Carg10659 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10659
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr01: 12085487 .. 12085999 (+)
RNA-Seq ExpressionCarg10659
SyntenyCarg10659
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGTTCGAGTTCGAGTTCTCATCCACTGGACTTTGATTTCGAACTCCTTCAAACGAGGACGAACGTGCCGTTCTCTTGGGAGGCCAAGCCGGGGGTTCCGAAGCTACAATCGAGTTCCAGCCCTAACGTAAGCACGTTCGAGATATCAGCGTTGAAATTGCCTTCGCCGCCGTACCGATCGGAGAGTGCTAGGCTTCCCGATGACTACGGTGAGGCGATCCCCTGTTCTTCTCCGCGAGCGAAGAGTGCGAGGATGGCTAAGGAACATTTGTGGCTTCAAGCTTATTCCGACGACTTTGGATCGTCTTTTGGTTTCGGGTGCTGTAAACGGGATGGTTTGAAGGAGACAGATCCTTTTGTTGAAGCCTATAAGAAATGCACAAACGGCCCTTCGAAGAACCGTCGGCCAATCGGCGGCGGTTCTGCAACAAATGGAGTTAAACGTCCTGGTATTAGAAGAAGATTACTTTTTTCACTTTCACGGAAGTGCTGCGCTTCATCCCCGTGA

mRNA sequence

ATGGCGAGTTCGAGTTCGAGTTCTCATCCACTGGACTTTGATTTCGAACTCCTTCAAACGAGGACGAACGTGCCGTTCTCTTGGGAGGCCAAGCCGGGGGTTCCGAAGCTACAATCGAGTTCCAGCCCTAACGTAAGCACGTTCGAGATATCAGCGTTGAAATTGCCTTCGCCGCCGTACCGATCGGAGAGTGCTAGGCTTCCCGATGACTACGGTGAGGCGATCCCCTGTTCTTCTCCGCGAGCGAAGAGTGCGAGGATGGCTAAGGAACATTTGTGGCTTCAAGCTTATTCCGACGACTTTGGATCGTCTTTTGGTTTCGGGTGCTGTAAACGGGATGGTTTGAAGGAGACAGATCCTTTTGTTGAAGCCTATAAGAAATGCACAAACGGCCCTTCGAAGAACCGTCGGCCAATCGGCGGCGGTTCTGCAACAAATGGAGTTAAACGTCCTGGTATTAGAAGAAGATTACTTTTTTCACTTTCACGGAAGTGCTGCGCTTCATCCCCGTGA

Coding sequence (CDS)

ATGGCGAGTTCGAGTTCGAGTTCTCATCCACTGGACTTTGATTTCGAACTCCTTCAAACGAGGACGAACGTGCCGTTCTCTTGGGAGGCCAAGCCGGGGGTTCCGAAGCTACAATCGAGTTCCAGCCCTAACGTAAGCACGTTCGAGATATCAGCGTTGAAATTGCCTTCGCCGCCGTACCGATCGGAGAGTGCTAGGCTTCCCGATGACTACGGTGAGGCGATCCCCTGTTCTTCTCCGCGAGCGAAGAGTGCGAGGATGGCTAAGGAACATTTGTGGCTTCAAGCTTATTCCGACGACTTTGGATCGTCTTTTGGTTTCGGGTGCTGTAAACGGGATGGTTTGAAGGAGACAGATCCTTTTGTTGAAGCCTATAAGAAATGCACAAACGGCCCTTCGAAGAACCGTCGGCCAATCGGCGGCGGTTCTGCAACAAATGGAGTTAAACGTCCTGGTATTAGAAGAAGATTACTTTTTTCACTTTCACGGAAGTGCTGCGCTTCATCCCCGTGA

Protein sequence

MASSSSSSHPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFEISALKLPSPPYRSESARLPDDYGEAIPCSSPRAKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLKETDPFVEAYKKCTNGPSKNRRPIGGGSATNGVKRPGIRRRLLFSLSRKCCASSP
Homology
BLAST of Carg10659 vs. NCBI nr
Match: KAG7037747.1 (hypothetical protein SDJN02_01378, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 349.4 bits (895), Expect = 1.8e-92
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0

Query: 1   MASSSSSSHPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFEISALKLPSPPY 60
           MASSSSSSHPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFEISALKLPSPPY
Sbjct: 1   MASSSSSSHPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFEISALKLPSPPY 60

Query: 61  RSESARLPDDYGEAIPCSSPRAKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLKETDP 120
           RSESARLPDDYGEAIPCSSPRAKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLKETDP
Sbjct: 61  RSESARLPDDYGEAIPCSSPRAKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLKETDP 120

Query: 121 FVEAYKKCTNGPSKNRRPIGGGSATNGVKRPGIRRRLLFSLSRKCCASSP 171
           FVEAYKKCTNGPSKNRRPIGGGSATNGVKRPGIRRRLLFSLSRKCCASSP
Sbjct: 121 FVEAYKKCTNGPSKNRRPIGGGSATNGVKRPGIRRRLLFSLSRKCCASSP 170

BLAST of Carg10659 vs. NCBI nr
Match: KAG6608406.1 (hypothetical protein SDJN03_01748, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 346.7 bits (888), Expect = 1.2e-91
Identity = 169/170 (99.41%), Postives = 169/170 (99.41%), Query Frame = 0

Query: 1   MASSSSSSHPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFEISALKLPSPPY 60
           MASSSSSSHPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFE SALKLPSPPY
Sbjct: 1   MASSSSSSHPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFERSALKLPSPPY 60

Query: 61  RSESARLPDDYGEAIPCSSPRAKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLKETDP 120
           RSESARLPDDYGEAIPCSSPRAKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLKETDP
Sbjct: 61  RSESARLPDDYGEAIPCSSPRAKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLKETDP 120

Query: 121 FVEAYKKCTNGPSKNRRPIGGGSATNGVKRPGIRRRLLFSLSRKCCASSP 171
           FVEAYKKCTNGPSKNRRPIGGGSATNGVKRPGIRRRLLFSLSRKCCASSP
Sbjct: 121 FVEAYKKCTNGPSKNRRPIGGGSATNGVKRPGIRRRLLFSLSRKCCASSP 170

BLAST of Carg10659 vs. NCBI nr
Match: KAA0064469.1 (hypothetical protein E6C27_scaffold255G001840 [Cucumis melo var. makuwa] >TYK20119.1 hypothetical protein E5676_scaffold134G002440 [Cucumis melo var. makuwa])

HSP 1 Score: 209.1 bits (531), Expect = 2.9e-50
Identity = 109/149 (73.15%), Postives = 116/149 (77.85%), Query Frame = 0

Query: 23  NVPFSWEAKPGVPKLQSSSSPNVSTFEISALKLPSPPYRSESARLPDDYGEAIPCSSP-- 82
           NVPFSWEAKPGVPK QS  SP+ S FE S LKLPSPP RSESARL  DY   I  S P  
Sbjct: 2   NVPFSWEAKPGVPKPQSQPSPSASLFETSMLKLPSPPCRSESARLSGDYSGLITYSPPRC 61

Query: 83  RAKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLKETDPFVEAYKKCTNGPSKNRRPIG 142
           RA+SARMAK+ LWL+AYSD   SSFGFGCCK D  K+TDPFVEAYKKCTN  S + R I 
Sbjct: 62  RAESARMAKDFLWLEAYSDGSASSFGFGCCKSDDSKKTDPFVEAYKKCTNSRSMSGRGIT 121

Query: 143 GGSATNGVKRPGIRRRLLFSLSRKCCASS 170
           GGSATNGVKRP I RR+LFSLSRKCCASS
Sbjct: 122 GGSATNGVKRPNIIRRVLFSLSRKCCASS 150

BLAST of Carg10659 vs. NCBI nr
Match: XP_004141298.1 (uncharacterized protein LOC101203728 [Cucumis sativus] >KAE8649894.1 hypothetical protein Csa_012140 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 9.3e-49
Identity = 110/165 (66.67%), Postives = 120/165 (72.73%), Query Frame = 0

Query: 6   SSSHPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFEISA--LKLPSPPYRSE 65
           +SS P++ DFE L T+TNVPFSWEAKPGVPK QS  SP  S FEI A  LKLPSPP RSE
Sbjct: 2   ASSRPIEIDFEFLPTKTNVPFSWEAKPGVPKPQSQPSPTASLFEIEATMLKLPSPPCRSE 61

Query: 66  SARLPDDYGEAIPCSSP--RAKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLKETDPF 125
           SARL  DY   I  S P  RA+SARMAK+ LWL+AYSD   SSFGFGCCK D  K+TDPF
Sbjct: 62  SARLSGDYSGLITYSPPRCRAESARMAKDFLWLEAYSDGSASSFGFGCCKSDDSKKTDPF 121

Query: 126 VEAYKKCTNGPSKNRRPIGGGSATNGVKRPGIRRRLLFSLSRKCC 167
           VEAYKKC     +N R I G SATNG KRP I RR+LFSLSR  C
Sbjct: 122 VEAYKKC-----RNSRSINGASATNGAKRPNIIRRVLFSLSRFWC 161

BLAST of Carg10659 vs. NCBI nr
Match: KAG5230775.1 (Stimulated by retinoic acid protein [Salix suchowensis])

HSP 1 Score: 65.5 bits (158), Expect = 5.2e-07
Identity = 53/150 (35.33%), Postives = 70/150 (46.67%), Query Frame = 0

Query: 16  ELLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFEISALKLPSPPYRSESARLPDDYGEAI 75
           +++Q++ NVPFSWE KPGVPK+         T+    LKLP PP  S+  R P D     
Sbjct: 5   DVVQSKANVPFSWEQKPGVPKVTHQEVRPADTWHF-RLKLPPPPRASKCTRFPSDDN--- 64

Query: 76  PCSSPRAKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLK-ETDPFVEAYKKCTNGPSK 135
                             LQA S    SSF      + G++ + DPF+ AYKKCT  P  
Sbjct: 65  ------------------LQALSTS-SSSF------KKGIRIQEDPFLRAYKKCTRSPI- 123

Query: 136 NRRPIGGGSATNGVKRPGIRRRLLFSLSRK 165
           N R    G A  G+ +  +R+    SLS K
Sbjct: 125 NGRLTRDGKADRGMPKT-VRKNAGSSLSCK 123

BLAST of Carg10659 vs. ExPASy TrEMBL
Match: A0A0A0KZZ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644720 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 2.2e-51
Identity = 114/168 (67.86%), Postives = 124/168 (73.81%), Query Frame = 0

Query: 6   SSSHPLDFDFELLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFEISA--LKLPSPPYRSE 65
           +SS P++ DFE L T+TNVPFSWEAKPGVPK QS  SP  S FEI A  LKLPSPP RSE
Sbjct: 2   ASSRPIEIDFEFLPTKTNVPFSWEAKPGVPKPQSQPSPTASLFEIEATMLKLPSPPCRSE 61

Query: 66  SARLPDDYGEAIPCSSP--RAKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLKETDPF 125
           SARL  DY   I  S P  RA+SARMAK+ LWL+AYSD   SSFGFGCCK D  K+TDPF
Sbjct: 62  SARLSGDYSGLITYSPPRCRAESARMAKDFLWLEAYSDGSASSFGFGCCKSDDSKKTDPF 121

Query: 126 VEAYKKCTNGPSKNRRPIGGGSATNGVKRPGIRRRLLFSLSRKCCASS 170
           VEAYKKC     +N R I G SATNG KRP I RR+LFSLSRKC ASS
Sbjct: 122 VEAYKKC-----RNSRSINGASATNGAKRPNIIRRVLFSLSRKCFASS 164

BLAST of Carg10659 vs. ExPASy TrEMBL
Match: A0A5D3D9E3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002440 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.4e-50
Identity = 109/149 (73.15%), Postives = 116/149 (77.85%), Query Frame = 0

Query: 23  NVPFSWEAKPGVPKLQSSSSPNVSTFEISALKLPSPPYRSESARLPDDYGEAIPCSSP-- 82
           NVPFSWEAKPGVPK QS  SP+ S FE S LKLPSPP RSESARL  DY   I  S P  
Sbjct: 2   NVPFSWEAKPGVPKPQSQPSPSASLFETSMLKLPSPPCRSESARLSGDYSGLITYSPPRC 61

Query: 83  RAKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLKETDPFVEAYKKCTNGPSKNRRPIG 142
           RA+SARMAK+ LWL+AYSD   SSFGFGCCK D  K+TDPFVEAYKKCTN  S + R I 
Sbjct: 62  RAESARMAKDFLWLEAYSDGSASSFGFGCCKSDDSKKTDPFVEAYKKCTNSRSMSGRGIT 121

Query: 143 GGSATNGVKRPGIRRRLLFSLSRKCCASS 170
           GGSATNGVKRP I RR+LFSLSRKCCASS
Sbjct: 122 GGSATNGVKRPNIIRRVLFSLSRKCCASS 150

BLAST of Carg10659 vs. ExPASy TrEMBL
Match: A0A067LAQ4 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15992 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-05
Identity = 46/149 (30.87%), Postives = 68/149 (45.64%), Query Frame = 0

Query: 20  TRTNVPFSWEAKPGVPKLQSSSSPNVSTFEISALKLPSPPYRSESARLPDDYGEAIPCSS 79
           ++ NVPFSWE KPGV K+ +  + N    +I  +KLP PP   ES R+   +  +IP   
Sbjct: 9   SKGNVPFSWEKKPGVSKVNAMINNNQEQDQI-VVKLPPPPCPIESPRV-SAHEISIPLPP 68

Query: 80  PRAKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLKETDPFVEAYKKCTNGPSKNRRPI 139
              +    +    W                         DPF+ AYK+CT   ++++  +
Sbjct: 69  CTFQPPSRSSSRKW------------------------DDPFLAAYKECTKSSTRSKAKV 128

Query: 140 GGGSATNGVKRPGIRRRLLFSLSRKCCAS 169
            GGSA  G  R G+R+  +F LS K   S
Sbjct: 129 AGGSA--GFSRSGLRKG-MFKLSCKSSCS 128

BLAST of Carg10659 vs. ExPASy TrEMBL
Match: A0A6J1ADZ8 (uncharacterized protein LOC110417148 OS=Herrania umbratica OX=108875 GN=LOC110417148 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-05
Identity = 51/150 (34.00%), Postives = 68/150 (45.33%), Query Frame = 0

Query: 17  LLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFEISALKLPSPPYRSESARLPDDYGEAIP 76
           ++ ++ NVPFSWE KPGV KL S        F     KLPSPPY  ESAR+   +G  IP
Sbjct: 5   IVHSQGNVPFSWENKPGVCKLTSQEGSKEDYF---LQKLPSPPYPPESARIL-IHGVKIP 64

Query: 77  CSSPRAKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLKETDPFVEAYKKCTNGPSKNR 136
              P               A+   F +S      +R   K  DPF+ AYK+CT   SK +
Sbjct: 65  --PPPC-------------AFQHPFKTS------RRGLRKSDDPFLAAYKECTKSTSKGK 122

Query: 137 RPIGGGSATNGVKRPGIRRRLL-FSLSRKC 166
                G +       G+++ +  FS  R C
Sbjct: 125 LAKSDGGS-------GLKKGMFNFSCKRSC 122

BLAST of Carg10659 vs. ExPASy TrEMBL
Match: A0A5N5K708 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_020423 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-05
Identity = 52/151 (34.44%), Postives = 68/151 (45.03%), Query Frame = 0

Query: 16  ELLQTRTNVPFSWEAKPGVPKLQSSSSPNVSTFEISALKLPSPPYR-SESARLPDDYGEA 75
           +++Q++ NVPFSWE KPGV K+       V T+    LKLP PP R S+S R P D    
Sbjct: 5   DVVQSKANVPFSWEQKPGVSKVTHQEVRPVDTWHF-RLKLPPPPPRASKSTRFPSDDNLQ 64

Query: 76  IPCSSPRAKSARMAKEHLWLQAYSDDFGSSFGFGCCKRDGLK-ETDPFVEAYKKCTNGPS 135
           +                  L A S  F          + G++ + DPF  AYKKCT  P 
Sbjct: 65  L------------------LSAPSSSF----------KKGIRIQEDPFWRAYKKCTRSPI 124

Query: 136 KNRRPIGGGSATNGVKRPGIRRRLLFSLSRK 165
            N R    G A  G +   +R+    SLS K
Sbjct: 125 -NGRLTRDGKADRG-RPKTVRKNAGSSLSCK 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7037747.11.8e-92100.00hypothetical protein SDJN02_01378, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6608406.11.2e-9199.41hypothetical protein SDJN03_01748, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0064469.12.9e-5073.15hypothetical protein E6C27_scaffold255G001840 [Cucumis melo var. makuwa] >TYK201... [more]
XP_004141298.19.3e-4966.67uncharacterized protein LOC101203728 [Cucumis sativus] >KAE8649894.1 hypothetica... [more]
KAG5230775.15.2e-0735.33Stimulated by retinoic acid protein [Salix suchowensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KZZ92.2e-5167.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644720 PE=4 SV=1[more]
A0A5D3D9E31.4e-5073.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A067LAQ41.4e-0530.87Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_15992 PE=4 SV=1[more]
A0A6J1ADZ81.8e-0534.00uncharacterized protein LOC110417148 OS=Herrania umbratica OX=108875 GN=LOC11041... [more]
A0A5N5K7084.0e-0534.44Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_020423 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33696:SF12BNAA08G25910D PROTEINcoord: 18..168
NoneNo IPR availablePANTHERPTHR33696T22J18.15-RELATEDcoord: 18..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10659-RACarg10659-RAmRNA