Carg10697 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10697
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr01: 11918861 .. 11921161 (-)
RNA-Seq ExpressionCarg10697
SyntenyCarg10697
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCTTTCTGTTTACAAAGTGCTTGGTTTGCAATCATCTCTAGTGGACTTAAAAGGAAAAGCAAACATTATTAATGAAGAACTTTCTTTGCTCTTATTGTTCTTAGTGCACTCGATTAGGAGAGTTAAAGGATTGAGTTCTTGATTGATTAACAGTTCAACTTGTTCTTATTGTTCTTATTTTGAACGATTCAGATACTTCAGCTGTCTTTCAATTTGAAAATGAATGGATACGATTTCTTGTGCTCTGTTAGGACAAAAGAGAATATATCTGAGTTAATAGCACCAATACTGAACCCATCTCATCATTCAGCTTCTTAGATAAGACAGGAAGGAAGAAAAAGATATCAAATCTTTTCTTCTATTAGAAGCTAAACCCAAGCCGACTGCTAGCAAATATTGTCCGCTTTGGCCCGTTACGTATCATTGTCAGTCTCACGGTTTTAAAACGCATCTGTTAGGGAATGGTTTCCACATTTTTATAAGGAATGCTTCGTTTTTCTTTACAACCACAGAGAGATCTCACGCACCCAGATGTTAATACACTGACAAATAGAAGTAGACGGTCCCAAAAATATAAGAAACCCAATGCTGTGTCTGTCAGCCCTGTGAATCCAGTTCATCATAAGCTAGCTTTATTTGAGTAGAGCATGGCCTGAAGTCAGTCTGCCAAAGTGTCACATGGGTTTTTCAGGTTATCTCCATTCACGCTTCAGGAGTAGGGTAGGCATCTTTCCAGTCGTCCTACCACAAATTTTTGCTATCAATCACATGACTGGTTGCGATTAGAAGAATCATAAACTCTAAGGAATTTAGAGCAGAAAGCTTGGGAAAGAAGTGTTCTTGAATGCTGCATGCATTTGGTTGGATTCCACATTTTTTTTCTGTTCTTTTCATCTTTCATTAGAGATTTGTTGGCAAAACAAAGCAGTCAGTGGAGTGAGTGAATGATTTGGCTGTTAATTCCTTCCTTTTCAGGGGACACTTTGTTTCTGCAATGAGTCCCCACAGCCTATACAACTGCTTGCTGCGCTGCTACACATGTTTGTTTGCAATAATGGAGATGATAAAAGGATGGGGTTATCAAATTATGGATCCATCTCCCTCAACTCTGTCCTTTCACTTGTAGATCTTTCTTAGCTGTGTTGTTATGAACTGTGGTGAGTGTTATTAGTTCTTGGATGCTTGAATCATTAGTGATCCAAGTAGAAGAAAGCTGGTTCTTATAAACTTGAAAAAATGGCAGAAGCAGAAGAGAAGTTGAGTTTGAAAAGTAAAAGACTGTTCATAATACTATTCTTTTGCATTTTGGTTGGTAGTGCATTTTTCTGTCAACGATGTTGACACTCTTTTTTTTCTTTTTTTTTTTTCTTCATTATCTTCTGTCATTATTGGCTCTATTATGCCCTTTCAGTGCGCTCCTCATTATTGCATCTTTATTCACAAACTCTCTTGTTTCTCAACTTTGTTTAGTTTTAATCTGTGGTCCATCTTTGAATATCCTTGTTTATTTGTTTATTTGGGTGTTTATCGATTCATCCGTATTCGCAAACTCGATTCTTTGGACCAAAGTATTTTCTGACGTTCGAAAATGAATGACTTTCTATACTTTAGATATTTGATATAGGAACATCTTTCTCGTCTTCACACAACGATGGAGAATCTTTGTACGACAATCAAGACGTTTAATCAAACGTAGTCAATTTGCATTCTTCTTATGACTTTTCTTCTTCCTCTTGGTGTCATTTTTTTAGTACCCTCAACCACGTCATTCTTAGTCTTCTTAGCCTTCCTCCTGTACATAACCTTATCAATGTTTGAAAGTCGTGCACCAAACTTTGTATCATTAGTCCTCCTTTGATCAACCATGTTGTTTTTATGTAGGAACGATCTTCGAGTAATACATGGTAAGACGATACTTTTTTTCAGCCATTTAATCATCTAACATTATGTTGCTCCTTATTTTCTCCATCGTCTCAAAGGCAACTTTGACTAAGTCCTCGTAATTATCAAATTCAATGAAGGAAAATAACATTTTTCAATTTAAAATCCCTTCATATCCTAGTTGTCATTCACATGCTTTAACTCTAAGTCATACAGCTCCTCATGTATCTCCTTCGACGTCTAAGTTCGATAATGAGGTGGAAATTTTCTTAACCAATCATGTTAAACTAAGTGCAAGAGGAGTAAAATTCAAATGGATTCTTGTTTTTTTTTCTAGTCTAAACTCGATCAGAATCAAGATCAAACAAAAAGAGAAAACGCTAGCCTCGATTCCCGATCATTTTCTGACCTATGA

mRNA sequence

ATGCCTCTTTCTGTTTACAAAGGGACACTTTGTTTCTGCAATGAGTCCCCACAGCCTATACAACTGCTTGCTGCGCTGCTACACATTACCCTCAACCACGTCATTCTTAGTCTTCTTAGCCTTCCTCCTGTACATAACCTTATCAATTCTAAACTCGATCAGAATCAAGATCAAACAAAAAGAGAAAACGCTAGCCTCGATTCCCGATCATTTTCTGACCTATGA

Coding sequence (CDS)

ATGCCTCTTTCTGTTTACAAAGGGACACTTTGTTTCTGCAATGAGTCCCCACAGCCTATACAACTGCTTGCTGCGCTGCTACACATTACCCTCAACCACGTCATTCTTAGTCTTCTTAGCCTTCCTCCTGTACATAACCTTATCAATTCTAAACTCGATCAGAATCAAGATCAAACAAAAAGAGAAAACGCTAGCCTCGATTCCCGATCATTTTCTGACCTATGA

Protein sequence

MPLSVYKGTLCFCNESPQPIQLLAALLHITLNHVILSLLSLPPVHNLINSKLDQNQDQTKRENASLDSRSFSDL
Homology
[Close]
BLAST of Carg10697 vs. NCBI nr
Match: KAG7037710.1 (hypothetical protein SDJN02_01340, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MPLSVYKGTLCFCNESPQPIQLLAALLHITLNHVILSLLSLPPVHNLINSKLDQNQDQTK 60
          MPLSVYKGTLCFCNESPQPIQLLAALLHITLNHVILSLLSLPPVHNLINSKLDQNQDQTK
Sbjct: 1  MPLSVYKGTLCFCNESPQPIQLLAALLHITLNHVILSLLSLPPVHNLINSKLDQNQDQTK 60

Query: 61 RENASLDSRSFSDL 75
          RENASLDSRSFSDL
Sbjct: 61 RENASLDSRSFSDL 74

The following BLAST results are available for this feature:
BLAST of Carg10697 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037710.11.3e-31100.00hypothetical protein SDJN02_01340, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg10697 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10697 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10697 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10697-RACarg10697-RAmRNA