGGAGTTAGTCCCTCTCTAAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCGCCGCTATCTTGGGTGCGATTATCGGCGTTTCCAATTTCGATCCGGTCAAGCGTACCTGA

mRNA sequence

ATGGCTTCAACTTCCGCAGTTTCAATGGCTATGCCAATTACTAATGCGACCCAGAAGAGAGCAAGGAACACCGACGCCTTCGCTAAGGCATTGCCTTTGAGGCCTTCCAACAAGCCAACCGCTTCATCAAACTCCAGAGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCAGTTGCTGGACTCACTGCTACTGCACTGACGGCCTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCTGGGCCTGGAGTTAGTCCCTCTCTAAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCGCCGCTATCTTGGGTGCGATTATCGGCGTTTCCAATTTCGATCCGGTCAAGCGTACCTGA

Coding sequence (CDS)

ATGGCTTCAACTTCCGCAGTTTCAATGGCTATGCCAATTACTAATGCGACCCAGAAGAGAGCAAGGAACACCGACGCCTTCGCTAAGGCATTGCCTTTGAGGCCTTCCAACAAGCCAACCGCTTCATCAAACTCCAGAGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCAGTTGCTGGACTCACTGCTACTGCACTGACGGCCTCCATGGTGCTTCCTGAGGTGGCTGAAGCTGCTGGGCCTGGAGTTAGTCCCTCTCTAAAGAATTTCTTGCTCAGCATTGCCGCCGGTGGAGTAGTCGTCGCCGCTATCTTGGGTGCGATTATCGGCGTTTCCAATTTCGATCCGGTCAAGCGTACCTGA

Protein sequence

MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAVAGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVKRT

Homology

[Close]

BLAST of Carg10791 vs. NCBI nr
Match: KAG7030501.1 (hypothetical protein SDJN02_08848, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 215.3 bits (547), Expect = 2.9e-52
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV
Sbjct: 1   MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60

Query: 61  AGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK
Sbjct: 61  AGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120

Query: 121 RT 123
           RT
Sbjct: 121 RT 122

[Close]

BLAST of Carg10791 vs. NCBI nr
Match: XP_022999231.1 (uncharacterized protein LOC111493667 [Cucurbita maxima] >XP_023522826.1 uncharacterized protein LOC111786846 [Cucurbita pepo subsp. pepo] >XP_023546323.1 uncharacterized protein LOC111805446 [Cucurbita pepo subsp. pepo] >XP_023546324.1 uncharacterized protein LOC111805448 [Cucurbita pepo subsp. pepo] >KAG6599523.1 hypothetical protein SDJN03_09301, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211.5 bits (537), Expect = 4.2e-51
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSAVSMAMPITNATQKRAR+TDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60

Query: 61  AGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGL ATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120

Query: 121 RT 123
           RT
Sbjct: 121 RT 122

[Close]

BLAST of Carg10791 vs. NCBI nr
Match: XP_022946746.1 (uncharacterized protein LOC111450721 [Cucurbita moschata])

HSP 1 Score: 209.9 bits (533), Expect = 1.2e-50
Identity = 119/122 (97.54%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSAVSMAMPITNATQKRAR+TDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60

Query: 61  AGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGL ATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVV AILGAIIGVSNFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPVK 120

Query: 121 RT 123
           RT
Sbjct: 121 RT 122

[Close]

BLAST of Carg10791 vs. NCBI nr
Match: XP_038890010.1 (uncharacterized protein LOC120079733 [Benincasa hispida])

HSP 1 Score: 194.9 bits (494), Expect = 4.1e-46
Identity = 110/122 (90.16%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSA+SMAMPITNA QKRAR  +AFAK LPLRPSNKP ASSNS AKFQVRASLKEKAV
Sbjct: 1   MASTSAISMAMPITNAAQKRARLAEAFAKPLPLRPSNKPNASSNSSAKFQVRASLKEKAV 60

Query: 61  AGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGL ATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVV AILGA+IGV+NFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 123
           RT
Sbjct: 121 RT 122

[Close]

BLAST of Carg10791 vs. NCBI nr
Match: KAA0061475.1 (membrane family protein [Cucumis melo var. makuwa] >TYK10799.1 membrane family protein [Cucumis melo var. makuwa])

HSP 1 Score: 193.0 bits (489), Expect = 1.5e-45
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSA+SMAMPITNA QKRAR  +AFAK LPLRPSNKP+ SS+S AKFQVRASLKEKAV
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60

Query: 61  AGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGL ATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVV AILGA+IGV+NFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 123
           RT
Sbjct: 121 RT 122

[Close]

BLAST of Carg10791 vs. ExPASy TrEMBL
Match: A0A6J1KCH8 (uncharacterized protein LOC111493667 OS=Cucurbita maxima OX=3661 GN=LOC111493667 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.0e-51
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSAVSMAMPITNATQKRAR+TDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60

Query: 61  AGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGL ATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120

Query: 121 RT 123
           RT
Sbjct: 121 RT 122

[Close]

BLAST of Carg10791 vs. ExPASy TrEMBL
Match: A0A6J1G4H3 (uncharacterized protein LOC111450721 OS=Cucurbita moschata OX=3662 GN=LOC111450721 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.9e-51
Identity = 119/122 (97.54%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSAVSMAMPITNATQKRAR+TDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV
Sbjct: 1   MASTSAVSMAMPITNATQKRARSTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60

Query: 61  AGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGL ATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVV AILGAIIGVSNFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAIIGVSNFDPVK 120

Query: 121 RT 123
           RT
Sbjct: 121 RT 122

[Close]

BLAST of Carg10791 vs. ExPASy TrEMBL
Match: A0A5A7V6L0 (Membrane family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001140 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 7.5e-46
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSA+SMAMPITNA QKRAR  +AFAK LPLRPSNKP+ SS+S AKFQVRASLKEKAV
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60

Query: 61  AGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGL ATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVV AILGA+IGV+NFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 123
           RT
Sbjct: 121 RT 122

[Close]

BLAST of Carg10791 vs. ExPASy TrEMBL
Match: A0A0A0LIL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000260 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.3e-45
Identity = 107/122 (87.70%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSA+SMAMPITNA QKRAR  +AFAK LPLRPSNKP+ SS+S AKFQVRASLKEKAV
Sbjct: 1   MASTSAISMAMPITNAAQKRARRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60

Query: 61  AGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGL ATALTASMVLPEVAEAAG GVSPSLKNFLLSIAAGGVVV AILGA+IGV+NFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGSGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 123
           RT
Sbjct: 121 RT 122

[Close]

BLAST of Carg10791 vs. ExPASy TrEMBL
Match: A0A1S3CAS0 (uncharacterized protein LOC103498700 OS=Cucumis melo OX=3656 GN=LOC103498700 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 8.3e-45
Identity = 106/122 (86.89%), Postives = 112/122 (91.80%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSA+SM MPITNA QKR R  +AFAK LPLRPSNKP+ SS+S AKFQVRASLKEKAV
Sbjct: 1   MASTSAISMPMPITNAAQKRTRRAEAFAKPLPLRPSNKPSGSSSSSAKFQVRASLKEKAV 60

Query: 61  AGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
           AGL ATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVV AILGA+IGV+NFDPVK
Sbjct: 61  AGLAATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVTAILGAVIGVANFDPVK 120

Query: 121 RT 123
           RT
Sbjct: 121 RT 122

[Close]

BLAST of Carg10791 vs. TAIR 10
Match: AT2G06520.1 (photosystem II subunit X )

HSP 1 Score: 117.1 bits (292), Expect = 1.0e-26
Identity = 66/122 (54.10%), Postives = 87/122 (71.31%), Query Frame = 0


Query: 1   MASTSAVSMAMPITNATQKRARNTDAFAKALPLRPSNKPTASSNSRAKFQVRASLKEKAV 60
           MASTSA+S+  P+          +  F K LPL+PS    A+     + QV+A   +KA+
Sbjct: 1   MASTSAMSLVTPLNQT------RSSPFLKPLPLKPSKALVATGGRAQRLQVKALKMDKAL 60

Query: 61  AGLTATALTASMVLPEVAEAAGPGVSPSLKNFLLSIAAGGVVVAAILGAIIGVSNFDPVK 120
            G++A ALTASMV+PE+AEAAG G+SPSLKNFLLSIA+GG+V+  I+G ++GVSNFDPVK
Sbjct: 61  TGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPVK 116

Query: 121 RT 123
           RT
Sbjct: 121 RT 116

The following BLAST results are available for this feature:

BLAST of Carg10791 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030501.1	2.9e-52	100.00	hypothetical protein SDJN02_08848, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022999231.1	4.2e-51	98.36	uncharacterized protein LOC111493667 [Cucurbita maxima] >XP_023522826.1 uncharac...	[more]
XP_022946746.1	1.2e-50	97.54	uncharacterized protein LOC111450721 [Cucurbita moschata]	[more]
XP_038890010.1	4.1e-46	90.16	uncharacterized protein LOC120079733 [Benincasa hispida]	[more]
KAA0061475.1	1.5e-45	88.52	membrane family protein [Cucumis melo var. makuwa] >TYK10799.1 membrane family p...	[more]

BLAST of Carg10791 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg10791 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KCH8	2.0e-51	98.36	uncharacterized protein LOC111493667 OS=Cucurbita maxima OX=3661 GN=LOC111493667...	[more]
A0A6J1G4H3	5.9e-51	97.54	uncharacterized protein LOC111450721 OS=Cucurbita moschata OX=3662 GN=LOC1114507...	[more]
A0A5A7V6L0	7.5e-46	88.52	Membrane family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LIL7	6.3e-45	87.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000260 PE=4 SV=1	[more]
A0A1S3CAS0	8.3e-45	86.89	uncharacterized protein LOC103498700 OS=Cucumis melo OX=3656 GN=LOC103498700 PE=...	[more]

BLAST of Carg10791 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06520.1	1.0e-26	54.10	photosystem II subunit X	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009518	Photosystem II PsbX	PFAM	PF06596	PsbX	coord: 85..122 e-value: 3.5E-17 score: 62.1
None	No IPR available	GENE3D	1.20.5.510	Single helix bin	coord: 84..122 e-value: 1.2E-11 score: 46.1
None	No IPR available	PANTHER	PTHR34455	OS07G0673550 PROTEIN	coord: 1..122
None	No IPR available	PANTHER	PTHR34455:SF2	EXPRESSED PROTEIN	coord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10791-RA	Carg10791-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0019904	protein domain specific binding