Carg10636 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10636
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Glycosyl hydrolase family 35 protein
Location	Carg_Chr01: 12205842 .. 12206445 (-)
RNA-Seq Expression	Carg10636
Synteny	Carg10636

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGTGTGTGTGTGTGTGTGTTTCGGAGCTCTTCGATTCATCCTGGGTCTTGTCCGTTATGAATCTTTCTGGGTTCTGGGTTGTGTTTTTGCTGCTCCAATTAACTTCATTCTTGCCTTTCTTTCCCAGCTATATAAATGCCTCCTCCGCCTCCGGTAATTTACTCTGTTCCTATCCCCTGTTCTTCTCTGTTCTACTCTGTTCTTACTGTAACTTTGCATGTTCATTTTGGTGTGCTTTCCTTAACTGGAATTGCAGATATGGCTGTGAACCACCACCATGTTAACCCAAATGGATGCTTCTCCGACATGCCATCAAACAGGAAGCTGAAGGTACTTGCTTTCTAAATAACCCTTCAATTCCCACAATTGTTCTCTACTGAATGGAATTGAAATCCGTTTCTTTGTTCTCAGTTCCAGGCTGCCGATGAACATAACAAAAAGAAGGGTCACCCAAGTGATGTAAATCTCGATGACTACCATCCCATTGATCCTGTTCCAAGTTCAAAGACATCGGTAAAACCTGGGCCCATAGAGCACGGCGTTCCTCTCCTTCCTCATATGCCAAATCCTCCTCCTCCCGCTGAGCCGGGCGATTATGCTTAG

mRNA sequence

GAGTGTGTGTGTGTGTGTGTTTCGGAGCTCTTCGATTCATCCTGGGTCTTGTCCGTTATGAATCTTTCTGGGTTCTGGGTTGTGTTTTTGCTGCTCCAATTAACTTCATTCTTGCCTTTCTTTCCCAGCTATATAAATGCCTCCTCCGCCTCCGATATGGCTGTGAACCACCACCATGTTAACCCAAATGGATGCTTCTCCGACATGCCATCAAACAGGAAGCTGAAGTTCCAGGCTGCCGATGAACATAACAAAAAGAAGGGTCACCCAAGTGATGTAAATCTCGATGACTACCATCCCATTGATCCTGTTCCAAGTTCAAAGACATCGGTAAAACCTGGGCCCATAGAGCACGGCGTTCCTCTCCTTCCTCATATGCCAAATCCTCCTCCTCCCGCTGAGCCGGGCGATTATGCTTAG

Coding sequence (CDS)

ATGAATCTTTCTGGGTTCTGGGTTGTGTTTTTGCTGCTCCAATTAACTTCATTCTTGCCTTTCTTTCCCAGCTATATAAATGCCTCCTCCGCCTCCGATATGGCTGTGAACCACCACCATGTTAACCCAAATGGATGCTTCTCCGACATGCCATCAAACAGGAAGCTGAAGTTCCAGGCTGCCGATGAACATAACAAAAAGAAGGGTCACCCAAGTGATGTAAATCTCGATGACTACCATCCCATTGATCCTGTTCCAAGTTCAAAGACATCGGTAAAACCTGGGCCCATAGAGCACGGCGTTCCTCTCCTTCCTCATATGCCAAATCCTCCTCCTCCCGCTGAGCCGGGCGATTATGCTTAG

Protein sequence

MNLSGFWVVFLLLQLTSFLPFFPSYINASSASDMAVNHHHVNPNGCFSDMPSNRKLKFQAADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA

Homology

[Close]

BLAST of Carg10636 vs. NCBI nr
Match: KAG6608435.1 (hypothetical protein SDJN03_01777, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 249.6 bits (636), Expect = 1.4e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MNLSGFWVVFLLLQLTSFLPFFPSYINASSASDMAVNHHHVNPNGCFSDMPSNRKLKFQA 60
           MNLSGFWVVFLLLQLTSFLPFFPSYINASSASDMAVNHHHVNPNGCFSDMPSNRKLKFQA
Sbjct: 31  MNLSGFWVVFLLLQLTSFLPFFPSYINASSASDMAVNHHHVNPNGCFSDMPSNRKLKFQA 90

Query: 61  ADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA 120
           ADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA
Sbjct: 91  ADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA 150

[Close]

BLAST of Carg10636 vs. NCBI nr
Match: KAG7037770.1 (hypothetical protein SDJN02_01401 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 249.6 bits (636), Expect = 1.4e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MNLSGFWVVFLLLQLTSFLPFFPSYINASSASDMAVNHHHVNPNGCFSDMPSNRKLKFQA 60
           MNLSGFWVVFLLLQLTSFLPFFPSYINASSASDMAVNHHHVNPNGCFSDMPSNRKLKFQA
Sbjct: 1   MNLSGFWVVFLLLQLTSFLPFFPSYINASSASDMAVNHHHVNPNGCFSDMPSNRKLKFQA 60

Query: 61  ADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA 120
           ADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA
Sbjct: 61  ADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA 120

[Close]

BLAST of Carg10636 vs. NCBI nr
Match: XP_022941192.1 (uncharacterized protein LOC111446569 isoform X1 [Cucurbita moschata])

HSP 1 Score: 244.2 bits (622), Expect = 5.7e-61
Identity = 118/120 (98.33%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 1   MNLSGFWVVFLLLQLTSFLPFFPSYINASSASDMAVNHHHVNPNGCFSDMPSNRKLKFQA 60
           MNLSGFWVVFLLLQLTSFLPFFPSYINASSASDMAVNHHHVNPNGC SDMP NRKLKFQA
Sbjct: 40  MNLSGFWVVFLLLQLTSFLPFFPSYINASSASDMAVNHHHVNPNGCSSDMPLNRKLKFQA 99

Query: 61  ADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA 120
           ADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA
Sbjct: 100 ADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA 159

[Close]

BLAST of Carg10636 vs. NCBI nr
Match: XP_023525729.1 (uncharacterized protein LOC111789247 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.0 bits (611), Expect = 1.1e-59
Identity = 114/120 (95.00%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MNLSGFWVVFLLLQLTSFLPFFPSYINASSASDMAVNHHHVNPNGCFSDMPSNRKLKFQA 60
           MNLSGFWV+F LLQLTSF+P FP+YINASSASDMAVNHHHVNPNGCFSDMPSNRKLKF A
Sbjct: 58  MNLSGFWVLFFLLQLTSFMPSFPTYINASSASDMAVNHHHVNPNGCFSDMPSNRKLKFHA 117

Query: 61  ADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA 120
           ADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA
Sbjct: 118 ADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA 177

[Close]

BLAST of Carg10636 vs. NCBI nr
Match: XP_022941193.1 (uncharacterized protein LOC111446569 isoform X2 [Cucurbita moschata])

HSP 1 Score: 235.0 bits (598), Expect = 3.5e-58
Identity = 116/120 (96.67%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MNLSGFWVVFLLLQLTSFLPFFPSYINASSASDMAVNHHHVNPNGCFSDMPSNRKLKFQA 60
           MNLSGFWVVFLLLQLTSFLPFFPSYINASSASDMAVNHHHVNPNGC SDMP NRKLK  A
Sbjct: 40  MNLSGFWVVFLLLQLTSFLPFFPSYINASSASDMAVNHHHVNPNGCSSDMPLNRKLK--A 99

Query: 61  ADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA 120
           ADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA
Sbjct: 100 ADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA 157

[Close]

BLAST of Carg10636 vs. ExPASy TrEMBL
Match: A0A6J1FLR4 (uncharacterized protein LOC111446569 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446569 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.8e-61
Identity = 118/120 (98.33%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 1   MNLSGFWVVFLLLQLTSFLPFFPSYINASSASDMAVNHHHVNPNGCFSDMPSNRKLKFQA 60
           MNLSGFWVVFLLLQLTSFLPFFPSYINASSASDMAVNHHHVNPNGC SDMP NRKLKFQA
Sbjct: 40  MNLSGFWVVFLLLQLTSFLPFFPSYINASSASDMAVNHHHVNPNGCSSDMPLNRKLKFQA 99

Query: 61  ADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA 120
           ADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA
Sbjct: 100 ADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA 159

[Close]

BLAST of Carg10636 vs. ExPASy TrEMBL
Match: A0A6J1FRF9 (uncharacterized protein LOC111446569 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446569 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.7e-58
Identity = 116/120 (96.67%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MNLSGFWVVFLLLQLTSFLPFFPSYINASSASDMAVNHHHVNPNGCFSDMPSNRKLKFQA 60
           MNLSGFWVVFLLLQLTSFLPFFPSYINASSASDMAVNHHHVNPNGC SDMP NRKLK  A
Sbjct: 40  MNLSGFWVVFLLLQLTSFLPFFPSYINASSASDMAVNHHHVNPNGCSSDMPLNRKLK--A 99

Query: 61  ADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA 120
           ADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA
Sbjct: 100 ADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA 157

[Close]

BLAST of Carg10636 vs. ExPASy TrEMBL
Match: A0A6J1J3M3 (uncharacterized protein LOC111480979 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480979 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.2e-56
Identity = 109/120 (90.83%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 1   MNLSGFWVVFLLLQLTSFLPFFPSYINASSASDMAVNHHHVNPNGCFSDMPSNRKLKFQA 60
           MNLSGFW V LLLQLTSFLP FP+YINASSAS+MAVNHHHVNPNGCFSDMP NRKLKFQA
Sbjct: 37  MNLSGFWAVLLLLQLTSFLPSFPTYINASSASEMAVNHHHVNPNGCFSDMPLNRKLKFQA 96

Query: 61  ADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA 120
           ADEHNKKK HPS VNLDDYHPIDPVPSSKTS+KPGPIEHG PLLPHMPNPPPPA+PGDYA
Sbjct: 97  ADEHNKKKAHPSGVNLDDYHPIDPVPSSKTSLKPGPIEHGAPLLPHMPNPPPPAQPGDYA 156

[Close]

BLAST of Carg10636 vs. ExPASy TrEMBL
Match: A0A6J1J3D1 (uncharacterized protein LOC111480979 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480979 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 7.3e-54
Identity = 107/120 (89.17%), Postives = 111/120 (92.50%), Query Frame = 0


Query: 1   MNLSGFWVVFLLLQLTSFLPFFPSYINASSASDMAVNHHHVNPNGCFSDMPSNRKLKFQA 60
           MNLSGFW V LLLQLTSFLP FP+YINASSAS+MAVNHHHVNPNGCFSDMP NRKLK  A
Sbjct: 37  MNLSGFWAVLLLLQLTSFLPSFPTYINASSASEMAVNHHHVNPNGCFSDMPLNRKLK--A 96

Query: 61  ADEHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGDYA 120
           ADEHNKKK HPS VNLDDYHPIDPVPSSKTS+KPGPIEHG PLLPHMPNPPPPA+PGDYA
Sbjct: 97  ADEHNKKKAHPSGVNLDDYHPIDPVPSSKTSLKPGPIEHGAPLLPHMPNPPPPAQPGDYA 154

[Close]

BLAST of Carg10636 vs. ExPASy TrEMBL
Match: A0A0A0L2J3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642400 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.4e-43
Identity = 90/122 (73.77%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 1   MNLSGFWVVFLLLQLTSFLPFFPSYINASSASDMAVNHHHVNPNGCFSDMPSNRKLKFQA 60
           M LSGFWV F +LQ T  L FFPSYINASS+SD+A+NHHHVN N C SD+  NRKLKFQ 
Sbjct: 1   MKLSGFWVFFFVLQTTLLLHFFPSYINASSSSDIALNHHHVNANKCLSDILLNRKLKFQT 60

Query: 61  AD--EHNKKKGHPSDVNLDDYHPIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPAEPGD 120
            +   H +KK HP D+NLDDYHPIDPVPSSKTSVKPGPIEHG PLLPHMPNPPPP++PG 
Sbjct: 61  DEHCNHGRKKVHPDDLNLDDYHPIDPVPSSKTSVKPGPIEHGAPLLPHMPNPPPPSQPGG 120

[Close]

BLAST of Carg10636 vs. TAIR 10
Match: AT5G01075.1 (Glycosyl hydrolase family 35 protein )

HSP 1 Score: 56.2 bits (134), Expect = 2.1e-08
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 0


Query: 74  VNLDDYH-PIDPVPSSKTSVKPGPIEHGVPLLPHMPNPPPPA 115
           V L+DY+ P+DP P++K S+KPGPIEHG PL P++P PP P+
Sbjct: 28  VGLEDYNFPVDPTPTTKASIKPGPIEHGTPLNPYIPKPPSPS 69

The following BLAST results are available for this feature:

BLAST of Carg10636 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608435.1	1.4e-62	100.00	hypothetical protein SDJN03_01777, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7037770.1	1.4e-62	100.00	hypothetical protein SDJN02_01401 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022941192.1	5.7e-61	98.33	uncharacterized protein LOC111446569 isoform X1 [Cucurbita moschata]	[more]
XP_023525729.1	1.1e-59	95.00	uncharacterized protein LOC111789247 [Cucurbita pepo subsp. pepo]	[more]
XP_022941193.1	3.5e-58	96.67	uncharacterized protein LOC111446569 isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg10636 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg10636 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FLR4	2.8e-61	98.33	uncharacterized protein LOC111446569 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FRF9	1.7e-58	96.67	uncharacterized protein LOC111446569 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J3M3	1.2e-56	90.83	uncharacterized protein LOC111480979 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1J3D1	7.3e-54	89.17	uncharacterized protein LOC111480979 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0L2J3	3.4e-43	73.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642400 PE=4 SV=1	[more]

BLAST of Carg10636 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01075.1	2.1e-08	59.52	Glycosyl hydrolase family 35 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..77
None	No IPR available	PANTHER	PTHR37249	OS03G0206201 PROTEIN	coord: 1..118
None	No IPR available	PANTHER	PTHR37249:SF3	BNAANNG14020D PROTEIN	coord: 1..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10636-RA	Carg10636-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane