Carg10738 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10738
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr01: 11689822 .. 11690697 (-)
RNA-Seq ExpressionCarg10738
SyntenyCarg10738
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCCTTTCTCTTGCATTCAATCGCTTTCTCTGCTCTCTTGCGCGCGCAGCGGCTGGCTCTGGTTTTTCTATTGCCACCAATAGCTTTTGATAAATATTGGTAAAGATTCCTCAGATCTACAGTTGAAGGTATTCGCTGTTCTTGAGTTTTCATTTCCAGTGATTCGAAGGAAGGATTTGCTGCGAATACGAGGTTAGCTTATTGTACTGTAATACGGTCTGAGTGTGAAGTTTGATCCGTTTAGTCGTGCGTTCTGCAGTTTTATCCTCTTTGTTCGTAAATGTGGCTTTCATCTACGTTTTGACTTGCATTTTGCGAATTATTTTGGTTTCATTGTTCTAAATCTGATCTTGAATCGGAATTCGAGTTTGGAGTCATCTTTTCGCCTCTCTTCTCGGTCGTTTCACTCTCGGAGATTTTGTTATGAATTTTGAGGAGCTCCTTATCTAGCTTCGAATTTCCTTTCCAACTTGCAGTTGCAGTTCTGAGCATAATCAGCTTTTGCTGTGTATGAAATTTATCGAGGCTTACATTTTTTATTTTTGGCGGTAGATGTGCATCTTCCGCTTAGGAACTGAAAAATCTTCTCAATTCAGTTGGTTACGCTTGCACTTATGTCTGTTTCTGATTAAATTTGTTTTTGGAAAAATAGTTATACACGGTGTTTCAATCTGAAACGATATGCGTATGAATACTTCGATTGATGTTAAGTTTTTGGTCAATAGATGCGGAACCATACAATGAATCAATTTATTCAACTTTTCTGGTTATGCAGGACACGCTCGGCAACTTCGACCGTCTACGACTGTCTGAAGACTTTCTCCTATTCGTCTGTTAACACCTTCTTGTGCGCGTTGGATGGAACATGGTAG

mRNA sequence

ATGCTTCCTTTCTCTTGCATTCAATCGCTTTCTCTGCTCTCTTGCGCGCGCAGCGGCTGGCTCTGTGATTCGAAGGAAGGATTTGCTGCGAATACGAGGACACGCTCGGCAACTTCGACCGTCTACGACTGTCTGAAGACTTTCTCCTATTCGTCTGTTAACACCTTCTTGTGCGCGTTGGATGGAACATGGTAG

Coding sequence (CDS)

ATGCTTCCTTTCTCTTGCATTCAATCGCTTTCTCTGCTCTCTTGCGCGCGCAGCGGCTGGCTCTGTGATTCGAAGGAAGGATTTGCTGCGAATACGAGGACACGCTCGGCAACTTCGACCGTCTACGACTGTCTGAAGACTTTCTCCTATTCGTCTGTTAACACCTTCTTGTGCGCGTTGGATGGAACATGGTAG

Protein sequence

MLPFSCIQSLSLLSCARSGWLCDSKEGFAANTRTRSATSTVYDCLKTFSYSSVNTFLCALDGTW
Homology
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BLAST of Carg10738 vs. NCBI nr
Match: KAG7037669.1 (hypothetical protein SDJN02_01299, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 133.7 bits (335), Expect = 5.8e-28
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 

Query: 1  MLPFSCIQSLSLLSCARSGWLCDSKEGFAANTRTRSATSTVYDCLKTFSYSSVNTFLCAL 60
          MLPFSCIQSLSLLSCARSGWLCDSKEGFAANTRTRSATSTVYDCLKTFSYSSVNTFLCAL
Sbjct: 1  MLPFSCIQSLSLLSCARSGWLCDSKEGFAANTRTRSATSTVYDCLKTFSYSSVNTFLCAL 60

Query: 61 DGTW 65
          DGTW
Sbjct: 61 DGTW 64

The following BLAST results are available for this feature:
BLAST of Carg10738 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037669.15.8e-28100.00hypothetical protein SDJN02_01299, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg10738 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10738 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10738 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10738-RACarg10738-RAmRNA