Carg10638 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10638
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	LOB domain-containing protein
Location	Carg_Chr01: 12199842 .. 12200812 (+)
RNA-Seq Expression	Carg10638
Synteny	Carg10638

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCCTAACTCCAACGCCATTTCAGATTCTCTGTTGTTTTAAACGCCCTCTGCCTCCGCTTCCCAACGCTCCACCACCTCGCCTCTTCTCGACCACATTATCATTGCCTTTGCTTCCTTATAAGAATCGTGTGTGATTTTATTAACAAATCGGAGAATGAGTTGCAACGGTTGCAGAGTGCTTCGAAAGGGATGCAGTGAAGCTTGCGTTTTAAGGTCAAGTCTTCATTGGATCGACTCGCCGGAAGCTCAAGGCAACGCCACCTTGTTTCTTGCTAAATTCTTCGGCCGTAGTGATCTCTTGTCCTTCATCTCCGCCGTTCCTCATCATCAGAGATCCGGTACACATATTTTTATTTTTTATTTTTACTTCCGAAATGAACTCTTACATAACCCTGTTCTTGGTTTTTTGAAGCTCTGTTTCAGTCTCTGTTATTTGAAGCTTGCGGCCGTACGGTCAACCCGGTGAGTGGGGCCGTTGGGCTGTTGTCGAGCGGGAATTGGCATGTCTGTCAGGCGGCGGCGGAGACGGTTCTCAGGGGCGGAGTTCCCCGGGCAAACCTCGGAATCGAATTTTCTCGAAATCCCACGGCGGAGACAGAATCCTCTCTTAGTTTGAATACGGATGTTTGGACCAGCACCACTCAGAATATTCAATTTTACCCTTCTAGTCCGTTCGATTCCCGGCGACTTTCCGATCTCAGTCTTGCCACCGGCAAGGGAAAGACCCATCCATTGGAGAATCGACGCTCTCTCGATTCAGATGAGTCGGTGATGACGAGCTTTGGAAGCGCGGATAATAGCGACGGCGACCGGCGGAAAGAGAGGAAGCTTTTAAACTTATTCATCTGAAGAGAAAAAAACAAAGCGAGGAATTTTGTTTGAGATTAGTGGGGGGACGATAGTGGTGTAGAAGTGAAGACAGTGAATAATCCAATGAGTTTTAATAATCAGTTCGTCGGAATGGACCG

mRNA sequence

CTTTCCTAACTCCAACGCCATTTCAGATTCTCTGTTGTTTTAAACGCCCTCTGCCTCCGCTTCCCAACGCTCCACCACCTCGCCTCTTCTCGACCACATTATCATTGCCTTTGCTTCCTTATAAGAATCGTGTGTGATTTTATTAACAAATCGGAGAATGAGTTGCAACGGTTGCAGAGTGCTTCGAAAGGGATGCAGTGAAGCTTGCGTTTTAAGGTCAAGTCTTCATTGGATCGACTCGCCGGAAGCTCAAGGCAACGCCACCTTGTTTCTTGCTAAATTCTTCGGCCGTAGTGATCTCTTGTCCTTCATCTCCGCCGTTCCTCATCATCAGAGATCCGCTCTGTTTCAGTCTCTGTTATTTGAAGCTTGCGGCCGTACGGTCAACCCGGTGAGTGGGGCCGTTGGGCTGTTGTCGAGCGGGAATTGGCATGTCTGTCAGGCGGCGGCGGAGACGGTTCTCAGGGGCGGAGTTCCCCGGGCAAACCTCGGAATCGAATTTTCTCGAAATCCCACGGCGGAGACAGAATCCTCTCTTAGTTTGAATACGGATGTTTGGACCAGCACCACTCAGAATATTCAATTTTACCCTTCTAGTCCGTTCGATTCCCGGCGACTTTCCGATCTCAGTCTTGCCACCGGCAAGGGAAAGACCCATCCATTGGAGAATCGACGCTCTCTCGATTCAGATGAGTCGGTGATGACGAGCTTTGGAAGCGCGGATAATAGCGACGGCGACCGGCGGAAAGAGAGGAAGCTTTTAAACTTATTCATCTGAAGAGAAAAAAACAAAGCGAGGAATTTTGTTTGAGATTAGTGGGGGGACGATAGTGGTGTAGAAGTGAAGACAGTGAATAATCCAATGAGTTTTAATAATCAGTTCGTCGGAATGGACCG

Coding sequence (CDS)

ATGAGTTGCAACGGTTGCAGAGTGCTTCGAAAGGGATGCAGTGAAGCTTGCGTTTTAAGGTCAAGTCTTCATTGGATCGACTCGCCGGAAGCTCAAGGCAACGCCACCTTGTTTCTTGCTAAATTCTTCGGCCGTAGTGATCTCTTGTCCTTCATCTCCGCCGTTCCTCATCATCAGAGATCCGCTCTGTTTCAGTCTCTGTTATTTGAAGCTTGCGGCCGTACGGTCAACCCGGTGAGTGGGGCCGTTGGGCTGTTGTCGAGCGGGAATTGGCATGTCTGTCAGGCGGCGGCGGAGACGGTTCTCAGGGGCGGAGTTCCCCGGGCAAACCTCGGAATCGAATTTTCTCGAAATCCCACGGCGGAGACAGAATCCTCTCTTAGTTTGAATACGGATGTTTGGACCAGCACCACTCAGAATATTCAATTTTACCCTTCTAGTCCGTTCGATTCCCGGCGACTTTCCGATCTCAGTCTTGCCACCGGCAAGGGAAAGACCCATCCATTGGAGAATCGACGCTCTCTCGATTCAGATGAGTCGGTGATGACGAGCTTTGGAAGCGCGGATAATAGCGACGGCGACCGGCGGAAAGAGAGGAAGCTTTTAAACTTATTCATCTGA

Protein sequence

MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQRSALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSRNPTAETESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTHPLENRRSLDSDESVMTSFGSADNSDGDRRKERKLLNLFI

Homology

[Close]

BLAST of Carg10638 vs. NCBI nr
Match: KAG7037768.1 (LOB domain-containing protein 38 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 413.7 bits (1062), Expect = 9.4e-112
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSRNPT 120
           SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSRNPT
Sbjct: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSRNPT 120

Query: 121 AETESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTHPLENRRSLDSDES 180
           AETESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTHPLENRRSLDSDES
Sbjct: 121 AETESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTHPLENRRSLDSDES 180

Query: 181 VMTSFGSADNSDGDRRKERKLLNLFI 207
           VMTSFGSADNSDGDRRKERKLLNLFI
Sbjct: 181 VMTSFGSADNSDGDRRKERKLLNLFI 206

[Close]

BLAST of Carg10638 vs. NCBI nr
Match: KAG6608433.1 (LOB domain-containing protein 38, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 407.9 bits (1047), Expect = 5.1e-110
Identity = 203/206 (98.54%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSRNPT 120
           SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFS NPT
Sbjct: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSGNPT 120

Query: 121 AETESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTHPLENRRSLDSDES 180
           AETESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTHPLENRRSLDS+ES
Sbjct: 121 AETESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTHPLENRRSLDSEES 180

Query: 181 VMTSFGSADNSDGDRRKERKLLNLFI 207
           VMTSFGS DNSDGDRRKERKLLNLFI
Sbjct: 181 VMTSFGSTDNSDGDRRKERKLLNLFI 206

[Close]

BLAST of Carg10638 vs. NCBI nr
Match: XP_023525090.1 (LOB domain-containing protein 39-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 404.4 bits (1038), Expect = 5.7e-109
Identity = 202/206 (98.06%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSRNPT 120
           SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFS NPT
Sbjct: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSGNPT 120

Query: 121 AETESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTHPLENRRSLDSDES 180
           AETESSLSLNTDVWTSTTQNIQFYPSS FDSRRLSDLSLATGKGKTHPLENRRSLDS+ES
Sbjct: 121 AETESSLSLNTDVWTSTTQNIQFYPSSQFDSRRLSDLSLATGKGKTHPLENRRSLDSEES 180

Query: 181 VMTSFGSADNSDGDRRKERKLLNLFI 207
           VMTSFGSAD+SDGDRRKERKLLNLFI
Sbjct: 181 VMTSFGSADHSDGDRRKERKLLNLFI 206

[Close]

BLAST of Carg10638 vs. NCBI nr
Match: XP_022940004.1 (LOB domain-containing protein 39-like [Cucurbita moschata])

HSP 1 Score: 404.4 bits (1038), Expect = 5.7e-109
Identity = 202/206 (98.06%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPE+QGNATLFLAKFFGRSDLLSFISAVPHHQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPHHQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSRNPT 120
           SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFS NPT
Sbjct: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSGNPT 120

Query: 121 AETESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTHPLENRRSLDSDES 180
           AETESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTH LENRRSLDS+ES
Sbjct: 121 AETESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTHLLENRRSLDSEES 180

Query: 181 VMTSFGSADNSDGDRRKERKLLNLFI 207
           VMTSFGSADNSDGDRRKERKLLNLFI
Sbjct: 181 VMTSFGSADNSDGDRRKERKLLNLFI 206

[Close]

BLAST of Carg10638 vs. NCBI nr
Match: XP_022981991.1 (LOB domain-containing protein 39-like [Cucurbita maxima])

HSP 1 Score: 396.7 bits (1018), Expect = 1.2e-106
Identity = 198/206 (96.12%), Postives = 200/206 (97.09%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR
Sbjct: 80  MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 139

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSRNPT 120
           SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAA ETVLRGGVPR NLGIEFS NPT
Sbjct: 140 SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPRENLGIEFSGNPT 199

Query: 121 AETESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTHPLENRRSLDSDES 180
           AETESSLSLNTDVWTSTTQNIQ YPSS FDSRRLSDLSLATGKGKTHPLENRRSLDS+ES
Sbjct: 200 AETESSLSLNTDVWTSTTQNIQLYPSSQFDSRRLSDLSLATGKGKTHPLENRRSLDSEES 259

Query: 181 VMTSFGSADNSDGDRRKERKLLNLFI 207
           VMTSFGSAD+ DGDRRKERKLLNLFI
Sbjct: 260 VMTSFGSADHRDGDRRKERKLLNLFI 285

[Close]

BLAST of Carg10638 vs. ExPASy Swiss-Prot
Match: Q9SZE8 (LOB domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=LBD39 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.9e-45
Identity = 117/241 (48.55%), Postives = 144/241 (59.75%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSE C+LR  L WI+S E+QG+AT+F+AKFFGR+ L+SFIS+VP  QR
Sbjct: 1   MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGV--PRANLGIEFSRN 120
            ALFQSLLFEACGRTVNPV+GAVG+L + NWHVCQAA ETVLRGG   P ++L +E    
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPISDL-LESPSL 120

Query: 121 PTAETESSLSLNTDVWTSTTQNIQFYPS--------SPFDSRRL---SDLSLATGKGKTH 180
             +  ESS   + DV  + T + +F  S        S  + +RL   SDL L    G T 
Sbjct: 121 MISCDESSEIWHQDVSRNQTHHCRFSTSRSTTEMKDSLVNRKRLKSDSDLDLQVNHGLTL 180

Query: 181 PLE------------------NRRSLDSDESVMTSFGS----ADNSDGDRRKERKLLNLF 207
                                +R    S+ESV TS        DN     + E+KLLNLF
Sbjct: 181 TAPAVPVPFLPPSSFCKVVKGDRPGSPSEESVTTSCWENGMRGDNKQKRNKGEKKLLNLF 240

[Close]

BLAST of Carg10638 vs. ExPASy Swiss-Prot
Match: Q9SN23 (LOB domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=LBD38 PE=1 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 8.7e-44
Identity = 119/247 (48.18%), Postives = 150/247 (60.73%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSE C+LR  + WI+SPEAQG+AT+F+AKFFGR+ L+SFISAVP  Q 
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGG----VPRANLGIEFS 120
            ALFQSLL+EACGRTVNPV+GAVGLL +GNW+VCQAA ETVLRGG    +P    G  F+
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFA 120

Query: 121 RNPTAETESSLSLNTDVWT------STTQNIQFY------------PSSPFDSRRLS--- 180
             P+  ++ +  + T++        S  +NI  +             +SP   +RLS   
Sbjct: 121 GFPSPTSDEASEICTEMLNLRKADDSGDRNIYHHCRFSSSRSRSRSTASPPKRKRLSSEQ 180

Query: 181 ------DLSL-ATGKGKTHPL-ENRRSLDSDESVMTSFGSADNSDGDR---------RKE 206
                 DLSL      KT P  E+  S+ S+ESV T+    +N+ GDR            
Sbjct: 181 QPSSELDLSLIPIYPIKTLPFKEDTPSMYSEESV-TTVSFQNNNAGDRYVRCGGGGGGAT 240

[Close]

BLAST of Carg10638 vs. ExPASy Swiss-Prot
Match: Q9FN11 (LOB domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=LBD37 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.3e-43
Identity = 102/197 (51.78%), Postives = 130/197 (65.99%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSE C+LR  + WI++ +AQG+AT+F+AKFFGR+ L+SFISAVP  QR
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRA-------NLGI 120
            ALFQSLL+EACGRTVNPV+GA+G+L +GNW++CQAA ETVLRGG  R          G 
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGF 120

Query: 121 EFSRNPTAETESSL---SLNTDVWTSTTQNIQFYPSSPFDSRRLSDL--SLATGKGKTHP 180
               +PT+E  S +    LN     ST +NI  Y  S F S R      S +  K K   
Sbjct: 121 AGFPSPTSEEASEICTEMLNLQQNDSTDRNI--YHHSRFSSSRSRSTMDSSSPTKRKRLS 180

Query: 181 LENRRSLDSDESVMTSF 186
            E++ S + D S++ +F
Sbjct: 181 SEDQPSSELDLSLIPNF 195

[Close]

BLAST of Carg10638 vs. ExPASy Swiss-Prot
Match: Q9ZW96 (LOB domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=LBD40 PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.1e-36
Identity = 68/104 (65.38%), Postives = 84/104 (80.77%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSE C +R  L WI S E+Q NAT+FLAKF+GR+ L++ ++  P H R
Sbjct: 3   MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLR 62

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRG 105
            A+F+SLL+EACGR VNP+ G+VGLL SGNWH+CQAA E V+RG
Sbjct: 63  PAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRG 106

[Close]

BLAST of Carg10638 vs. ExPASy Swiss-Prot
Match: Q9M886 (LOB domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=LBD41 PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.3e-35
Identity = 68/104 (65.38%), Postives = 83/104 (79.81%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSE C +R  L WI SPEAQ NAT+FLAKF+GR+ L++ I+A P+H R
Sbjct: 3   MSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLR 62

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRG 105
             +F+SLL EACGR VNP+ G+VGLL SGNW +CQ A E V++G
Sbjct: 63  PGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKG 106

[Close]

BLAST of Carg10638 vs. ExPASy TrEMBL
Match: A0A6J1FIT3 (LOB domain-containing protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111445767 PE=3 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 2.8e-109
Identity = 202/206 (98.06%), Postives = 204/206 (99.03%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPE+QGNATLFLAKFFGRSDLLSFISAVPHHQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPESQGNATLFLAKFFGRSDLLSFISAVPHHQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSRNPT 120
           SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFS NPT
Sbjct: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSGNPT 120

Query: 121 AETESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTHPLENRRSLDSDES 180
           AETESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTH LENRRSLDS+ES
Sbjct: 121 AETESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTHLLENRRSLDSEES 180

Query: 181 VMTSFGSADNSDGDRRKERKLLNLFI 207
           VMTSFGSADNSDGDRRKERKLLNLFI
Sbjct: 181 VMTSFGSADNSDGDRRKERKLLNLFI 206

[Close]

BLAST of Carg10638 vs. ExPASy TrEMBL
Match: A0A6J1IY30 (LOB domain-containing protein 39-like OS=Cucurbita maxima OX=3661 GN=LOC111480976 PE=3 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 5.7e-107
Identity = 198/206 (96.12%), Postives = 200/206 (97.09%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR
Sbjct: 80  MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 139

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSRNPT 120
           SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAA ETVLRGGVPR NLGIEFS NPT
Sbjct: 140 SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAVETVLRGGVPRENLGIEFSGNPT 199

Query: 121 AETESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTHPLENRRSLDSDES 180
           AETESSLSLNTDVWTSTTQNIQ YPSS FDSRRLSDLSLATGKGKTHPLENRRSLDS+ES
Sbjct: 200 AETESSLSLNTDVWTSTTQNIQLYPSSQFDSRRLSDLSLATGKGKTHPLENRRSLDSEES 259

Query: 181 VMTSFGSADNSDGDRRKERKLLNLFI 207
           VMTSFGSAD+ DGDRRKERKLLNLFI
Sbjct: 260 VMTSFGSADHRDGDRRKERKLLNLFI 285

[Close]

BLAST of Carg10638 vs. ExPASy TrEMBL
Match: A0A0A0L3S5 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G642430 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 5.8e-83
Identity = 166/208 (79.81%), Postives = 178/208 (85.58%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVP+HQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSRNPT 120
            ALFQSLLFEACGRTVNPVSGAVGLLS+GNWHVCQAAA+T+L GGV R   GIE S NPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSTGNWHVCQAAADTILNGGVLRPIPGIEISANPT 120

Query: 121 AE-TESSLSLNTDVWTSTT-QNIQFYPSSPFDSRRLSDLSLATGKGKTHPLENRRSLDSD 180
               +SSL+ NTDVWT+TT  N+QFYPS+P D R L DLSL   K   HPLENRRSLDS+
Sbjct: 121 PNLDDSSLTFNTDVWTTTTVHNLQFYPSTPSDFRCLPDLSLGRAKNH-HPLENRRSLDSE 180

Query: 181 ESVMTSFGSADNSDGDRRKERKLLNLFI 207
           ESVMTSFGS D   GD+RKE KLLNLF+
Sbjct: 181 ESVMTSFGSGDL--GDQRKETKLLNLFV 205

[Close]

BLAST of Carg10638 vs. ExPASy TrEMBL
Match: A0A5A7VDI5 (LOB domain-containing protein 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G001480 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.3e-82
Identity = 163/207 (78.74%), Postives = 176/207 (85.02%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVP+HQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSRNPT 120
            ALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAA+T+L GGV R   GIE S NPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAADTILNGGVLRPIPGIEISGNPT 120

Query: 121 AE-TESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTHPLENRRSLDSDE 180
               +SS + N DVWT+TT N+QFYPS+P D R L DL L   + K HPLENRRSLDS+E
Sbjct: 121 PNLDDSSFTFNNDVWTTTTHNLQFYPSTPSDFRCLPDLGL--NRTKKHPLENRRSLDSEE 180

Query: 181 SVMTSFGSADNSDGDRRKERKLLNLFI 207
           SVMTSFGS D   G++RKE KLLNLF+
Sbjct: 181 SVMTSFGSGDL--GEQRKETKLLNLFV 203

[Close]

BLAST of Carg10638 vs. ExPASy TrEMBL
Match: A0A1S3BVG9 (LOB domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LOC103493596 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 1.3e-82
Identity = 163/207 (78.74%), Postives = 176/207 (85.02%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVP+HQR
Sbjct: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPYHQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRANLGIEFSRNPT 120
            ALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAA+T+L GGV R   GIE S NPT
Sbjct: 61  PALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAADTILNGGVLRPIPGIEISGNPT 120

Query: 121 AE-TESSLSLNTDVWTSTTQNIQFYPSSPFDSRRLSDLSLATGKGKTHPLENRRSLDSDE 180
               +SS + N DVWT+TT N+QFYPS+P D R L DL L   + K HPLENRRSLDS+E
Sbjct: 121 PNLDDSSFTFNNDVWTTTTHNLQFYPSTPSDFRCLPDLGL--NRTKKHPLENRRSLDSEE 180

Query: 181 SVMTSFGSADNSDGDRRKERKLLNLFI 207
           SVMTSFGS D   G++RKE KLLNLF+
Sbjct: 181 SVMTSFGSGDL--GEQRKETKLLNLFV 203

[Close]

BLAST of Carg10638 vs. TAIR 10
Match: AT4G37540.1 (LOB domain-containing protein 39 )

HSP 1 Score: 181.8 bits (460), Expect = 5.6e-46
Identity = 117/241 (48.55%), Postives = 144/241 (59.75%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSE C+LR  L WI+S E+QG+AT+F+AKFFGR+ L+SFIS+VP  QR
Sbjct: 1   MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGV--PRANLGIEFSRN 120
            ALFQSLLFEACGRTVNPV+GAVG+L + NWHVCQAA ETVLRGG   P ++L +E    
Sbjct: 61  PALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPISDL-LESPSL 120

Query: 121 PTAETESSLSLNTDVWTSTTQNIQFYPS--------SPFDSRRL---SDLSLATGKGKTH 180
             +  ESS   + DV  + T + +F  S        S  + +RL   SDL L    G T 
Sbjct: 121 MISCDESSEIWHQDVSRNQTHHCRFSTSRSTTEMKDSLVNRKRLKSDSDLDLQVNHGLTL 180

Query: 181 PLE------------------NRRSLDSDESVMTSFGS----ADNSDGDRRKERKLLNLF 207
                                +R    S+ESV TS        DN     + E+KLLNLF
Sbjct: 181 TAPAVPVPFLPPSSFCKVVKGDRPGSPSEESVTTSCWENGMRGDNKQKRNKGEKKLLNLF 240

[Close]

BLAST of Carg10638 vs. TAIR 10
Match: AT3G49940.1 (LOB domain-containing protein 38 )

HSP 1 Score: 178.3 bits (451), Expect = 6.2e-45
Identity = 119/247 (48.18%), Postives = 150/247 (60.73%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSE C+LR  + WI+SPEAQG+AT+F+AKFFGR+ L+SFISAVP  Q 
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGG----VPRANLGIEFS 120
            ALFQSLL+EACGRTVNPV+GAVGLL +GNW+VCQAA ETVLRGG    +P    G  F+
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFA 120

Query: 121 RNPTAETESSLSLNTDVWT------STTQNIQFY------------PSSPFDSRRLS--- 180
             P+  ++ +  + T++        S  +NI  +             +SP   +RLS   
Sbjct: 121 GFPSPTSDEASEICTEMLNLRKADDSGDRNIYHHCRFSSSRSRSRSTASPPKRKRLSSEQ 180

Query: 181 ------DLSL-ATGKGKTHPL-ENRRSLDSDESVMTSFGSADNSDGDR---------RKE 206
                 DLSL      KT P  E+  S+ S+ESV T+    +N+ GDR            
Sbjct: 181 QPSSELDLSLIPIYPIKTLPFKEDTPSMYSEESV-TTVSFQNNNAGDRYVRCGGGGGGAT 240

[Close]

BLAST of Carg10638 vs. TAIR 10
Match: AT5G67420.1 (LOB domain-containing protein 37 )

HSP 1 Score: 176.0 bits (445), Expect = 3.1e-44
Identity = 102/197 (51.78%), Postives = 130/197 (65.99%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSE C+LR  + WI++ +AQG+AT+F+AKFFGR+ L+SFISAVP  QR
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRGGVPRA-------NLGI 120
            ALFQSLL+EACGRTVNPV+GA+G+L +GNW++CQAA ETVLRGG  R          G 
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGF 120

Query: 121 EFSRNPTAETESSL---SLNTDVWTSTTQNIQFYPSSPFDSRRLSDL--SLATGKGKTHP 180
               +PT+E  S +    LN     ST +NI  Y  S F S R      S +  K K   
Sbjct: 121 AGFPSPTSEEASEICTEMLNLQQNDSTDRNI--YHHSRFSSSRSRSTMDSSSPTKRKRLS 180

Query: 181 LENRRSLDSDESVMTSF 186
            E++ S + D S++ +F
Sbjct: 181 SEDQPSSELDLSLIPNF 195

[Close]

BLAST of Carg10638 vs. TAIR 10
Match: AT1G67100.1 (LOB domain-containing protein 40 )

HSP 1 Score: 152.5 bits (384), Expect = 3.6e-37
Identity = 68/104 (65.38%), Postives = 84/104 (80.77%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSE C +R  L WI S E+Q NAT+FLAKF+GR+ L++ ++  P H R
Sbjct: 3   MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLR 62

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRG 105
            A+F+SLL+EACGR VNP+ G+VGLL SGNWH+CQAA E V+RG
Sbjct: 63  PAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRG 106

[Close]

BLAST of Carg10638 vs. TAIR 10
Match: AT3G02550.1 (LOB domain-containing protein 41 )

HSP 1 Score: 149.4 bits (376), Expect = 3.1e-36
Identity = 68/104 (65.38%), Postives = 83/104 (79.81%), Query Frame = 0


Query: 1   MSCNGCRVLRKGCSEACVLRSSLHWIDSPEAQGNATLFLAKFFGRSDLLSFISAVPHHQR 60
           MSCNGCRVLRKGCSE C +R  L WI SPEAQ NAT+FLAKF+GR+ L++ I+A P+H R
Sbjct: 3   MSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLR 62

Query: 61  SALFQSLLFEACGRTVNPVSGAVGLLSSGNWHVCQAAAETVLRG 105
             +F+SLL EACGR VNP+ G+VGLL SGNW +CQ A E V++G
Sbjct: 63  PGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKG 106

The following BLAST results are available for this feature:

BLAST of Carg10638 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037768.1	9.4e-112	100.00	LOB domain-containing protein 38 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6608433.1	5.1e-110	98.54	LOB domain-containing protein 38, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_023525090.1	5.7e-109	98.06	LOB domain-containing protein 39-like [Cucurbita pepo subsp. pepo]	[more]
XP_022940004.1	5.7e-109	98.06	LOB domain-containing protein 39-like [Cucurbita moschata]	[more]
XP_022981991.1	1.2e-106	96.12	LOB domain-containing protein 39-like [Cucurbita maxima]	[more]

BLAST of Carg10638 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZE8	7.9e-45	48.55	LOB domain-containing protein 39 OS=Arabidopsis thaliana OX=3702 GN=LBD39 PE=2 S...	[more]
Q9SN23	8.7e-44	48.18	LOB domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=LBD38 PE=1 S...	[more]
Q9FN11	4.3e-43	51.78	LOB domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=LBD37 PE=2 S...	[more]
Q9ZW96	5.1e-36	65.38	LOB domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=LBD40 PE=2 S...	[more]
Q9M886	4.3e-35	65.38	LOB domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=LBD41 PE=2 S...	[more]

BLAST of Carg10638 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FIT3	2.8e-109	98.06	LOB domain-containing protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111445...	[more]
A0A6J1IY30	5.7e-107	96.12	LOB domain-containing protein 39-like OS=Cucurbita maxima OX=3661 GN=LOC11148097...	[more]
A0A0A0L3S5	5.8e-83	79.81	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G642430 PE=3 SV...	[more]
A0A5A7VDI5	1.3e-82	78.74	LOB domain-containing protein 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BVG9	1.3e-82	78.74	LOB domain-containing protein 39-like OS=Cucumis melo OX=3656 GN=LOC103493596 PE...	[more]

BLAST of Carg10638 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37540.1	5.6e-46	48.55	LOB domain-containing protein 39	[more]
AT3G49940.1	6.2e-45	48.18	LOB domain-containing protein 38	[more]
AT5G67420.1	3.1e-44	51.78	LOB domain-containing protein 37	[more]
AT1G67100.1	3.6e-37	65.38	LOB domain-containing protein 40	[more]
AT3G02550.1	3.1e-36	65.38	LOB domain-containing protein 41	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 2..101 e-value: 2.8E-24 score: 85.6
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 1..107 score: 17.049347
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..195
None	No IPR available	PANTHER	PTHR31304	LOB DOMAIN-CONTAINING PROTEIN 38	coord: 1..206
None	No IPR available	PANTHER	PTHR31304:SF38	LOB DOMAIN-CONTAINING PROTEIN 39-LIKE	coord: 1..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10638-RA	Carg10638-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression