Carg10647 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10647
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	LIM domain-containing protein WLIM1-like
Location	Carg_Chr01: 12146568 .. 12147413 (-)
RNA-Seq Expression	Carg10647
Synteny	Carg10647

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTCGCAGGAACCACCCAGAAGTGCATGGCTTGCGACAAGACTGTCTATTTGGTCGACAAGCTCACTGCCGACAATCGTGTCTTCCACAAAGCTTGCTTCCGCTGCCACCACTGCAAAGGAACCCTCAAGGTAATCAATCAAACCTCGTTCATTTCAACTCTCATCAATCCATGAACTTAATTCTTAATTGGGCTGCTACATTCATTTCGATTTCTTGAAATGGGCTCTCAGATCAGCTCAATTTTAGTGGGCTATGGATGAATTTGAATTCAACGATTCACTGATTAACGGATCTGATTTGCAGTTAAGCAATTACAATTCGTTTGAAGGGGTTCTGTATTGCCGCCCACACTTCGATCAGCTCTTTAAAAGAACAGGAAGCTTAGCCAAAAGCTTCGAAGGTATTAAGAAAAGAAACTAAGTTGGTATTCCATCGCTAATCTCAAACCAACATTCGTTCTATCTTGTGATTTTAGGAACACCGAAGATTGGGAAGAAGCCAGCTGATTCTGAGGTGCACCTAATTAATTACTCTGTTTTACTCTGTTTTACTCTGTTATTGTAAGTGATTACTGAACATCATTTGACAGAAACCAGCGGCGACCAGGGTTGCAAGCATGTTTGTCGGCACCAAAGACAAGTGCCTTGGCTGTAACAACACTGTTTATCCGACCGAGAAGGTAAATGTGAGCTGAAATGGACGAATAATTGTGGATTCAGAACACATCATTTGAAGCTTTGTTTCTCAGGTTTTAGTGGATGGAACCTCGTACCACAAGAGCTGCTTCAAGTGCTGCCATGGCGGATGTACAATCAGCCCATCAAATTACATCGCACACG

mRNA sequence

ATGGCCTTCGCAGGAACCACCCAGAAGTGCATGGCTTGCGACAAGACTGTCTATTTGGTCGACAAGCTCACTGCCGACAATCGTGTCTTCCACAAAGCTTGCTTCCGCTGCCACCACTGCAAAGGAACCCTCAAGTTAAGCAATTACAATTCGTTTGAAGGGGTTCTGTATTGCCGCCCACACTTCGATCAGCTCTTTAAAAGAACAGGAAGCTTAGCCAAAAGCTTCGAAGGAACACCGAAGATTGGGAAGAAGCCAGCTGATTCTGAGAAACCAGCGGCGACCAGGGTTGCAAGCATGTTTGTCGGCACCAAAGACAAGTGCCTTGGCTGTAACAACACTGTTTATCCGACCGAGAAGGTAAATGTGAGCTGAAATGGACGAATAATTGTGGATTCAGAACACATCATTTGAAGCTTTGTTTCTCAGGTTTTAGTGGATGGAACCTCGTACCACAAGAGCTGCTTCAAGTGCTGCCATGGCGGATGTACAATCAGCCCATCAAATTACATCGCACACG

Coding sequence (CDS)

ATGGCCTTCGCAGGAACCACCCAGAAGTGCATGGCTTGCGACAAGACTGTCTATTTGGTCGACAAGCTCACTGCCGACAATCGTGTCTTCCACAAAGCTTGCTTCCGCTGCCACCACTGCAAAGGAACCCTCAAGTTAAGCAATTACAATTCGTTTGAAGGGGTTCTGTATTGCCGCCCACACTTCGATCAGCTCTTTAAAAGAACAGGAAGCTTAGCCAAAAGCTTCGAAGGAACACCGAAGATTGGGAAGAAGCCAGCTGATTCTGAGAAACCAGCGGCGACCAGGGTTGCAAGCATGTTTGTCGGCACCAAAGACAAGTGCCTTGGCTGTAACAACACTGTTTATCCGACCGAGAAGGTAAATGTGAGCTGA

Protein sequence

MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEKVNVS

Homology

[Close]

BLAST of Carg10647 vs. NCBI nr
Match: KAG7037759.1 (LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265.8 bits (678), Expect = 1.9e-67
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK
Sbjct: 61  HFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120

Query: 121 VNVS 125
           VNVS
Sbjct: 121 VNVS 124

[Close]

BLAST of Carg10647 vs. NCBI nr
Match: XP_022940134.1 (LIM domain-containing protein WLIM1-like [Cucurbita moschata] >XP_023524403.1 LIM domain-containing protein WLIM1-like [Cucurbita pepo subsp. pepo] >KAG6608422.1 LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 260.8 bits (665), Expect = 6.1e-66
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK
Sbjct: 61  HFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120

Query: 121 VNV 124
           V V
Sbjct: 121 VLV 123

[Close]

BLAST of Carg10647 vs. NCBI nr
Match: XP_022982515.1 (LIM domain-containing protein WLIM1-like [Cucurbita maxima])

HSP 1 Score: 258.5 bits (659), Expect = 3.0e-65
Identity = 121/123 (98.37%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HFDQLFKRTGSL KSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK
Sbjct: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120

Query: 121 VNV 124
           V V
Sbjct: 121 VLV 123

[Close]

BLAST of Carg10647 vs. NCBI nr
Match: KAG6591426.1 (LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248.1 bits (632), Expect = 4.1e-62
Identity = 116/126 (92.06%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLAKSFEGTPKIGK--KPADSEKPAATRVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSL KSFEGTPKIGK  KPADSE+P AT+VASMFVGTKDKCLGC NTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVNVS 125
           EKV+V+
Sbjct: 121 EKVSVN 126

[Close]

BLAST of Carg10647 vs. NCBI nr
Match: XP_022936105.1 (LIM domain-containing protein WLIM1 [Cucurbita moschata])

HSP 1 Score: 248.1 bits (632), Expect = 4.1e-62
Identity = 116/126 (92.06%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLAKSFEGTPKIGK--KPADSEKPAATRVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSL KSFEGTPKIGK  KPADSE+P AT+VASMFVGTKDKCLGC NTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVNVS 125
           EKV+V+
Sbjct: 121 EKVSVN 126

[Close]

BLAST of Carg10647 vs. ExPASy Swiss-Prot
Match: Q94JX5 (LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=1 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.7e-58
Identity = 103/126 (81.75%), Postives = 116/126 (92.06%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLAKSFEGTPKIGK--KPADSEKPAATRVASMFVGTKDKCLGCNNTVYPT 120
           HFDQ FKRTGSL KSFEGTPKIGK  +P + E+PA T+V++MF GT++KC+GC+ TVYP 
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 121 EKVNVS 125
           EKV+V+
Sbjct: 121 EKVSVN 126

[Close]

BLAST of Carg10647 vs. ExPASy Swiss-Prot
Match: P29675 (Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.0e-43
Identity = 80/123 (65.04%), Postives = 95/123 (77.24%), Query Frame = 0


Query: 2   AFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPH 61
           +F GTTQKC  C+KTVYLVDKL A+ RV+HKACFRCHHC  TLKLSN+NSF+GV+YCR H
Sbjct: 3   SFTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHH 62

Query: 62  FDQLFKRTGSLAKSFEGTPKI-GKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 121
           FDQLFKRTGSL KSF+GTPK   ++    E  +A R++S F GT+DKC  C   VYP E+
Sbjct: 63  FDQLFKRTGSLEKSFDGTPKFKPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIER 122

Query: 122 VNV 124
           V V
Sbjct: 123 VKV 125

[Close]

BLAST of Carg10647 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.8e-36
Identity = 70/124 (56.45%), Postives = 88/124 (70.97%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   +HKACF+C HCK  L+LSNY+S EGV+YCRP
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFDQLFKRTGSLAKSFEGTPK-IGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTE 120
           HF+QLFK +GS +K+F+   K +  KP        +R+A MF GT+DKC  C  TVYP E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVNV 124
           KV V
Sbjct: 121 KVTV 124

[Close]

BLAST of Carg10647 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.4e-35
Identity = 65/123 (52.85%), Postives = 88/123 (71.54%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT  KC ACDKTVY++D LT +   +HK+CFRC HCKGTL +SNY+S +GVLYC+P
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HF+QLFK +G+ +K+F+      +KP D      ++++S F GT+DKC  C  TVYP EK
Sbjct: 61  HFEQLFKESGNYSKNFQAGKT--EKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEK 120

Query: 121 VNV 124
           V +
Sbjct: 121 VTM 121

[Close]

BLAST of Carg10647 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.8e-35
Identity = 65/127 (51.18%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT  KC  CDKTVY+VD L+ +   +HK+CFRC HCKGTL++SNY+S +GVLYC+ 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATR----VASMFVGTKDKCLGCNNTVY 120
           HF+QLFK +G+ +K+F+        P  +EKP  TR    ++S+F GT+DKC  C  TVY
Sbjct: 61  HFEQLFKESGNFSKNFQ--------PGKTEKPELTRTPSKISSIFCGTQDKCAACEKTVY 119

Query: 121 PTEKVNV 124
           P EK+ +
Sbjct: 121 PLEKIQM 119

[Close]

BLAST of Carg10647 vs. ExPASy TrEMBL
Match: A0A6J1FJ62 (LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111445852 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.0e-66
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK
Sbjct: 61  HFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120

Query: 121 VNV 124
           V V
Sbjct: 121 VLV 123

[Close]

BLAST of Carg10647 vs. ExPASy TrEMBL
Match: A0A6J1J2W3 (LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC111481309 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.5e-65
Identity = 121/123 (98.37%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HFDQLFKRTGSL KSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK
Sbjct: 61  HFDQLFKRTGSLNKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120

Query: 121 VNV 124
           V V
Sbjct: 121 VLV 123

[Close]

BLAST of Carg10647 vs. ExPASy TrEMBL
Match: A0A6J1IP16 (LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC111477270 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.0e-62
Identity = 116/126 (92.06%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 47  MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 106

Query: 61  HFDQLFKRTGSLAKSFEGTPKIGK--KPADSEKPAATRVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSL KSFEGTPKIGK  KPADSE+P AT+VASMFVGTKDKCLGC NTVYPT
Sbjct: 107 HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 166

Query: 121 EKVNVS 125
           EKV+V+
Sbjct: 167 EKVSVN 172

[Close]

BLAST of Carg10647 vs. ExPASy TrEMBL
Match: A0A6J1FCP1 (LIM domain-containing protein WLIM1 OS=Cucurbita moschata OX=3662 GN=LOC111442805 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.0e-62
Identity = 116/126 (92.06%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLAKSFEGTPKIGK--KPADSEKPAATRVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSL KSFEGTPKIGK  KPADSE+P AT+VASMFVGTKDKCLGC NTVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPADSERPTATKVASMFVGTKDKCLGCKNTVYPT 120

Query: 121 EKVNVS 125
           EKV+V+
Sbjct: 121 EKVSVN 126

[Close]

BLAST of Carg10647 vs. ExPASy TrEMBL
Match: A0A0A0L3T9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G643070 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 9.9e-62
Identity = 115/126 (91.27%), Postives = 119/126 (94.44%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHC GTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCNGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLAKSFEGTPKIGK--KPADSEKPAATRVASMFVGTKDKCLGCNNTVYPT 120
           HFDQLFKRTGSL KSFEGTPKIGK  KP DSEKP AT+VASMFVGTKDKCLGCN TVYPT
Sbjct: 61  HFDQLFKRTGSLDKSFEGTPKIGKPEKPGDSEKPTATKVASMFVGTKDKCLGCNKTVYPT 120

Query: 121 EKVNVS 125
           EKV+V+
Sbjct: 121 EKVSVN 126

[Close]

BLAST of Carg10647 vs. TAIR 10
Match: AT1G10200.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 226.5 bits (576), Expect = 1.2e-59
Identity = 103/126 (81.75%), Postives = 116/126 (92.06%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           MAFAGTTQKCMACDKTVYLVDKLTADNRV+HKACFRCHHCKGTLKLSNYNSFEGVLYCRP
Sbjct: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60

Query: 61  HFDQLFKRTGSLAKSFEGTPKIGK--KPADSEKPAATRVASMFVGTKDKCLGCNNTVYPT 120
           HFDQ FKRTGSL KSFEGTPKIGK  +P + E+PA T+V++MF GT++KC+GC+ TVYP 
Sbjct: 61  HFDQNFKRTGSLEKSFEGTPKIGKPDRPLEGERPAGTKVSNMFGGTREKCVGCDKTVYPI 120

Query: 121 EKVNVS 125
           EKV+V+
Sbjct: 121 EKVSVN 126

[Close]

BLAST of Carg10647 vs. TAIR 10
Match: AT2G39900.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-37
Identity = 70/124 (56.45%), Postives = 88/124 (70.97%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   +HKACF+C HCK  L+LSNY+S EGV+YCRP
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFDQLFKRTGSLAKSFEGTPK-IGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTE 120
           HF+QLFK +GS +K+F+   K +  KP        +R+A MF GT+DKC  C  TVYP E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVNV 124
           KV V
Sbjct: 121 KVTV 124

[Close]

BLAST of Carg10647 vs. TAIR 10
Match: AT2G45800.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 149.1 bits (375), Expect = 2.4e-36
Identity = 65/123 (52.85%), Postives = 88/123 (71.54%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT  KC ACDKTVY++D LT +   +HK+CFRC HCKGTL +SNY+S +GVLYC+P
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HF+QLFK +G+ +K+F+      +KP D      ++++S F GT+DKC  C  TVYP EK
Sbjct: 61  HFEQLFKESGNYSKNFQAGKT--EKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEK 120

Query: 121 VNV 124
           V +
Sbjct: 121 VTM 121

[Close]

BLAST of Carg10647 vs. TAIR 10
Match: AT1G01780.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 148.3 bits (373), Expect = 4.1e-36
Identity = 65/127 (51.18%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT  KC  CDKTVY+VD L+ +   +HK+CFRC HCKGTL++SNY+S +GVLYC+ 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATR----VASMFVGTKDKCLGCNNTVY 120
           HF+QLFK +G+ +K+F+        P  +EKP  TR    ++S+F GT+DKC  C  TVY
Sbjct: 61  HFEQLFKESGNFSKNFQ--------PGKTEKPELTRTPSKISSIFCGTQDKCAACEKTVY 119

Query: 121 PTEKVNV 124
           P EK+ +
Sbjct: 121 PLEKIQM 119

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BLAST of Carg10647 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 147.1 bits (370), Expect = 9.2e-36
Identity = 66/123 (53.66%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 1   MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRP 60
           M+F GT QKC AC+KTVY V+ L+AD   +HK+CF+C HCK  L+LS+Y+S EGVLYC+P
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFDQLFKRTGSLAKSFEGTPKIGKKPADSEKPAATRVASMFVGTKDKCLGCNNTVYPTEK 120
           HF+QLFK +GS  K+F+   K   K         +RVA  F GT++KC  C+ TVYP EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VNV 124
           V V
Sbjct: 121 VTV 123

The following BLAST results are available for this feature:

BLAST of Carg10647 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037759.1	1.9e-67	100.00	LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_022940134.1	6.1e-66	99.19	LIM domain-containing protein WLIM1-like [Cucurbita moschata] >XP_023524403.1 LI...	[more]
XP_022982515.1	3.0e-65	98.37	LIM domain-containing protein WLIM1-like [Cucurbita maxima]	[more]
KAG6591426.1	4.1e-62	92.06	LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_022936105.1	4.1e-62	92.06	LIM domain-containing protein WLIM1 [Cucurbita moschata]	[more]

BLAST of Carg10647 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JX5	1.7e-58	81.75	LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana OX=3702 GN=WLIM1 PE=...	[more]
P29675	2.0e-43	65.04	Pollen-specific protein SF3 OS=Helianthus annuus OX=4232 GN=SF3 PE=2 SV=1	[more]
O04193	1.8e-36	56.45	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
O80839	3.4e-35	52.85	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]
Q1ECF5	5.8e-35	51.18	LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P...	[more]

BLAST of Carg10647 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJ62	3.0e-66	99.19	LIM domain-containing protein WLIM1-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1J2W3	1.5e-65	98.37	LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1IP16	2.0e-62	92.06	LIM domain-containing protein WLIM1-like OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1FCP1	2.0e-62	92.06	LIM domain-containing protein WLIM1 OS=Cucurbita moschata OX=3662 GN=LOC11144280...	[more]
A0A0A0L3T9	9.9e-62	91.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G643070 PE=4 SV=1	[more]

BLAST of Carg10647 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10200.1	1.2e-59	81.75	GATA type zinc finger transcription factor family protein	[more]
AT2G39900.1	1.3e-37	56.45	GATA type zinc finger transcription factor family protein	[more]
AT2G45800.1	2.4e-36	52.85	GATA type zinc finger transcription factor family protein	[more]
AT1G01780.1	4.1e-36	51.18	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.1	9.2e-36	53.66	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 9..61 e-value: 8.1E-11 score: 51.9
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 10..64 e-value: 1.6E-10 score: 41.1
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.0879
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 4..74 e-value: 7.8E-20 score: 72.8
None	No IPR available	PANTHER	PTHR24206:SF92	GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN	coord: 1..123
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..123
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 6..68 e-value: 1.19264E-41 score: 130.277
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..76
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10647-RA	Carg10647-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding