Carg10716 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10716
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic
Location	Carg_Chr01: 11818221 .. 11819537 (-)
RNA-Seq Expression	Carg10716
Synteny	Carg10716

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTATCTCTCAGGCGAAGCAACAACACCAAACCGTCACCGGAAGAGCGATAAGAACCTGTTTCGTCATGGCGGCGACAGCAGCAGTACCGTCCACTACTTCCACCACCGCCGTCCACATTCGCCGAAGCGACTTCCTCTCTCCGACCTCAAAAACCACCGCTATATTCTTCAACTACATCACTTCACTCCCAAAGCCGCTCAAATTCAGCGTCAGAAACTCCAACGACTCATCGGCGGAGACTGTCACAACGGACACGGCGAGTGAGCCGGAACCTGAAAGCTCACTCAAGGCCTCCGATGGATCGTCGTCTCTGATTTCGGCTCTCAACGTCGAACGAGCCCTCCGTGGAATTCGTAATGTTTCAACCCGAGTCTCTCTGTCCATTCCAGATTTCTCAACTTCGCTTAAATTCCTATGAAAATTTGTTCTGGTAATGCAGCAATTACAGACGTGAATCACTACGGAAGACTCGGACTCCGAAGAGGATGTCCATATGATCAGGTAATTTGATTTAATTCAATCAAATCGCTAAAAGAAACCCTAACTCTTCGATAATCATACCAACCACGGTTGGCCCTAATTCGCTCCAGGTTCCGATTGCGTACAACATCAAAGTTGAAGAACTAAAGAGCCAGGGATTAGAGGAAGAAGAACTCAACCAAAAACTCGAACTCCTAAAAGTCGGTAGAAAACAACAACAACAATGCCCTAAATTAAATTCCGAGATTGGATTATAACTGTAAGTAATTTTGAGGTATGATTTACAGGAATCTTACACGATATTGTCATCTGTTGAAGAGAGAAGAATGTACGATTGGAGCTTGTCCAGAATCGGAGAACCAGAAAAATATACGTGGCCGTTCGAGGCCGATATAACTCAGATTCAAACTCAATTGCCGCCGCCGAAGGTAATCTCCATTTCCATTTCCCCTCAAATCTCACCGCAATAAACTTCTAAAACAATCTCTGTTTTGATCGGCGATGAATGTAGGAACCGGAAGACGAAGGACCGACGAGATTGGTGGGTTACTTCTTCTTAGGGTGGTTCGTTCTGTCCATCGTGTTATCTATTGCTCTGAATTTGTAGATTCGCCATTAACGGTATCTGTATAAACACAAGAACGGAAACCCCGCCAGTGATTTGAACCGAAGGAACTCGGATCATGGGCCCATTATAATATTGGGCCTTCTTAACTGTAAGTTGAGCCCAAATTTATAGCCCATAAAGTTGTGTCTATTCGTAGGCCCGTTGGAAAAAATTACTTTATATGAATAGTTTCAAATTTCATTTAGAATATAATATATACTCTAACC

mRNA sequence

TCTTATCTCTCAGGCGAAGCAACAACACCAAACCGTCACCGGAAGAGCGATAAGAACCTGTTTCGTCATGGCGGCGACAGCAGCAGTACCGTCCACTACTTCCACCACCGCCGTCCACATTCGCCGAAGCGACTTCCTCTCTCCGACCTCAAAAACCACCGCTATATTCTTCAACTACATCACTTCACTCCCAAAGCCGCTCAAATTCAGCGTCAGAAACTCCAACGACTCATCGGCGGAGACTGTCACAACGGACACGGCGAGTGAGCCGGAACCTGAAAGCTCACTCAAGGCCTCCGATGGATCGTCGTCTCTGATTTCGGCTCTCAACGTCGAACGAGCCCTCCGTGGAATTCCAATTACAGACGTGAATCACTACGGAAGACTCGGACTCCGAAGAGGATGTCCATATGATCAGGTTCCGATTGCGTACAACATCAAAGTTGAAGAACTAAAGAGCCAGGGATTAGAGGAAGAAGAACTCAACCAAAAACTCGAACTCCTAAAAGAATCTTACACGATATTGTCATCTGTTGAAGAGAGAAGAATGTACGATTGGAGCTTGTCCAGAATCGGAGAACCAGAAAAATATACGTGGCCGTTCGAGGCCGATATAACTCAGATTCAAACTCAATTGCCGCCGCCGAAGGAACCGGAAGACGAAGGACCGACGAGATTGGTGGGTTACTTCTTCTTAGGGTGGTTCGTTCTGTCCATCGTGTTATCTATTGCTCTGAATTTGTAGATTCGCCATTAACGGTATCTGTATAAACACAAGAACGGAAACCCCGCCAGTGATTTGAACCGAAGGAACTCGGATCATGGGCCCATTATAATATTGGGCCTTCTTAACTGTAAGTTGAGCCCAAATTTATAGCCCATAAAGTTGTGTCTATTCGTAGGCCCGTTGGAAAAAATTACTTTATATGAATAGTTTCAAATTTCATTTAGAATATAATATATACTCTAACC

Coding sequence (CDS)

ATGGCGGCGACAGCAGCAGTACCGTCCACTACTTCCACCACCGCCGTCCACATTCGCCGAAGCGACTTCCTCTCTCCGACCTCAAAAACCACCGCTATATTCTTCAACTACATCACTTCACTCCCAAAGCCGCTCAAATTCAGCGTCAGAAACTCCAACGACTCATCGGCGGAGACTGTCACAACGGACACGGCGAGTGAGCCGGAACCTGAAAGCTCACTCAAGGCCTCCGATGGATCGTCGTCTCTGATTTCGGCTCTCAACGTCGAACGAGCCCTCCGTGGAATTCCAATTACAGACGTGAATCACTACGGAAGACTCGGACTCCGAAGAGGATGTCCATATGATCAGGTTCCGATTGCGTACAACATCAAAGTTGAAGAACTAAAGAGCCAGGGATTAGAGGAAGAAGAACTCAACCAAAAACTCGAACTCCTAAAAGAATCTTACACGATATTGTCATCTGTTGAAGAGAGAAGAATGTACGATTGGAGCTTGTCCAGAATCGGAGAACCAGAAAAATATACGTGGCCGTTCGAGGCCGATATAACTCAGATTCAAACTCAATTGCCGCCGCCGAAGGAACCGGAAGACGAAGGACCGACGAGATTGGTGGGTTACTTCTTCTTAGGGTGGTTCGTTCTGTCCATCGTGTTATCTATTGCTCTGAATTTGTAG

Protein sequence

MAATAAVPSTTSTTAVHIRRSDFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTTDTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL

Homology

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BLAST of Carg10716 vs. NCBI nr
Match: KAG6608340.1 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037691.1 NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 432.6 bits (1111), Expect = 2.1e-117
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MAATAAVPSTTSTTAVHIRRSDFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETV 60
           MAATAAVPSTTSTTAVHIRRSDFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETV
Sbjct: 1   MAATAAVPSTTSTTAVHIRRSDFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETV 60

Query: 61  TTDTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPI 120
           TTDTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPI
Sbjct: 61  TTDTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPI 120

Query: 121 AYNIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFE 180
           AYNIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFE
Sbjct: 121 AYNIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFE 180

Query: 181 ADITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 226
           ADITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL
Sbjct: 181 ADITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 225

[Close]

BLAST of Carg10716 vs. NCBI nr
Match: XP_023524366.1 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 427.9 bits (1099), Expect = 5.3e-116
Identity = 221/225 (98.22%), Postives = 224/225 (99.56%), Query Frame = 0


Query: 1   MAATAAVPSTTSTTAVHIRRSDFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETV 60
           MAA AAVPSTTSTTAVHIRRS+FLSPTSKTTAIFFNYITSLPKPLKFS+RNSNDSSAETV
Sbjct: 1   MAAAAAVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSIRNSNDSSAETV 60

Query: 61  TTDTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPI 120
           TTDTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPI
Sbjct: 61  TTDTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPI 120

Query: 121 AYNIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFE 180
           AYNIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFE
Sbjct: 121 AYNIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFE 180

Query: 181 ADITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 226
           ADITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS+VLSIALNL
Sbjct: 181 ADITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALNL 225

[Close]

BLAST of Carg10716 vs. NCBI nr
Match: XP_022940147.1 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucurbita moschata])

HSP 1 Score: 426.4 bits (1095), Expect = 1.5e-115
Identity = 221/225 (98.22%), Postives = 224/225 (99.56%), Query Frame = 0


Query: 1   MAATAAVPSTTSTTAVHIRRSDFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETV 60
           MAA AAVPSTTSTTAVHIRRS+FLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETV
Sbjct: 1   MAAAAAVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETV 60

Query: 61  TTDTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPI 120
           TTDTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPI
Sbjct: 61  TTDTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPI 120

Query: 121 AYNIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFE 180
           AYNIKVEELKSQGLEEEEL+QKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFE
Sbjct: 121 AYNIKVEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFE 180

Query: 181 ADITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 226
           ADITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS+VLSIALNL
Sbjct: 181 ADITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALNL 225

[Close]

BLAST of Carg10716 vs. NCBI nr
Match: XP_022982411.1 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucurbita maxima])

HSP 1 Score: 424.5 bits (1090), Expect = 5.8e-115
Identity = 219/225 (97.33%), Postives = 222/225 (98.67%), Query Frame = 0


Query: 1   MAATAAVPSTTSTTAVHIRRSDFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETV 60
           MAA AAVPSTTSTT VHIRRS+FL PTSKTTAIFFNYITSLPKPLKFS+RNSNDSSAETV
Sbjct: 1   MAAAAAVPSTTSTTVVHIRRSNFLCPTSKTTAIFFNYITSLPKPLKFSIRNSNDSSAETV 60

Query: 61  TTDTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPI 120
           TTDTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPI
Sbjct: 61  TTDTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPI 120

Query: 121 AYNIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFE 180
           AYNIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFE
Sbjct: 121 AYNIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFE 180

Query: 181 ADITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 226
           ADITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS+VLSIALNL
Sbjct: 181 ADITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALNL 225

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BLAST of Carg10716 vs. NCBI nr
Match: XP_038898705.1 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Benincasa hispida])

HSP 1 Score: 383.3 bits (983), Expect = 1.5e-102
Identity = 198/223 (88.79%), Postives = 209/223 (93.72%), Query Frame = 0


Query: 3   ATAAVPSTTSTTAVHIRRSDFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTT 62
           A AAVPSTT+TT +HIRRS+FLSPT+KTTAI FN ITS PKPLKF +RN N+SSAET TT
Sbjct: 2   AAAAVPSTTTTTTIHIRRSNFLSPTAKTTAISFNPITSHPKPLKFIIRNYNESSAETATT 61

Query: 63  DTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 122
           +T +EPE ESSLKASD S SLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY
Sbjct: 62  ETTTEPEAESSLKASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 121

Query: 123 NIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEAD 182
           NIKVEELKSQGLEEEELNQKLELLKESY ILSSVEERRMYDWSL+RIGEP+KY+WPFEAD
Sbjct: 122 NIKVEELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEAD 181

Query: 183 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 226
           ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS VLSIALNL
Sbjct: 182 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSAVLSIALNL 224

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BLAST of Carg10716 vs. ExPASy Swiss-Prot
Match: Q84VQ4 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhU PE=1 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.6e-51
Identity = 112/220 (50.91%), Postives = 145/220 (65.91%), Query Frame = 0


Query: 5   AAVPSTTSTTAVHIRRSDFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTTDT 64
           A++ + T  + VHI     L     T +  +    +  + +    RNS++ SAE  T   
Sbjct: 2   ASLSTITQPSLVHIPGESVLHHVPSTCSFPWKPTINTKRIICSPARNSSEVSAEAETEGG 61

Query: 65  ASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 124
           +S    E    A   S SLISALNVERALRG+PITDV+HYGRLG+ R C YDQV I Y  
Sbjct: 62  SSTAVDE----APKESPSLISALNVERALRGLPITDVDHYGRLGIFRNCSYDQVTIGYKE 121

Query: 125 KVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADIT 184
           +V+ELK QGL+EE+L  K++L+KESYTILS+VEERRMYDWSL+R  + E+Y WPFE DI 
Sbjct: 122 RVKELKEQGLDEEQLKTKMDLIKESYTILSTVEERRMYDWSLARSEKAERYVWPFEVDIM 181

Query: 185 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALN 225
           +   + PPP+EPED GPTR++GYF   W VL + LS+A N
Sbjct: 182 EPSREEPPPQEPEDVGPTRILGYFIGAWLVLGVALSVAFN 217

[Close]

BLAST of Carg10716 vs. ExPASy TrEMBL
Match: A0A6J1FIT6 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445859 PE=4 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 7.4e-116
Identity = 221/225 (98.22%), Postives = 224/225 (99.56%), Query Frame = 0


Query: 1   MAATAAVPSTTSTTAVHIRRSDFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETV 60
           MAA AAVPSTTSTTAVHIRRS+FLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETV
Sbjct: 1   MAAAAAVPSTTSTTAVHIRRSNFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETV 60

Query: 61  TTDTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPI 120
           TTDTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPI
Sbjct: 61  TTDTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPI 120

Query: 121 AYNIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFE 180
           AYNIKVEELKSQGLEEEEL+QKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFE
Sbjct: 121 AYNIKVEELKSQGLEEEELSQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFE 180

Query: 181 ADITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 226
           ADITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS+VLSIALNL
Sbjct: 181 ADITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALNL 225

[Close]

BLAST of Carg10716 vs. ExPASy TrEMBL
Match: A0A6J1IZ95 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481243 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 2.8e-115
Identity = 219/225 (97.33%), Postives = 222/225 (98.67%), Query Frame = 0


Query: 1   MAATAAVPSTTSTTAVHIRRSDFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETV 60
           MAA AAVPSTTSTT VHIRRS+FL PTSKTTAIFFNYITSLPKPLKFS+RNSNDSSAETV
Sbjct: 1   MAAAAAVPSTTSTTVVHIRRSNFLCPTSKTTAIFFNYITSLPKPLKFSIRNSNDSSAETV 60

Query: 61  TTDTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPI 120
           TTDTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPI
Sbjct: 61  TTDTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPI 120

Query: 121 AYNIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFE 180
           AYNIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFE
Sbjct: 121 AYNIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFE 180

Query: 181 ADITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 226
           ADITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLS+VLSIALNL
Sbjct: 181 ADITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSVVLSIALNL 225

[Close]

BLAST of Carg10716 vs. ExPASy TrEMBL
Match: A0A6J1DBN8 (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018934 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 7.4e-100
Identity = 190/221 (85.97%), Postives = 205/221 (92.76%), Query Frame = 0


Query: 5   AAVPSTTSTTAVHIRRSDFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTTDT 64
           AA  S+T+ TAVHI RS+FLSPT KT AI FN ITSLPKPLKF +RNSNDSSAET  T+T
Sbjct: 2   AAAVSSTTATAVHISRSNFLSPTPKTAAISFNPITSLPKPLKFCIRNSNDSSAETAATET 61

Query: 65  ASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 124
           A+EPE ESS++A DG+ SLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI
Sbjct: 62  ATEPEQESSIEAPDGAPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 121

Query: 125 KVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADIT 184
           KVEELKSQGLE+EELNQKLELLKESYTILSSVEERRMYDWSL+RIGEP+KY+WPFEADIT
Sbjct: 122 KVEELKSQGLEDEELNQKLELLKESYTILSSVEERRMYDWSLARIGEPDKYSWPFEADIT 181

Query: 185 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 226
           QIQTQ+PPPKEPEDEGPTRLVGYF LGWF LS+VLSIALNL
Sbjct: 182 QIQTQMPPPKEPEDEGPTRLVGYFILGWFALSVVLSIALNL 222

[Close]

BLAST of Carg10716 vs. ExPASy TrEMBL
Match: A0A5A7VF89 (NAD(P)H-quinone oxidoreductase subunit U OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001750 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 8.2e-99
Identity = 195/223 (87.44%), Postives = 206/223 (92.38%), Query Frame = 0


Query: 3   ATAAVPSTTSTTAVHIRRSDFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTT 62
           A AAVPSTT+   VHIRRS+F SPTSK TAI FN ITS  KPLKF +RNSN+SSAET TT
Sbjct: 2   AAAAVPSTTT---VHIRRSNFFSPTSKPTAISFNPITSRSKPLKFIIRNSNESSAETATT 61

Query: 63  DTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 122
           +TA+E E ESSL+ASD S SLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY
Sbjct: 62  ETATEMEEESSLQASDESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 121

Query: 123 NIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEAD 182
           NIKV+ELKSQGLEEEELNQKLELLKESY ILSSVEERRMYDWSL+RIGEP+KY+WPFEAD
Sbjct: 122 NIKVQELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEAD 181

Query: 183 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 226
           ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL
Sbjct: 182 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221

[Close]

BLAST of Carg10716 vs. ExPASy TrEMBL
Match: A0A0A0L072 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G647480 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 8.2e-99
Identity = 195/223 (87.44%), Postives = 206/223 (92.38%), Query Frame = 0


Query: 3   ATAAVPSTTSTTAVHIRRSDFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTT 62
           A AAVPSTT+   VHIRRS+FLSPT+K T I FN ITS  KPLKF +RNSN+SSAET TT
Sbjct: 2   AAAAVPSTTT---VHIRRSNFLSPTTKHTLISFNPITSRSKPLKFIIRNSNESSAETATT 61

Query: 63  DTASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 122
           +TA+EPE ESSL+AS  S SLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY
Sbjct: 62  ETATEPEAESSLQASGESPSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAY 121

Query: 123 NIKVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEAD 182
           NIKVEELKSQGLEEEELNQKLELLKESY ILSSVEERRMYDWSL+RIGEP+KY+WPFEAD
Sbjct: 122 NIKVEELKSQGLEEEELNQKLELLKESYMILSSVEERRMYDWSLARIGEPDKYSWPFEAD 181

Query: 183 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 226
           ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL
Sbjct: 182 ITQIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALNL 221

[Close]

BLAST of Carg10716 vs. TAIR 10
Match: AT5G21430.1 (Chaperone DnaJ-domain superfamily protein )

HSP 1 Score: 204.1 bits (518), Expect = 1.1e-52
Identity = 112/220 (50.91%), Postives = 145/220 (65.91%), Query Frame = 0


Query: 5   AAVPSTTSTTAVHIRRSDFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTTDT 64
           A++ + T  + VHI     L     T +  +    +  + +    RNS++ SAE  T   
Sbjct: 2   ASLSTITQPSLVHIPGESVLHHVPSTCSFPWKPTINTKRIICSPARNSSEVSAEAETEGG 61

Query: 65  ASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 124
           +S    E    A   S SLISALNVERALRG+PITDV+HYGRLG+ R C YDQV I Y  
Sbjct: 62  SSTAVDE----APKESPSLISALNVERALRGLPITDVDHYGRLGIFRNCSYDQVTIGYKE 121

Query: 125 KVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADIT 184
           +V+ELK QGL+EE+L  K++L+KESYTILS+VEERRMYDWSL+R  + E+Y WPFE DI 
Sbjct: 122 RVKELKEQGLDEEQLKTKMDLIKESYTILSTVEERRMYDWSLARSEKAERYVWPFEVDIM 181

Query: 185 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALN 225
           +   + PPP+EPED GPTR++GYF   W VL + LS+A N
Sbjct: 182 EPSREEPPPQEPEDVGPTRILGYFIGAWLVLGVALSVAFN 217

[Close]

BLAST of Carg10716 vs. TAIR 10
Match: AT5G21430.2 (Chaperone DnaJ-domain superfamily protein )

HSP 1 Score: 198.0 bits (502), Expect = 8.2e-51
Identity = 111/220 (50.45%), Postives = 144/220 (65.45%), Query Frame = 0


Query: 5   AAVPSTTSTTAVHIRRSDFLSPTSKTTAIFFNYITSLPKPLKFSVRNSNDSSAETVTTDT 64
           A++ + T  + VHI     L     T +  +    +  + +    RNS++ SAE  T   
Sbjct: 2   ASLSTITQPSLVHIPGESVLHHVPSTCSFPWKPTINTKRIICSPARNSSEVSAEAETEGG 61

Query: 65  ASEPEPESSLKASDGSSSLISALNVERALRGIPITDVNHYGRLGLRRGCPYDQVPIAYNI 124
           +S    E    A   S SLISALNVERALRG+PITDV+HYGRLG+ R C YDQV I Y  
Sbjct: 62  SSTAVDE----APKESPSLISALNVERALRGLPITDVDHYGRLGIFRNCSYDQVTIGYKE 121

Query: 125 KVEELKSQGLEEEELNQKLELLKESYTILSSVEERRMYDWSLSRIGEPEKYTWPFEADIT 184
           +V+ELK QGL+EE+L  K++L+K SYTILS+VEERRMYDWSL+R  + E+Y WPFE DI 
Sbjct: 122 RVKELKEQGLDEEQLKTKMDLIK-SYTILSTVEERRMYDWSLARSEKAERYVWPFEVDIM 181

Query: 185 QIQTQLPPPKEPEDEGPTRLVGYFFLGWFVLSIVLSIALN 225
           +   + PPP+EPED GPTR++GYF   W VL + LS+A N
Sbjct: 182 EPSREEPPPQEPEDVGPTRILGYFIGAWLVLGVALSVAFN 216

The following BLAST results are available for this feature:

BLAST of Carg10716 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608340.1	2.1e-117	100.00	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic, partial [Cucurbita argy...	[more]
XP_023524366.1	5.3e-116	98.22	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucurbita pepo subsp. p...	[more]
XP_022940147.1	1.5e-115	98.22	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucurbita moschata]	[more]
XP_022982411.1	5.8e-115	97.33	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Cucurbita maxima]	[more]
XP_038898705.1	1.5e-102	88.79	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Benincasa hispida]	[more]

BLAST of Carg10716 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84VQ4	1.6e-51	50.91	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of Carg10716 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FIT6	7.4e-116	98.22	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Cucurbita moschata OX...	[more]
A0A6J1IZ95	2.8e-115	97.33	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Cucurbita maxima OX=3...	[more]
A0A6J1DBN8	7.4e-100	85.97	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Momordica charantia O...	[more]
A0A5A7VF89	8.2e-99	87.44	NAD(P)H-quinone oxidoreductase subunit U OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0L072	8.2e-99	87.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G647480 PE=4 SV=1	[more]

BLAST of Carg10716 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G21430.1	1.1e-52	50.91	Chaperone DnaJ-domain superfamily protein	[more]
AT5G21430.2	8.2e-51	50.45	Chaperone DnaJ-domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 126..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..78
IPR036869	Chaperone J-domain superfamily	GENE3D	1.10.287.110	DnaJ domain	coord: 98..173 e-value: 2.4E-5 score: 26.4
IPR036869	Chaperone J-domain superfamily	SUPERFAMILY	46565	Chaperone J-domain	coord: 101..167
IPR044199	NAD(P)H-quinone oxidoreductase subunit U, chloroplastic	PANTHER	PTHR47726	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT U, CHLOROPLASTIC	coord: 6..225

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10716-RA	Carg10716-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)