Carg10678 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10678
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr01: 12006552 .. 12008234 (+)
RNA-Seq ExpressionCarg10678
SyntenyCarg10678
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGGGAAGGCAAGACGACGTCGTAAAGGTGGAAGGATTGGGAGATGGAAGGAGAGTCGTTTGATTTGTGATGAACGGGGGAGAAATCACGGGCGTGGGATATTGATTCAATCTGTAATTGAGGGTATAAATTTCCGATTCATCTAGGACGGGGGGGAAGGGTGTGTTTTGTATTTGTGGTAAAACGAGGGGACGAACAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCTCTCTGCTGTTCTTGTGGCGCTCCTTTGAAGCTTTTCCCTTTTGTTCTTAATCTCTCGTTATTGTTTTTTAATCGAGGACGAAGCTTAGTGTTCTAAATTCTAGTCCAGAATGCCGAGGATCTGTCATTTGTAGACAAGCTTGCGGGTGGAACAATTTCGCTCCGTGCTTCAATTTTTCTCCGTCCTCTGCAATTGATCCATCTGAAGGGTTGATTAAAGAGACTTGGATTTTCTTTTTTGTTTAATTTTTTTTTTTCACGGATACATTCGGGAATTTTTAGTTCAAGAAATTCGGTGTGGATTTGATTTCTGAGCGAATTTTGCTCCCTAATTTGCTCTATCGATGCCGTCTCGTTTGTAATCGTCGGAGGGCGGTTGTGAAGATTACGGAGGCTTGAATTTTTTGTGAGAATTCTTTTACTCTGTTGTCAGTTATTTGTATTTTTGTGTTGTGGAATAACTCTGTTAATTGATTTTCTTTAATTTGTTCTTCCTTGTAGATGCATTTGAACGGATTTAAGCGTTTGTGTGAAGAAATCCGCAGTGTTGTATAGATTGGAGATTGGATGTTGCCGATGGAAATACGGTTGTTCTTCGACAGTCATAGAAGACGACTCTGAGAGATGGAATTCCATCGTTCTAATTTGGTTTCTGATTCGCATTCTCGCTTAGTCTGAAGAGCAAACGAAGCAAAACTCGTCTTGATTTTTGGCTGTTCTTGGAATTTCTTTGTATCACAGGTAAAGAAAATTTTCCTGAATCGTAGATCGTAAATATTTTAGTAGGATTTTGAGATTTAGTACGGAATTTTGATTTGTAGTTGTTTTATACTGTGGCTTCTTTCGTTTTCCCCCCATTTGGTGGTTGAGGTCGGAGGTGTTCTTTTGAATTCCGACTTCTATTTGATTCTTCTTTATCTTTATCTAATGAGACCAATCGGCTTCCTATACTTCTCTTTTGTTTGCTTCAGTTGATGTTTTCAGGTAATGCATCAATTTTATTCATCTCGCTCTTCTTGAAGAAATGTTCTACTTGCTTCTATTATTCTCCTTTCCCTCATTTCGAAGAACCCTAGAATTTCTTTTATTCTTGTGGCGATTGAGAATATCTTTCCATCTTCAGAACTGTTCATCGATGGAATTTACCCCTCCATTTGATTTCTCGCTATTGGGAGATCGCCAGTTCGAATTTTCCCTGTTTTCTTTTTGTTTTTTGTTTTTTGTTCCTGTTACCCATTACTGGATTTCTGGCTTAGATCTATGATCTTCTGCACCTAAAAGGAAAAGAAACCTCCTCATTTCGATTCTTGTAATCAACTTTTCCTGATTTTGATCTCGAATAATCAAATTCCTAGCAGAGTTCTGTTTCTTTTTTTTTTTTTTTTTTTTTTTTCTCCTCCAGCGCTCTCAATTATGAGTTATCTGAACTTGGATATAGCTGGATGA

mRNA sequence

ATGGTGAAGGGAAGGCAAGACGACGTCGTAAAGGTGGAAGGATTGGGAGATGGAAGGAGAGTCATGCATTTGAACGGATTTAAGCGTTTGTGTGAAGAAATCCGCAGTGTTAGCAAACGAAGCAAAACTCGTCTTGATTTTTGGCTGTTCTTGGAATTTCTTTGTATCACAGCGCTCTCAATTATGAGTTATCTGAACTTGGATATAGCTGGATGA

Coding sequence (CDS)

ATGGTGAAGGGAAGGCAAGACGACGTCGTAAAGGTGGAAGGATTGGGAGATGGAAGGAGAGTCATGCATTTGAACGGATTTAAGCGTTTGTGTGAAGAAATCCGCAGTGTTAGCAAACGAAGCAAAACTCGTCTTGATTTTTGGCTGTTCTTGGAATTTCTTTGTATCACAGCGCTCTCAATTATGAGTTATCTGAACTTGGATATAGCTGGATGA

Protein sequence

MVKGRQDDVVKVEGLGDGRRVMHLNGFKRLCEEIRSVSKRSKTRLDFWLFLEFLCITALSIMSYLNLDIAG
Homology
[Close]
BLAST of Carg10678 vs. NCBI nr
Match: KAG7037729.1 (hypothetical protein SDJN02_01359, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.4 bits (363), Expect = 3.7e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MVKGRQDDVVKVEGLGDGRRVMHLNGFKRLCEEIRSVSKRSKTRLDFWLFLEFLCITALS 60
          MVKGRQDDVVKVEGLGDGRRVMHLNGFKRLCEEIRSVSKRSKTRLDFWLFLEFLCITALS
Sbjct: 1  MVKGRQDDVVKVEGLGDGRRVMHLNGFKRLCEEIRSVSKRSKTRLDFWLFLEFLCITALS 60

Query: 61 IMSYLNLDIAG 72
          IMSYLNLDIAG
Sbjct: 61 IMSYLNLDIAG 71

The following BLAST results are available for this feature:
BLAST of Carg10678 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037729.13.7e-31100.00hypothetical protein SDJN02_01359, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg10678 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10678 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10678 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10678-RACarg10678-RAmRNA