Carg10730 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10730
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionsterile alpha motif (SAM) domain-containing protein
LocationCarg_Chr01: 11738057 .. 11738775 (-)
RNA-Seq ExpressionCarg10730
SyntenyCarg10730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGCCGCCGATGACGACGACGACGATCTTCTTCCTTCCACCCATACAGTCTTCTTCTCGCGGTCTTAGACCTCGCAATCTCCGACTTATCGCTCCACACTTGCGCATTCAAGAGGCCGAAGCGTTCGGCTCCAATCGCCACTGGCAAGGACTCAATCCTTTGAGTACATGGAGAATGGCCAATACTTCTGCAAATGTAAGTTGTTGATGTAACTGCTCAATTAAATTCCCATTTTAAGTTCATATTGACTCAAATTTTGTTAGATGTATCCATCTACCGCTGTAATGTTCTTTGTACTTCTGCCGATGTTTTCAAATGTCACATGCGCGTACAATTATATCGCTGTCTTTTCATTTCTTATGATTTCTGAACATCATTTAGTTATCTTTCATCGATTACTTGTTGCAGTATAATTTCACGAATCAGAAGGACGTTACAATTTTGTTTGTTGATGCCATTGAGGTTGAAGCTTTCAACTCAAAAACTCTGTTCCTGATTGGATGCTATACCATCGGTAAAATTTGGATCTCGCTTTTGTCATCTTGATTTGTTGACCAGACTCCTAATGGATGGCCTCGTATATTTTCAAGTGCAGTTGATATTGAAATGAACATAATAAAGCTTTCGAGGGTTGAGCTGAATCAAATCTGCAGATTCAAGTAAGTTAAAAACTAAGCTACTACTGGCTCTCTTTTAGATAATCATTTTATATAATC

mRNA sequence

ATGCCGCCGCCGATGACGACGACGACGATCTTCTTCCTTCCACCCATACAGTCTTCTTCTCGCGGTCTTAGACCTCGCAATCTCCGACTTATCGCTCCACACTTGCGCATTCAAGAGGCCGAAGCGTTCGGCTCCAATCGCCACTGGCAAGGACTCAATCCTTTGAGTACATGGAGAATGGCCAATACTTCTGCAAATTATAATTTCACGAATCAGAAGGACGTTACAATTTTGTTTGTTGATGCCATTGAGGTTGAAGCTTTCAACTCAAAAACTCTGTTCCTGATTGGATGCTATACCATCGTTGATATTGAAATGAACATAATAAAGCTTTCGAGGGTTGAGCTGAATCAAATCTGCAGATTCAAGTAAGTTAAAAACTAAGCTACTACTGGCTCTCTTTTAGATAATCATTTTATATAATC

Coding sequence (CDS)

ATGCCGCCGCCGATGACGACGACGACGATCTTCTTCCTTCCACCCATACAGTCTTCTTCTCGCGGTCTTAGACCTCGCAATCTCCGACTTATCGCTCCACACTTGCGCATTCAAGAGGCCGAAGCGTTCGGCTCCAATCGCCACTGGCAAGGACTCAATCCTTTGAGTACATGGAGAATGGCCAATACTTCTGCAAATTATAATTTCACGAATCAGAAGGACGTTACAATTTTGTTTGTTGATGCCATTGAGGTTGAAGCTTTCAACTCAAAAACTCTGTTCCTGATTGGATGCTATACCATCGTTGATATTGAAATGAACATAATAAAGCTTTCGAGGGTTGAGCTGAATCAAATCTGCAGATTCAAGTAA

Protein sequence

MPPPMTTTTIFFLPPIQSSSRGLRPRNLRLIAPHLRIQEAEAFGSNRHWQGLNPLSTWRMANTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIVDIEMNIIKLSRVELNQICRFK
Homology
BLAST of Carg10730 vs. NCBI nr
Match: KAG7037677.1 (hypothetical protein SDJN02_01307, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 249.2 bits (635), Expect = 1.8e-62
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0

Query: 1   MPPPMTTTTIFFLPPIQSSSRGLRPRNLRLIAPHLRIQEAEAFGSNRHWQGLNPLSTWRM 60
           MPPPMTTTTIFFLPPIQSSSRGLRPRNLRLIAPHLRIQEAEAFGSNRHWQGLNPLSTWRM
Sbjct: 1   MPPPMTTTTIFFLPPIQSSSRGLRPRNLRLIAPHLRIQEAEAFGSNRHWQGLNPLSTWRM 60

Query: 61  ANTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIVDIEMNIIKLSRVELNQIC 120
           ANTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIVDIEMNIIKLSRVELNQIC
Sbjct: 61  ANTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIVDIEMNIIKLSRVELNQIC 120

Query: 121 RFK 124
           RFK
Sbjct: 121 RFK 123

BLAST of Carg10730 vs. NCBI nr
Match: XP_023524427.1 (uncharacterized protein LOC111788332 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 220.3 bits (560), Expect = 9.1e-54
Identity = 113/123 (91.87%), Postives = 113/123 (91.87%), Query Frame = 0

Query: 1   MPPPMTTTTIFFLPPIQSSSRGLRPRNLRLIAPHLRIQEAEAFGSNRHWQGLNPLSTWRM 60
           MPPPMTTTTIFFLP IQSSSR LR RNL   APH R QEAEAFG NRHWQGLNPLS WRM
Sbjct: 1   MPPPMTTTTIFFLPTIQSSSRCLRSRNL---APHSRTQEAEAFGFNRHWQGLNPLSKWRM 60

Query: 61  ANTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIVDIEMNIIKLSRVELNQIC 120
           ANTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIVDIEMNIIKLSRVELNQIC
Sbjct: 61  ANTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIVDIEMNIIKLSRVELNQIC 120

Query: 121 RFK 124
           RFK
Sbjct: 121 RFK 120

BLAST of Carg10730 vs. NCBI nr
Match: XP_022940002.1 (uncharacterized protein LOC111445765 [Cucurbita moschata])

HSP 1 Score: 203.4 bits (516), Expect = 1.2e-48
Identity = 102/111 (91.89%), Postives = 103/111 (92.79%), Query Frame = 0

Query: 1   MPPPMTTTTIFFLPPIQSSSRGLRPRNLRLIAPHLRIQEAEAFGSNRHWQGLNPLSTWRM 60
           MPPPMTTTTIFFLPPIQSSSRGLRPRNLRLIAP  R QEAEAFG NRHWQGLNP S WRM
Sbjct: 1   MPPPMTTTTIFFLPPIQSSSRGLRPRNLRLIAPQSRTQEAEAFGFNRHWQGLNPSSKWRM 60

Query: 61  ANTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIVDIEMNIIKL 112
           ANTSANYN TNQKDVTILFVDAI VEAFNSKTLFLIGCYTIVDIE+NIIKL
Sbjct: 61  ANTSANYNCTNQKDVTILFVDAIVVEAFNSKTLFLIGCYTIVDIEINIIKL 111

BLAST of Carg10730 vs. NCBI nr
Match: KAG6608328.1 (hypothetical protein SDJN03_01670, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.9 bits (494), Expect = 4.1e-46
Identity = 97/108 (89.81%), Postives = 101/108 (93.52%), Query Frame = 0

Query: 2   PPPMTTTTIFFLPPIQSSSRGLRPRNLRLIAPHLRIQEAEAFGSNRHWQGLNPLSTWRMA 61
           PP  TTTTIFFLPPIQSSSRGLRPRNLRLIAPHLRIQEAEAFGSNRHWQGLN LS WRMA
Sbjct: 80  PPTTTTTTIFFLPPIQSSSRGLRPRNLRLIAPHLRIQEAEAFGSNRHWQGLNHLSKWRMA 139

Query: 62  NTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIVDIEMNII 110
           NTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTI  I ++++
Sbjct: 140 NTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIGKIWISLL 187

BLAST of Carg10730 vs. ExPASy TrEMBL
Match: A0A6J1FIF4 (uncharacterized protein LOC111445765 OS=Cucurbita moschata OX=3662 GN=LOC111445765 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.6e-49
Identity = 102/111 (91.89%), Postives = 103/111 (92.79%), Query Frame = 0

Query: 1   MPPPMTTTTIFFLPPIQSSSRGLRPRNLRLIAPHLRIQEAEAFGSNRHWQGLNPLSTWRM 60
           MPPPMTTTTIFFLPPIQSSSRGLRPRNLRLIAP  R QEAEAFG NRHWQGLNP S WRM
Sbjct: 1   MPPPMTTTTIFFLPPIQSSSRGLRPRNLRLIAPQSRTQEAEAFGFNRHWQGLNPSSKWRM 60

Query: 61  ANTSANYNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTIVDIEMNIIKL 112
           ANTSANYN TNQKDVTILFVDAI VEAFNSKTLFLIGCYTIVDIE+NIIKL
Sbjct: 61  ANTSANYNCTNQKDVTILFVDAIVVEAFNSKTLFLIGCYTIVDIEINIIKL 111

BLAST of Carg10730 vs. TAIR 10
Match: AT2G45700.1 (sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 42.4 bits (98), Expect = 3.2e-04
Identity = 21/35 (60.00%), Postives = 25/35 (71.43%), Query Frame = 0

Query: 67  YNFTNQKDVTILFVDAIEVEAFNSKTLFLIGCYTI 102
           Y+F  Q+ V    V+AI+ EAFN KTLFLIG YTI
Sbjct: 536 YDFPKQEAVIQFVVEAIQAEAFNPKTLFLIGSYTI 570

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7037677.11.8e-62100.00hypothetical protein SDJN02_01307, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023524427.19.1e-5491.87uncharacterized protein LOC111788332 [Cucurbita pepo subsp. pepo][more]
XP_022940002.11.2e-4891.89uncharacterized protein LOC111445765 [Cucurbita moschata][more]
KAG6608328.14.1e-4689.81hypothetical protein SDJN03_01670, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FIF45.6e-4991.89uncharacterized protein LOC111445765 OS=Cucurbita moschata OX=3662 GN=LOC1114457... [more]
Match NameE-valueIdentityDescription
AT2G45700.13.2e-0460.00sterile alpha motif (SAM) domain-containing protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10730-RACarg10730-RAmRNA