Carg10660 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10660
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRNA-binding protein 1-like
LocationCarg_Chr01: 12083445 .. 12084191 (-)
RNA-Seq ExpressionCarg10660
SyntenyCarg10660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTCGTCCACAATCGTAGGAAAAGAAACTGTGGAGCTAGCTAGAGAACAAAGAATGAGTAATGGTACTAGGATGGAAGATCAATTTAGGGGCAGAAAGATTTTTGTTGGAGGATTATCGGCTGAATTGACTGAAGATGACTTCAAAAGTTACTTTGAAAAGTTTGGTCGGGTAACTGACGTAGTCGTGATGCGTGATAGTGTAACTAAACGCCCTAGAGGATTTGGATTTATCACGTTTGATTCTGTACAATCCGTTGACTCTGTTCTTCAAAATAATTTTCATGAGTTAAATGGTAGGCGTGTGGAGGTGAAGAGAGCCATCCCAAAAAAGGGGAACTACAATGGCGGCCATATTTCCAAAAGCCCTCTTTCTGAAAGCAATGTTCTTCCCTCTTACCCATATTATAGCTGTGGTTATACAGTTTATCCTGGTTTTACACCTTTTCCACCTTATGGACCAGGTTTTGGTTTATATGGCTCAGACCCCTATGGGAATTGGTTTTCCCCCAGCTTTGGTCCCATGGCTTCACCAGCTGCATGGTATGCTCCAAATTTCTTTGGAATGTTTCCTCCACCTCATAAAGATTCTCTAGTTTATCCAACGTATTCAAGCAACGGGCTATCTACTCCGGTGGCTGGATATGAAACTGCTGATGCGAGAAGAAAGGTTGATCCCCCCACTCGTGCACAGAAAAATATGTCGGCTGACGCAGTGCCATTTCATGCTAAGGATAAAGCTTGA

mRNA sequence

ATGTTTTCGTCCACAATCGTAGGAAAAGAAACTGTGGAGCTAGCTAGAGAACAAAGAATGAGTAATGGTACTAGGATGGAAGATCAATTTAGGGGCAGAAAGATTTTTGTTGGAGGATTATCGGCTGAATTGACTGAAGATGACTTCAAAAGTTACTTTGAAAAGTTTGGTCGGGTAACTGACGTAGTCGTGATGCGTGATAGTGTAACTAAACGCCCTAGAGGATTTGGATTTATCACGTTTGATTCTGTACAATCCGTTGACTCTGTTCTTCAAAATAATTTTCATGAGTTAAATGGTAGGCGTGTGGAGGTGAAGAGAGCCATCCCAAAAAAGGGGAACTACAATGGCGGCCATATTTCCAAAAGCCCTCTTTCTGAAAGCAATGTTCTTCCCTCTTACCCATATTATAGCTGTGGTTATACAGTTTATCCTGGTTTTACACCTTTTCCACCTTATGGACCAGGTTTTGGTTTATATGGCTCAGACCCCTATGGGAATTGGTTTTCCCCCAGCTTTGGTCCCATGGCTTCACCAGCTGCATGGTATGCTCCAAATTTCTTTGGAATGTTTCCTCCACCTCATAAAGATTCTCTAGTTTATCCAACGTATTCAAGCAACGGGCTATCTACTCCGGTGGCTGGATATGAAACTGCTGATGCGAGAAGAAAGGTTGATCCCCCCACTCGTGCACAGAAAAATATGTCGGCTGACGCAGTGCCATTTCATGCTAAGGATAAAGCTTGA

Coding sequence (CDS)

ATGTTTTCGTCCACAATCGTAGGAAAAGAAACTGTGGAGCTAGCTAGAGAACAAAGAATGAGTAATGGTACTAGGATGGAAGATCAATTTAGGGGCAGAAAGATTTTTGTTGGAGGATTATCGGCTGAATTGACTGAAGATGACTTCAAAAGTTACTTTGAAAAGTTTGGTCGGGTAACTGACGTAGTCGTGATGCGTGATAGTGTAACTAAACGCCCTAGAGGATTTGGATTTATCACGTTTGATTCTGTACAATCCGTTGACTCTGTTCTTCAAAATAATTTTCATGAGTTAAATGGTAGGCGTGTGGAGGTGAAGAGAGCCATCCCAAAAAAGGGGAACTACAATGGCGGCCATATTTCCAAAAGCCCTCTTTCTGAAAGCAATGTTCTTCCCTCTTACCCATATTATAGCTGTGGTTATACAGTTTATCCTGGTTTTACACCTTTTCCACCTTATGGACCAGGTTTTGGTTTATATGGCTCAGACCCCTATGGGAATTGGTTTTCCCCCAGCTTTGGTCCCATGGCTTCACCAGCTGCATGGTATGCTCCAAATTTCTTTGGAATGTTTCCTCCACCTCATAAAGATTCTCTAGTTTATCCAACGTATTCAAGCAACGGGCTATCTACTCCGGTGGCTGGATATGAAACTGCTGATGCGAGAAGAAAGGTTGATCCCCCCACTCGTGCACAGAAAAATATGTCGGCTGACGCAGTGCCATTTCATGCTAAGGATAAAGCTTGA

Protein sequence

MFSSTIVGKETVELAREQRMSNGTRMEDQFRGRKIFVGGLSAELTEDDFKSYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNFFGMFPPPHKDSLVYPTYSSNGLSTPVAGYETADARRKVDPPTRAQKNMSADAVPFHAKDKA
Homology
BLAST of Carg10660 vs. NCBI nr
Match: KAG7037746.1 (RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 509.2 bits (1310), Expect = 2.0e-140
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0

Query: 1   MFSSTIVGKETVELAREQRMSNGTRMEDQFRGRKIFVGGLSAELTEDDFKSYFEKFGRVT 60
           MFSSTIVGKETVELAREQRMSNGTRMEDQFRGRKIFVGGLSAELTEDDFKSYFEKFGRVT
Sbjct: 1   MFSSTIVGKETVELAREQRMSNGTRMEDQFRGRKIFVGGLSAELTEDDFKSYFEKFGRVT 60

Query: 61  DVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHI 120
           DVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHI
Sbjct: 61  DVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHI 120

Query: 121 SKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPA 180
           SKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPA
Sbjct: 121 SKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPA 180

Query: 181 AWYAPNFFGMFPPPHKDSLVYPTYSSNGLSTPVAGYETADARRKVDPPTRAQKNMSADAV 240
           AWYAPNFFGMFPPPHKDSLVYPTYSSNGLSTPVAGYETADARRKVDPPTRAQKNMSADAV
Sbjct: 181 AWYAPNFFGMFPPPHKDSLVYPTYSSNGLSTPVAGYETADARRKVDPPTRAQKNMSADAV 240

Query: 241 PFHAKDKA 249
           PFHAKDKA
Sbjct: 241 PFHAKDKA 248

BLAST of Carg10660 vs. NCBI nr
Match: XP_022982410.1 (RNA-binding protein 1-like [Cucurbita maxima])

HSP 1 Score: 468.0 bits (1203), Expect = 5.0e-128
Identity = 224/229 (97.82%), Postives = 228/229 (99.56%), Query Frame = 0

Query: 20  MSNGTRMEDQFRGRKIFVGGLSAELTEDDFKSYFEKFGRVTDVVVMRDSVTKRPRGFGFI 79
           MSNGTRMEDQFRGRKIFVGGLSAELTEDDFK+YFEKFGRVTDVVVMRDSVTKRPRGFGFI
Sbjct: 1   MSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFI 60

Query: 80  TFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSC 139
           TFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSC
Sbjct: 61  TFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSC 120

Query: 140 GYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNFFGMFPPPHKDSL 199
           GYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWY PNFFGMFPPPHK+SL
Sbjct: 121 GYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSL 180

Query: 200 VYPTYSSNGLSTPVAGYETADARRKVDPPTRAQKNMSADAVPFHAKDKA 249
           VYPTYSSNGLSTPVAGYETADARRKV+PPTRAQKNMSADAVPFHAKD+A
Sbjct: 181 VYPTYSSNGLSTPVAGYETADARRKVEPPTRAQKNMSADAVPFHAKDRA 229

BLAST of Carg10660 vs. NCBI nr
Match: XP_023524364.1 (RNA-binding protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 467.6 bits (1202), Expect = 6.6e-128
Identity = 224/229 (97.82%), Postives = 228/229 (99.56%), Query Frame = 0

Query: 20  MSNGTRMEDQFRGRKIFVGGLSAELTEDDFKSYFEKFGRVTDVVVMRDSVTKRPRGFGFI 79
           MSNGTRMEDQFRGRKIFVGGLSAELTEDDFK+YFEKFGRVTDVVVMRDSVTKRPRGFGFI
Sbjct: 1   MSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFI 60

Query: 80  TFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSC 139
           TFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSC
Sbjct: 61  TFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSC 120

Query: 140 GYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNFFGMFPPPHKDSL 199
           GYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNFFGMFPPPHK+SL
Sbjct: 121 GYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNFFGMFPPPHKNSL 180

Query: 200 VYPTYSSNGLSTPVAGYETADARRKVDPPTRAQKNMSADAVPFHAKDKA 249
           VYPTYSSNGLSTPVAGYETAD RRKV+PP+RAQKNMSADAVPFHAKDKA
Sbjct: 181 VYPTYSSNGLSTPVAGYETADGRRKVEPPSRAQKNMSADAVPFHAKDKA 229

BLAST of Carg10660 vs. NCBI nr
Match: XP_022940975.1 (RNA-binding protein 1-like [Cucurbita moschata])

HSP 1 Score: 467.2 bits (1201), Expect = 8.6e-128
Identity = 225/229 (98.25%), Postives = 227/229 (99.13%), Query Frame = 0

Query: 20  MSNGTRMEDQFRGRKIFVGGLSAELTEDDFKSYFEKFGRVTDVVVMRDSVTKRPRGFGFI 79
           M NGT MEDQFRGRKIFVGGLSAELTEDDFK+YFEKFGRVTDVVVMRDSVTKRPRGFGFI
Sbjct: 1   MINGTGMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFI 60

Query: 80  TFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSC 139
           TFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSC
Sbjct: 61  TFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSC 120

Query: 140 GYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNFFGMFPPPHKDSL 199
           GYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNFFGMFPPPHK+SL
Sbjct: 121 GYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNFFGMFPPPHKNSL 180

Query: 200 VYPTYSSNGLSTPVAGYETADARRKVDPPTRAQKNMSADAVPFHAKDKA 249
           VYPTYSSNGLSTPVAGYETADARRKVDPPTRAQKNMSADAVPFHAKDKA
Sbjct: 181 VYPTYSSNGLSTPVAGYETADARRKVDPPTRAQKNMSADAVPFHAKDKA 229

BLAST of Carg10660 vs. NCBI nr
Match: KAG6608405.1 (RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 416.4 bits (1069), Expect = 1.7e-112
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 0

Query: 50  KSYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAI 109
           KSYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAI
Sbjct: 4   KSYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAI 63

Query: 110 PKKGNYNGGHISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWF 169
           PKKGNYNGGHISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWF
Sbjct: 64  PKKGNYNGGHISKSPLSESNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWF 123

Query: 170 SPSFGPMASPAAWYAPNFFGMFPPPHKDSLVYPTYSSNGLSTPVAGYETADARRKVDPPT 229
           SPSFGPMASPAAWYAPNFFGMFPPPHKDSLVYPTYSSNGLSTPVAGYETADARRKVDPPT
Sbjct: 124 SPSFGPMASPAAWYAPNFFGMFPPPHKDSLVYPTYSSNGLSTPVAGYETADARRKVDPPT 183

Query: 230 RAQKNMSADAVPFHAKDKA 249
           RAQKNMSADAVPFHAKDKA
Sbjct: 184 RAQKNMSADAVPFHAKDKA 202

BLAST of Carg10660 vs. ExPASy Swiss-Prot
Match: Q9C652 (RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.5e-29
Identity = 91/213 (42.72%), Postives = 119/213 (55.87%), Query Frame = 0

Query: 18  QRMSNGTRMEDQ----FRGRKIFVGGLSAELTEDDFKSYFEKFGRVTDVVVMRDSVTKRP 77
           Q+M+ G R         R +KIFVGGLS+  TE++FKSYFE+FGR TDVVVM D VT RP
Sbjct: 101 QQMNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRP 160

Query: 78  RGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKG--NYNGGHISKSPLSESNVL 137
           RGFGF+T+DS  SV+ V+Q+NFHEL+ +RVEVKRAIPK+G  + NG  ++  P   S   
Sbjct: 161 RGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKEGIQSNNGNAVNIPPSYSSFQA 220

Query: 138 PSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSD-PYGNWFSPSFGPMASPAAWYAPNFFGM 197
             Y     GY +   F P P +G    +     PYG  F+     ++       P  F  
Sbjct: 221 TPYVPEQNGYGMVLQFPP-PVFGYHHNVQAVQYPYGYQFTAQVANVSWNNPIMQPTGFYC 280

Query: 198 FP----PPHKDSLVYPTYSSNGL---STPVAGY 217
            P    PP  ++L Y  Y  NG     T ++GY
Sbjct: 281 APPHPTPPPTNNLGYIQY-MNGFDLSGTNISGY 311

BLAST of Carg10660 vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.1e-24
Identity = 64/140 (45.71%), Postives = 80/140 (57.14%), Query Frame = 0

Query: 33  RKIFVGGLSAELTEDDFKSYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSVLQ 92
           +KIFVGGL   LT+++F+ YFE +G VTDV +M D  T RPRGFGF++FDS  +VDSVL 
Sbjct: 110 KKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLH 169

Query: 93  NNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSCGYTVYPG------ 152
             FH+L+G++VEVKRA+PK  N  GG  S            Y  Y    + Y G      
Sbjct: 170 KTFHDLSGKQVEVKRALPKDANPGGGGRSMGGGGSG----GYQGYGGNESSYDGRMDSNR 229

Query: 153 FTPFPPYGPGFGLYGSDPYG 167
           F      G G   YGS  YG
Sbjct: 230 FLQHQSVGNGLPSYGSSGYG 245

BLAST of Carg10660 vs. ExPASy Swiss-Prot
Match: Q9JII5 (DAZ-associated protein 1 OS=Mus musculus OX=10090 GN=Dazap1 PE=1 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 4.0e-19
Identity = 66/173 (38.15%), Postives = 87/173 (50.29%), Query Frame = 0

Query: 28  DQFRGRKIFVGGLSAELTEDDFKSYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSV 87
           D  +  KIFVGG+     E + + YF+KFG VT+VV++ D+  +RPRGFGFITF+  QSV
Sbjct: 108 DSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 167

Query: 88  DSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSCGY---TVY 147
           D  +  +FH++ G++VEVKRA P+           +    S V PS      G    T  
Sbjct: 168 DQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPPPTWQ 227

Query: 148 PGFTP---FPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNFFGMFPPP 195
            G+ P   + P G   G YG  P G    P   P  S      P   G FPPP
Sbjct: 228 QGYGPQGMWVPAGQAIGGYGPPPAGRGAPPPPPPFTSYIVSTPP---GGFPPP 277

BLAST of Carg10660 vs. ExPASy Swiss-Prot
Match: Q96EP5 (DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.2e-19
Identity = 65/173 (37.57%), Postives = 88/173 (50.87%), Query Frame = 0

Query: 28  DQFRGRKIFVGGLSAELTEDDFKSYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSV 87
           D  +  KIFVGG+     E + + YF+KFG VT+VV++ D+  +RPRGFGFITF+  QSV
Sbjct: 108 DNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 167

Query: 88  DSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSCGY---TVY 147
           D  +  +FH++ G++VEVKRA P+           +    S V+P+      G    T  
Sbjct: 168 DQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQ 227

Query: 148 PGFTP---FPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNFFGMFPPP 195
            G+ P   + P G   G YG  P G    P   P  S      P   G FPPP
Sbjct: 228 QGYGPQGMWVPAGQAIGGYGPPPAGRGAPPPPPPFTSYIVSTPP---GGFPPP 277

BLAST of Carg10660 vs. ExPASy Swiss-Prot
Match: P22626 (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens OX=9606 GN=HNRNPA2B1 PE=1 SV=2)

HSP 1 Score: 96.3 bits (238), Expect = 5.2e-19
Identity = 51/117 (43.59%), Postives = 77/117 (65.81%), Query Frame = 0

Query: 10  ETVELAREQRMSNGTRMEDQFRGRKIFVGGLSAELTEDDFKSYFEKFGRVTDVVVMRDSV 69
           ETV L R++      R ++QF  RK+F+GGLS E TE+  ++Y+E++G++TD VVMRD  
Sbjct: 6   ETVPLERKK------REKEQF--RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPA 65

Query: 70  TKRPRGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPK-KGNYNGGHISKSPL 126
           +KR RGFGF+TF S+  VD+ +    H ++GR VE KRA+ + +    G H++   L
Sbjct: 66  SKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKL 114

BLAST of Carg10660 vs. ExPASy TrEMBL
Match: A0A6J1J2K5 (RNA-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481242 PE=4 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 2.4e-128
Identity = 224/229 (97.82%), Postives = 228/229 (99.56%), Query Frame = 0

Query: 20  MSNGTRMEDQFRGRKIFVGGLSAELTEDDFKSYFEKFGRVTDVVVMRDSVTKRPRGFGFI 79
           MSNGTRMEDQFRGRKIFVGGLSAELTEDDFK+YFEKFGRVTDVVVMRDSVTKRPRGFGFI
Sbjct: 1   MSNGTRMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFI 60

Query: 80  TFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSC 139
           TFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSC
Sbjct: 61  TFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSC 120

Query: 140 GYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNFFGMFPPPHKDSL 199
           GYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWY PNFFGMFPPPHK+SL
Sbjct: 121 GYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNFFGMFPPPHKNSL 180

Query: 200 VYPTYSSNGLSTPVAGYETADARRKVDPPTRAQKNMSADAVPFHAKDKA 249
           VYPTYSSNGLSTPVAGYETADARRKV+PPTRAQKNMSADAVPFHAKD+A
Sbjct: 181 VYPTYSSNGLSTPVAGYETADARRKVEPPTRAQKNMSADAVPFHAKDRA 229

BLAST of Carg10660 vs. ExPASy TrEMBL
Match: A0A6J1FS87 (RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111446397 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 4.2e-128
Identity = 225/229 (98.25%), Postives = 227/229 (99.13%), Query Frame = 0

Query: 20  MSNGTRMEDQFRGRKIFVGGLSAELTEDDFKSYFEKFGRVTDVVVMRDSVTKRPRGFGFI 79
           M NGT MEDQFRGRKIFVGGLSAELTEDDFK+YFEKFGRVTDVVVMRDSVTKRPRGFGFI
Sbjct: 1   MINGTGMEDQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFI 60

Query: 80  TFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSC 139
           TFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSC
Sbjct: 61  TFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLPSYPYYSC 120

Query: 140 GYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNFFGMFPPPHKDSL 199
           GYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNFFGMFPPPHK+SL
Sbjct: 121 GYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNFFGMFPPPHKNSL 180

Query: 200 VYPTYSSNGLSTPVAGYETADARRKVDPPTRAQKNMSADAVPFHAKDKA 249
           VYPTYSSNGLSTPVAGYETADARRKVDPPTRAQKNMSADAVPFHAKDKA
Sbjct: 181 VYPTYSSNGLSTPVAGYETADARRKVDPPTRAQKNMSADAVPFHAKDKA 229

BLAST of Carg10660 vs. ExPASy TrEMBL
Match: A0A0A0L563 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G644730 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 8.0e-63
Identity = 139/241 (57.68%), Postives = 166/241 (68.88%), Query Frame = 0

Query: 24  TRME---DQFRGRKIFVGGLSAELTEDDFKSYFEKFGRVTDVVVMRDSVTKRPRGFGFIT 83
           TRM+   DQ RGRKIFVGGLSAELTE++F+SYFE FG++TDVVVM DSVT RPRGFGF+T
Sbjct: 4   TRMDNNNDQCRGRKIFVGGLSAELTEEEFRSYFENFGQITDVVVMHDSVTNRPRGFGFVT 63

Query: 84  FDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHI-----SKSPL--SESNVLPS 143
           F+S++SVDSVLQ NFHELNGRRVEVKRAIPKKGNYNG HI     +KSPL     NV   
Sbjct: 64  FESLESVDSVLQRNFHELNGRRVEVKRAIPKKGNYNGVHIPNARAAKSPLLNGNRNVPFP 123

Query: 144 YPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNFF--GMF 203
           YPYY  GY +YPGFT FP YG     YGS+ YGNWF P    +AS   W+ PNFF  GM 
Sbjct: 124 YPYYGSGYPIYPGFTHFPHYGAAVDSYGSNFYGNWFPPGSANIASDGWWHGPNFFSVGML 183

Query: 204 PPPHKDSLVYPTY-----SSNGLSTPVAGYETADARRKVDPPTRAQKNMSADAVPFHAKD 248
           PP  ++SL++P+      S NG++    G        ++   T  ++ MSADA PF  KD
Sbjct: 184 PPLCRNSLMHPSKGIYIGSRNGMANTRNG--------EIKQNTAGKRIMSADAAPFQIKD 236

BLAST of Carg10660 vs. ExPASy TrEMBL
Match: A0A6J1C724 (RNA-binding protein 1-like OS=Momordica charantia OX=3673 GN=LOC111008498 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 1.0e-54
Identity = 133/243 (54.73%), Postives = 164/243 (67.49%), Query Frame = 0

Query: 22  NGTRME---DQFRGRKIFVGGLSAELTEDDFKSYFEKFGRVTDVVVMRDSVTKRPRGFGF 81
           +  RME   DQ RG+KIFVGGL ++LTE++FKSYFEKFG++TDVVVM+DSVT RPRGFGF
Sbjct: 4   SSNRMESNNDQSRGKKIFVGGLPSDLTENEFKSYFEKFGQITDVVVMQDSVTNRPRGFGF 63

Query: 82  ITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGH--ISKSPLSESNVLPSYPY 141
           ITFDSV+SV+ VLQNNFHELNGRRVEVKRA+PK  N N  +    KSPLS  +V   YP+
Sbjct: 64  ITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSNPQRGKSPLS-PHVPLYYPH 123

Query: 142 YSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNW-FSPSFG------PMASPAAWYAPNFF- 201
           +S G  VYPG+ PFP Y      YGS  YG+W ++  +G      P+   +AWYAPN F 
Sbjct: 124 FSSGPVVYPGYAPFPHY------YGSSLYGSWHYNGLYGTGHEAPPLPLGSAWYAPNVFG 183

Query: 202 -GMFPPPHKDSLVYPTYSSNG--LSTPVAGYETADARRKVDPPTRAQKNMSADAVPFHAK 249
            GMFP P+ +S+++P YSS G  L  P+AG              R   NMSADAVPF   
Sbjct: 184 DGMFPSPYINSVIHPVYSSKGGRLLDPMAG------------NGRRNGNMSADAVPFQLN 227

BLAST of Carg10660 vs. ExPASy TrEMBL
Match: A0A5N6R9D7 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013735 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.3e-41
Identity = 102/209 (48.80%), Postives = 132/209 (63.16%), Query Frame = 0

Query: 14  LAREQRMSNGTRMEDQFRGRKIFVGGLSAELTEDDFKSYFEKFGRVTDVVVMRDSVTKRP 73
           L++     NG   ++QFR +KIFVGGLSA LTE++FK+YF++FGRVTDVVVM DS T RP
Sbjct: 101 LSKSSSTDNG---DNQFRTKKIFVGGLSASLTEEEFKNYFKRFGRVTDVVVMHDSTTHRP 160

Query: 74  RGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSESNVLP- 133
           RGFGFITFDS +SV++V+QN+FHELNGR VEVKRA+PK+ N        + +      P 
Sbjct: 161 RGFGFITFDSEESVENVMQNSFHELNGRLVEVKRAVPKEVNNGSDSGFNTRIEGGRGSPG 220

Query: 134 SYPYYSCGYTVYPGFTPFPPY-GPGFGLYGSDPYGNWFSPSFG---------PMASPAAW 193
           S+P YS  Y + PG+ PFP + G G  LYG+  Y  W+ PS G         P+A    W
Sbjct: 221 SFPPYSLRYWILPGYVPFPGFSGGGGSLYGASMYSGWY-PSGGSGGVGSVVAPLAPRNPW 280

Query: 194 YAPNFF--GMFPPPHKDSLVYPTYSSNGL 210
           Y P     G FP P   + +YP Y + G+
Sbjct: 281 YGPRVIGAGAFPLPPGSASIYPAYFTGGV 305

BLAST of Carg10660 vs. TAIR 10
Match: AT1G58470.1 (RNA-binding protein 1 )

HSP 1 Score: 130.6 bits (327), Expect = 1.8e-30
Identity = 91/213 (42.72%), Postives = 119/213 (55.87%), Query Frame = 0

Query: 18  QRMSNGTRMEDQ----FRGRKIFVGGLSAELTEDDFKSYFEKFGRVTDVVVMRDSVTKRP 77
           Q+M+ G R         R +KIFVGGLS+  TE++FKSYFE+FGR TDVVVM D VT RP
Sbjct: 101 QQMNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRP 160

Query: 78  RGFGFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKG--NYNGGHISKSPLSESNVL 137
           RGFGF+T+DS  SV+ V+Q+NFHEL+ +RVEVKRAIPK+G  + NG  ++  P   S   
Sbjct: 161 RGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKEGIQSNNGNAVNIPPSYSSFQA 220

Query: 138 PSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSD-PYGNWFSPSFGPMASPAAWYAPNFFGM 197
             Y     GY +   F P P +G    +     PYG  F+     ++       P  F  
Sbjct: 221 TPYVPEQNGYGMVLQFPP-PVFGYHHNVQAVQYPYGYQFTAQVANVSWNNPIMQPTGFYC 280

Query: 198 FP----PPHKDSLVYPTYSSNGL---STPVAGY 217
            P    PP  ++L Y  Y  NG     T ++GY
Sbjct: 281 APPHPTPPPTNNLGYIQY-MNGFDLSGTNISGY 311

BLAST of Carg10660 vs. TAIR 10
Match: AT5G55550.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 122.9 bits (307), Expect = 3.7e-28
Identity = 73/146 (50.00%), Postives = 91/146 (62.33%), Query Frame = 0

Query: 31  RGRKIFVGGLSAELTEDDFKSYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSV 90
           R +KIFVGGL + +TE++FK+YF++FG + DVVVM D  T+RPRGFGFITFDS  +VD V
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167

Query: 91  LQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSE-SNVLPSYPYYSCGYTVYPGFTP 150
           L   FHELNG+ VEVKRA+PK+          SP+S   + L S   Y  G    P  + 
Sbjct: 168 LHKTFHELNGKLVEVKRAVPKE---------ISPVSNIRSPLASGVNYGGGSNRMPANSY 227

Query: 151 FPPYGPGFGLYGS-DPYGNWFSPSFG 175
           F  + PG G Y S  P G  FSP  G
Sbjct: 228 FNNFAPGPGFYNSLGPVGRRFSPVIG 244

BLAST of Carg10660 vs. TAIR 10
Match: AT5G55550.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 122.9 bits (307), Expect = 3.7e-28
Identity = 73/146 (50.00%), Postives = 91/146 (62.33%), Query Frame = 0

Query: 31  RGRKIFVGGLSAELTEDDFKSYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSV 90
           R +KIFVGGL + +TE++FK+YF++FG + DVVVM D  T+RPRGFGFITFDS  +VD V
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167

Query: 91  LQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSE-SNVLPSYPYYSCGYTVYPGFTP 150
           L   FHELNG+ VEVKRA+PK+          SP+S   + L S   Y  G    P  + 
Sbjct: 168 LHKTFHELNGKLVEVKRAVPKE---------ISPVSNIRSPLASGVNYGGGSNRMPANSY 227

Query: 151 FPPYGPGFGLYGS-DPYGNWFSPSFG 175
           F  + PG G Y S  P G  FSP  G
Sbjct: 228 FNNFAPGPGFYNSLGPVGRRFSPVIG 244

BLAST of Carg10660 vs. TAIR 10
Match: AT5G55550.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 122.9 bits (307), Expect = 3.7e-28
Identity = 73/146 (50.00%), Postives = 91/146 (62.33%), Query Frame = 0

Query: 31  RGRKIFVGGLSAELTEDDFKSYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSV 90
           R +KIFVGGL + +TE++FK+YF++FG + DVVVM D  T+RPRGFGFITFDS  +VD V
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167

Query: 91  LQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSE-SNVLPSYPYYSCGYTVYPGFTP 150
           L   FHELNG+ VEVKRA+PK+          SP+S   + L S   Y  G    P  + 
Sbjct: 168 LHKTFHELNGKLVEVKRAVPKE---------ISPVSNIRSPLASGVNYGGGSNRMPANSY 227

Query: 151 FPPYGPGFGLYGS-DPYGNWFSPSFG 175
           F  + PG G Y S  P G  FSP  G
Sbjct: 228 FNNFAPGPGFYNSLGPVGRRFSPVIG 244

BLAST of Carg10660 vs. TAIR 10
Match: AT5G55550.4 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 122.9 bits (307), Expect = 3.7e-28
Identity = 73/146 (50.00%), Postives = 91/146 (62.33%), Query Frame = 0

Query: 31  RGRKIFVGGLSAELTEDDFKSYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSVDSV 90
           R +KIFVGGL + +TE++FK+YF++FG + DVVVM D  T+RPRGFGFITFDS  +VD V
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167

Query: 91  LQNNFHELNGRRVEVKRAIPKKGNYNGGHISKSPLSE-SNVLPSYPYYSCGYTVYPGFTP 150
           L   FHELNG+ VEVKRA+PK+          SP+S   + L S   Y  G    P  + 
Sbjct: 168 LHKTFHELNGKLVEVKRAVPKE---------ISPVSNIRSPLASGVNYGGGSNRMPANSY 227

Query: 151 FPPYGPGFGLYGS-DPYGNWFSPSFG 175
           F  + PG G Y S  P G  FSP  G
Sbjct: 228 FNNFAPGPGFYNSLGPVGRRFSPVIG 244

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7037746.12.0e-140100.00RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022982410.15.0e-12897.82RNA-binding protein 1-like [Cucurbita maxima][more]
XP_023524364.16.6e-12897.82RNA-binding protein 1-like [Cucurbita pepo subsp. pepo][more]
XP_022940975.18.6e-12898.25RNA-binding protein 1-like [Cucurbita moschata][more]
KAG6608405.11.7e-112100.00RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
Q9C6522.5e-2942.72RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1[more]
Q8W0344.1e-2445.71Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP... [more]
Q9JII54.0e-1938.15DAZ-associated protein 1 OS=Mus musculus OX=10090 GN=Dazap1 PE=1 SV=2[more]
Q96EP55.2e-1937.57DAZ-associated protein 1 OS=Homo sapiens OX=9606 GN=DAZAP1 PE=1 SV=1[more]
P226265.2e-1943.59Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens OX=9606 GN=HNRNPA... [more]
Match NameE-valueIdentityDescription
A0A6J1J2K52.4e-12897.82RNA-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481242 PE=4 SV=1[more]
A0A6J1FS874.2e-12898.25RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111446397 PE=4 SV... [more]
A0A0A0L5638.0e-6357.68RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G644730 PE=4 SV... [more]
A0A6J1C7241.0e-5454.73RNA-binding protein 1-like OS=Momordica charantia OX=3673 GN=LOC111008498 PE=4 S... [more]
A0A5N6R9D71.3e-4148.80Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013735 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G58470.11.8e-3042.72RNA-binding protein 1 [more]
AT5G55550.13.7e-2850.00RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G55550.33.7e-2850.00RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G55550.23.7e-2850.00RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G55550.43.7e-2850.00RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 34..106
e-value: 1.8E-25
score: 100.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 35..103
e-value: 4.2E-17
score: 61.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 33..110
score: 18.717335
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 8..127
e-value: 1.3E-27
score: 98.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 219..248
NoneNo IPR availablePANTHERPTHR48032RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6coord: 21..207
NoneNo IPR availablePANTHERPTHR48032:SF12NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 21..207
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 31..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10660-RACarg10660-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding