Carg10614 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10614
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr01: 12284682 .. 12287082 (-)
RNA-Seq ExpressionCarg10614
SyntenyCarg10614
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGATCCATATTTCCACCACAGCGGGTAACAACAGGGGTTGGGCTGAAGGCGCGCGGCCACCGCCCATGCTGAAACTTCTCGTCTTATGGCTGTCGCCTCCTCATCGGAAGAGAGTCGCAGCTTCCACTAATTGATGAATGGTGAGTGATTCGCCTCTTTGCCCTCCGGTAATATATTTTCTTTTTTCGTAACAGGTATCGCTTAAACATCTGCATAATTAAATTAATCTAGAACGCGAATGTCAATTTTCCGACAGATTATTCTCGAATTAGAAAACAATAATGTAATGGCTTGCAAATTGTTTATACGTTTCTTTTTCCTTTGGTGTGAGTGTATGGGCGTTCTACTGAGAATGTTCTTGGAATTACAATTGAGATGCAGAAAATTGAAAGCACAGACAATGCGATTTCGAGATGCGCCTCGGAATTGATCAAATTTAGGGAAAATGTGGCTGATATTTGGGAATGGAAGTAATTGGGGGATTAATAGAGGTAAACATGCAGGGCATTAGAGTATAAGTCCACATGCGAGGGCAAACTCTGGGAAATGCTAAGAATTTTGCACATTCAACTATTGGTCTTTGGAAAGGCAGATCTGGAATGCAATTGTTTCTAATATTTAATACTCCTCTCCCTATCAAAATCCGACACAGAGGCCCAACAACAGTGAAATAGTTGTCCGACAAAGATAGATTTATCAGATTTCGAAGCGCGCAAACCATTTCCGGCACCATACCATACAGTAGATTTCCAGCGAAGTTCAATTGCTCCACTTTCTTTAAGCAAGCCAAGGAGAAGGGTAATGGTCCTGTTAAACGGTTGTTGCCGGCATCAAATACAACTGCTTCGTCAAGTGATCCTAATTCATAAGGCAAACACCCTGATAAGGAGTTGTTTACCAGCAGAACCTCAGTTAGAGATGACAAAGCTTCCACAATACCGACTGGAATTGAACCGCTAAATTTGTTGTTGGCTAAGGTGAGATAGAGAATATGGGTGCTGGAAAGACTGTCTGGGAGATTTTGCATGAGATTGTTGTTGTTGATCAGGAGAAAATCAAAGTCCTGCGCGAAGAGTCGAGGTGGGACTGACCCAGTGAAGAAATTGAACCGAAGGTCCAAGAAGGTTAGGCTGTTCAAACCAACAACAGCAGTAGGAAAAGGACCAGATAACCTGTTGTTGCTCACGTCCAGCTCGTATAGATAAGGGAGCTTGGCAATGTTCGTGGAGATGGTGCCTGCAAATTTGTTGGAATTGGCATGAAACACAGCAATGTCAGGGAGCTGATCGAGGAAGCCTTCGAGGGATGGTGCACCGAGTTGGAAGCCATTGAAGTCTATGGATGCAACAGCCGTGGCCGACTTGTTGTCGGGTGGGTTGTCACAGTAAAAACCTTTGTAGTTGCATATATCCGATCCAACCCATGTTTTAGTGATTCCTTGAGGATCCGAGGAGATAATTGACTTGAATTTTTGAATCACAGGGTACACCACTGAAAGCCTCAGGTCTTCAAATATCAAAACCTCTGCTTCAACAGGCAAAAGAGATGATCGCTGAGCAGTTATTGGTTGCTTACAGTGAGGCCACCCCCGATCACAGTCTTTTTCCGAATTTCTGTCACTACCCACTTTGAAGTATTGCGTTTTGTTGCCAGTAACATTGACTATGGCGTGGACAACGGAAGAAGAGAGCAGGTTGCCGAACAGAAACAGCAAAACACTGAGAGGTATTTTACTCATTTTTATCTGCCCAATAAATTGTTTTCTTTGTAGTTCATTCAGGATTTTATAAGAGGTGACAAAATCAGACCAAGATTCATAAACCAGCTTGTTATATATAAGAGAGTTGGCAAAAAGAAGAGGGGATGCTCTAAACGCTTTGGGATCAAGCAGGTATGGCTCTGTAAATTAGTAGGTGGATTTTTGTGTCAAGTTGATAAAGCATAAAACGATAAACCAAAAAATTACAGTACAAAAGTGGAAATCAATGATCCAAACTTTTCAAGAATTGGGTCCAGTACTTCGGGTCCCAACACTGAAAACAGAAACCAAATGGCAATGATAAAAAGAAAAAACTATAATGAAGAAAAACCACCATTGCATAAGTTGCTCGTCAGATTGGAGATATGGTTCATTAGTATATGACAACTTCATCTAACCTTTTCATATATTGATCCGCTACTTCAGTACTCTAAAGTGTCAATATTTTAATTTGCATTTGAACTTTGATTTTAAGATCATACATTATTCTGTGAGTTTTAAAGAGCAGCAGTCTTATATTGAAGGATCGGATAGGTCTTATGAAAGTCAACTATTGTTCTCTATTTTAGAGTCACCTTTTTGCCCATTGGATTCCACTCTTAAGATGATAATGATTGCGTTACTGCGTACAGCTGTGTAG

mRNA sequence

ATTGATCCATATTTCCACCACAGCGGGTAACAACAGGGGTTGGGCTGAAGGCGCGCGGCCACCGCCCATGCTGAAACTTCTCGTCTTATGGCTGTCGCCTCCTCATCGGAAGAGAGTCGCAGCTTCCACTAATTGATGAATGATAGATTTATCAGATTTCGAAGCGCGCAAACCATTTCCGGCACCATACCATACAGTAGATTTCCAGCGAAGTTCAATTGCTCCACTTTCTTTAAGCAAGCCAAGGAGAAGGGTAATGGTCCTGTTAAACGGAGAAAATCAAAGTCCTGCGCGAAGAGTCGAGGTGGGACTGACCCAGTGAAGAAATTGAACCGAAGGTCCAAGAAGATAAGGGAGCTTGGCAATGTTCGTGGAGATGGTGCCTGCAAATTTGTTGGAATTGGCATGAAACACAGCAATGTCAGGGAGCTGATCGAGGAAGCCTTCGAGGGATGGTGCACCGAGTTGGAAGCCATTGAAGTCTATGGATGCAACAGCCGTGGCCGACTTGGTACACCACTGAAAGCCTCAGGTCTTCAAATATCAAAACCTCTGCTTCAACAGGCAAAAGAGATGATCGCTGAGCATAACATTGACTATGGCGTGGACAACGGAAGAAGAGAGCAGGTTGCCGAACAGAAACAGCAAAACACTGAGAGAGGTGACAAAATCAGACCAAGATTCATAAACCAGCTTGTTATATATAAGAGAGTTGGCAAAAAGAAGAGGGGATGCTCTAAACGCTTTGGGATCAAGCAGATCATACATTATTCTGTGAGTTTTAAAGAGCAGCAGTCTTATATTGAAGGATCGGATAGGTCTTATGAAAGTCAACTATTGTTCTCTATTTTAGAGTCACCTTTTTGCCCATTGGATTCCACTCTTAAGATGATAATGATTGCGTTACTGCGTACAGCTGTGTAG

Coding sequence (CDS)

ATGAATGATAGATTTATCAGATTTCGAAGCGCGCAAACCATTTCCGGCACCATACCATACAGTAGATTTCCAGCGAAGTTCAATTGCTCCACTTTCTTTAAGCAAGCCAAGGAGAAGGGTAATGGTCCTGTTAAACGGAGAAAATCAAAGTCCTGCGCGAAGAGTCGAGGTGGGACTGACCCAGTGAAGAAATTGAACCGAAGGTCCAAGAAGATAAGGGAGCTTGGCAATGTTCGTGGAGATGGTGCCTGCAAATTTGTTGGAATTGGCATGAAACACAGCAATGTCAGGGAGCTGATCGAGGAAGCCTTCGAGGGATGGTGCACCGAGTTGGAAGCCATTGAAGTCTATGGATGCAACAGCCGTGGCCGACTTGGTACACCACTGAAAGCCTCAGGTCTTCAAATATCAAAACCTCTGCTTCAACAGGCAAAAGAGATGATCGCTGAGCATAACATTGACTATGGCGTGGACAACGGAAGAAGAGAGCAGGTTGCCGAACAGAAACAGCAAAACACTGAGAGAGGTGACAAAATCAGACCAAGATTCATAAACCAGCTTGTTATATATAAGAGAGTTGGCAAAAAGAAGAGGGGATGCTCTAAACGCTTTGGGATCAAGCAGATCATACATTATTCTGTGAGTTTTAAAGAGCAGCAGTCTTATATTGAAGGATCGGATAGGTCTTATGAAAGTCAACTATTGTTCTCTATTTTAGAGTCACCTTTTTGCCCATTGGATTCCACTCTTAAGATGATAATGATTGCGTTACTGCGTACAGCTGTGTAG

Protein sequence

MNDRFIRFRSAQTISGTIPYSRFPAKFNCSTFFKQAKEKGNGPVKRRKSKSCAKSRGGTDPVKKLNRRSKKIRELGNVRGDGACKFVGIGMKHSNVRELIEEAFEGWCTELEAIEVYGCNSRGRLGTPLKASGLQISKPLLQQAKEMIAEHNIDYGVDNGRREQVAEQKQQNTERGDKIRPRFINQLVIYKRVGKKKRGCSKRFGIKQIIHYSVSFKEQQSYIEGSDRSYESQLLFSILESPFCPLDSTLKMIMIALLRTAV
Homology
[Close]
BLAST of Carg10614 vs. NCBI nr
Match: KAG7037791.1 (hypothetical protein SDJN02_01422 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 518.1 bits (1333), Expect = 4.5e-143
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0 

Query: 1   MNDRFIRFRSAQTISGTIPYSRFPAKFNCSTFFKQAKEKGNGPVKRRKSKSCAKSRGGTD 60
           MNDRFIRFRSAQTISGTIPYSRFPAKFNCSTFFKQAKEKGNGPVKRRKSKSCAKSRGGTD
Sbjct: 1   MNDRFIRFRSAQTISGTIPYSRFPAKFNCSTFFKQAKEKGNGPVKRRKSKSCAKSRGGTD 60

Query: 61  PVKKLNRRSKKIRELGNVRGDGACKFVGIGMKHSNVRELIEEAFEGWCTELEAIEVYGCN 120
           PVKKLNRRSKKIRELGNVRGDGACKFVGIGMKHSNVRELIEEAFEGWCTELEAIEVYGCN
Sbjct: 61  PVKKLNRRSKKIRELGNVRGDGACKFVGIGMKHSNVRELIEEAFEGWCTELEAIEVYGCN 120

Query: 121 SRGRLGTPLKASGLQISKPLLQQAKEMIAEHNIDYGVDNGRREQVAEQKQQNTERGDKIR 180
           SRGRLGTPLKASGLQISKPLLQQAKEMIAEHNIDYGVDNGRREQVAEQKQQNTERGDKIR
Sbjct: 121 SRGRLGTPLKASGLQISKPLLQQAKEMIAEHNIDYGVDNGRREQVAEQKQQNTERGDKIR 180

Query: 181 PRFINQLVIYKRVGKKKRGCSKRFGIKQIIHYSVSFKEQQSYIEGSDRSYESQLLFSILE 240
           PRFINQLVIYKRVGKKKRGCSKRFGIKQIIHYSVSFKEQQSYIEGSDRSYESQLLFSILE
Sbjct: 181 PRFINQLVIYKRVGKKKRGCSKRFGIKQIIHYSVSFKEQQSYIEGSDRSYESQLLFSILE 240

Query: 241 SPFCPLDSTLKMIMIALLRTAV 263
           SPFCPLDSTLKMIMIALLRTAV
Sbjct: 241 SPFCPLDSTLKMIMIALLRTAV 262

The following BLAST results are available for this feature:
BLAST of Carg10614 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037791.14.5e-143100.00hypothetical protein SDJN02_01422 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg10614 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10614 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10614 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10614-RACarg10614-RAmRNA