Carg10582 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10582
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein MIZU-KUSSEI 1
Location	Carg_Chr01: 12466813 .. 12467097 (+)
RNA-Seq Expression	Carg10582
Synteny	Carg10582

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAACAATCTCCCACTCCGGCCCATCCGCCACACCTCCAACCGCTCCAAACCCTCCTCTTCCGGCGGAGGAACCAGCACCGGTAGCGGAGGGCTTCTCAAAATGTTCAAATTATTCCCCACGTTGAGCTCCGGGTATAAAATGGTAGCCCTTCTCGGCCGCCCACGGAAGCCCCTTTTGAAAGACAACGCCACCACAGGCACCATCTTCGGGTACCGGAAGGGGAGAGTGGAGCTTGGCGATTCAAGAGGACCCTCATTGCCCGCCGATATTCGTGTTTGA

mRNA sequence

ATGCCAAACAATCTCCCACTCCGGCCCATCCGCCACACCTCCAACCGCTCCAAACCCTCCTCTTCCGGCGGAGGAACCAGCACCGGTAGCGGAGGGCTTCTCAAAATGTTCAAATTATTCCCCACGTTGAGCTCCGGGTATAAAATGGTAGCCCTTCTCGGCCGCCCACGGAAGCCCCTTTTGAAAGACAACGCCACCACAGGCACCATCTTCGGGTACCGGAAGGGGAGAGTGGAGCTTGGCGATTCAAGAGGACCCTCATTGCCCGCCGATATTCGTGTTTGA

Coding sequence (CDS)

ATGCCAAACAATCTCCCACTCCGGCCCATCCGCCACACCTCCAACCGCTCCAAACCCTCCTCTTCCGGCGGAGGAACCAGCACCGGTAGCGGAGGGCTTCTCAAAATGTTCAAATTATTCCCCACGTTGAGCTCCGGGTATAAAATGGTAGCCCTTCTCGGCCGCCCACGGAAGCCCCTTTTGAAAGACAACGCCACCACAGGCACCATCTTCGGGTACCGGAAGGGGAGAGTGGAGCTTGGCGATTCAAGAGGACCCTCATTGCCCGCCGATATTCGTGTTTGA

Protein sequence

MPNNLPLRPIRHTSNRSKPSSSGGGTSTGSGGLLKMFKLFPTLSSGYKMVALLGRPRKPLLKDNATTGTIFGYRKGRVELGDSRGPSLPADIRV

Homology

[Close]

BLAST of Carg10582 vs. NCBI nr
Match: KAG6608497.1 (hypothetical protein SDJN03_01839, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037823.1 hypothetical protein SDJN02_01454, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 190.3 bits (482), Expect = 7.7e-45
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MPNNLPLRPIRHTSNRSKPSSSGGGTSTGSGGLLKMFKLFPTLSSGYKMVALLGRPRKPL 60
          MPNNLPLRPIRHTSNRSKPSSSGGGTSTGSGGLLKMFKLFPTLSSGYKMVALLGRPRKPL
Sbjct: 1  MPNNLPLRPIRHTSNRSKPSSSGGGTSTGSGGLLKMFKLFPTLSSGYKMVALLGRPRKPL 60

Query: 61 LKDNATTGTIFGYRKGRVELGDSRGPSLPADIRV 95
          LKDNATTGTIFGYRKGRVELGDSRGPSLPADIRV
Sbjct: 61 LKDNATTGTIFGYRKGRVELGDSRGPSLPADIRV 94

[Close]

BLAST of Carg10582 vs. NCBI nr
Match: XP_023523363.1 (uncharacterized protein LOC111787578 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 136.3 bits (342), Expect = 1.3e-28
Identity = 71/95 (74.74%), Postives = 78/95 (82.11%), Query Frame = 0


Query: 1   MPNNLPLRPIRHTSNRSKPSSSGGGTSTGSGGLLKMFKLFPTLSSGYKMVALLGRPRKPL 60
           M N++ L  +RHTSNRSKPSSSGGGTSTGSGGLLK+FKLFP LSSG KMVALLGRPRKPL
Sbjct: 17  MENSVFLSLLRHTSNRSKPSSSGGGTSTGSGGLLKIFKLFPMLSSGCKMVALLGRPRKPL 76

Query: 61  LKDNATTGTIFGYRKGRVELGDSRGPSL-PADIRV 95
           LKDNA TGTIFGYRKG+V L     P   P ++RV
Sbjct: 77  LKDNAATGTIFGYRKGKVSLAIQEDPHCPPIEVRV 111

[Close]

BLAST of Carg10582 vs. NCBI nr
Match: XP_022976635.1 (protein MIZU-KUSSEI 1 [Cucurbita maxima])

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 63/86 (73.26%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 1  MPNNLPLRPIRHTSNRSKPSSSGGGTSTGSGGLLKMFKLFPTLSSGYKMVALLGRPRKPL 60
          M  ++ L  +RHTS R KPSSSGGG   G GGLLKMFKLFP LSSG KMVALLGRPRKPL
Sbjct: 10 MDKSVFLSLLRHTSKRPKPSSSGGG-GGGGGGLLKMFKLFPMLSSGCKMVALLGRPRKPL 69

Query: 61 LKDNATTGTIFGYRKGRVELGDSRGP 87
          LKD+ATTGTIFGYRKGRV L     P
Sbjct: 70 LKDHATTGTIFGYRKGRVSLAIQEDP 94

[Close]

BLAST of Carg10582 vs. NCBI nr
Match: XP_023536074.1 (protein MIZU-KUSSEI 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 113.6 bits (283), Expect = 9.2e-22
Identity = 62/86 (72.09%), Postives = 66/86 (76.74%), Query Frame = 0


Query: 1  MPNNLPLRPIRHTSNRSKPSSSGGGTSTGSGGLLKMFKLFPTLSSGYKMVALLGRPRKPL 60
          M  ++ L  +RHTS R K SSSGGG   G GGLLKMFKLFP LSSG KMVALLGRPRKPL
Sbjct: 10 MDKSVFLSLLRHTSKRPKSSSSGGG--GGGGGLLKMFKLFPMLSSGCKMVALLGRPRKPL 69

Query: 61 LKDNATTGTIFGYRKGRVELGDSRGP 87
          LKD+ATTGTIFGYRKGRV L     P
Sbjct: 70 LKDHATTGTIFGYRKGRVSLAIQEDP 93

[Close]

BLAST of Carg10582 vs. NCBI nr
Match: KAG7024235.1 (Protein MIZU-KUSSEI 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.8 bits (281), Expect = 1.6e-21
Identity = 62/87 (71.26%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 1  MPNNLPLRPIRHTSNRSKPSSS-GGGTSTGSGGLLKMFKLFPTLSSGYKMVALLGRPRKP 60
          M  ++ L  +RHTS R K SSS GGG   G GGLLKMFKLFP LSSG KMVALLGRPRKP
Sbjct: 1  MDKSVFLSLLRHTSKRPKSSSSGGGGGGGGGGGLLKMFKLFPMLSSGCKMVALLGRPRKP 60

Query: 61 LLKDNATTGTIFGYRKGRVELGDSRGP 87
          LLKD+ATTGTIFGYRKGRV L     P
Sbjct: 61 LLKDHATTGTIFGYRKGRVSLAIQEDP 87

[Close]

BLAST of Carg10582 vs. ExPASy TrEMBL
Match: A0A6J1IK06 (protein MIZU-KUSSEI 1 OS=Cucurbita maxima OX=3661 GN=LOC111476979 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.2e-23
Identity = 63/86 (73.26%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 1  MPNNLPLRPIRHTSNRSKPSSSGGGTSTGSGGLLKMFKLFPTLSSGYKMVALLGRPRKPL 60
          M  ++ L  +RHTS R KPSSSGGG   G GGLLKMFKLFP LSSG KMVALLGRPRKPL
Sbjct: 10 MDKSVFLSLLRHTSKRPKPSSSGGG-GGGGGGLLKMFKLFPMLSSGCKMVALLGRPRKPL 69

Query: 61 LKDNATTGTIFGYRKGRVELGDSRGP 87
          LKD+ATTGTIFGYRKGRV L     P
Sbjct: 70 LKDHATTGTIFGYRKGRVSLAIQEDP 94

[Close]

BLAST of Carg10582 vs. ExPASy TrEMBL
Match: A0A6J1FEY2 (protein MIZU-KUSSEI 1 OS=Cucurbita moschata OX=3662 GN=LOC111443333 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.3e-21
Identity = 62/89 (69.66%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 1  MPNNLPLRPIRHTSNRSKPSSS---GGGTSTGSGGLLKMFKLFPTLSSGYKMVALLGRPR 60
          M  ++ L  +RHTS R K SSS   GGG   G GGLLKMFKLFP LSSG KMVALLGRPR
Sbjct: 10 MDKSVFLSLLRHTSKRPKSSSSGGGGGGGGGGGGGLLKMFKLFPMLSSGCKMVALLGRPR 69

Query: 61 KPLLKDNATTGTIFGYRKGRVELGDSRGP 87
          KPLLKD+ATTGTIFGYRKGRV L     P
Sbjct: 70 KPLLKDHATTGTIFGYRKGRVSLAIQEDP 98

[Close]

BLAST of Carg10582 vs. ExPASy TrEMBL
Match: A0A5A7VFP8 (Protein MIZU-KUSSEI 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003660 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 60/90 (66.67%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 1  MPNNLPLRPIRHTSNRSKPSSSG----GGTSTGSGGLLKMFKLFPTLSSGYKMVALLGRP 60
          M N+  L  +RH + R K SSS     GG+  G GGLLKMFKLFP L+SG KMVALLGRP
Sbjct: 10 MDNSAFLPLLRHITKRPKSSSSSTTTTGGSGGGGGGLLKMFKLFPMLTSGCKMVALLGRP 69

Query: 61 RKPLLKDNATTGTIFGYRKGRVELGDSRGP 87
          RKPLLKDNATTGTIFGYRKGRV L     P
Sbjct: 70 RKPLLKDNATTGTIFGYRKGRVSLAIQEDP 99

[Close]

BLAST of Carg10582 vs. ExPASy TrEMBL
Match: A0A1S3BTD5 (protein MIZU-KUSSEI 1 OS=Cucumis melo OX=3656 GN=LOC103493515 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 60/90 (66.67%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 1  MPNNLPLRPIRHTSNRSKPSSSG----GGTSTGSGGLLKMFKLFPTLSSGYKMVALLGRP 60
          M N+  L  +RH + R K SSS     GG+  G GGLLKMFKLFP L+SG KMVALLGRP
Sbjct: 10 MDNSAFLPLLRHITKRPKSSSSSTTTTGGSGGGGGGLLKMFKLFPMLTSGCKMVALLGRP 69

Query: 61 RKPLLKDNATTGTIFGYRKGRVELGDSRGP 87
          RKPLLKDNATTGTIFGYRKGRV L     P
Sbjct: 70 RKPLLKDNATTGTIFGYRKGRVSLAIQEDP 99

[Close]

BLAST of Carg10582 vs. ExPASy TrEMBL
Match: A0A0A0L3H7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G638520 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.1e-19
Identity = 60/91 (65.93%), Postives = 66/91 (72.53%), Query Frame = 0


Query: 1   MPNNLPLRPIRHTSNRSKPSS----SGGGTSTGS-GGLLKMFKLFPTLSSGYKMVALLGR 60
           M N+  L  +RH + R K SS    + GG+  GS GGLLKMFKLFP L+SG KMVALLGR
Sbjct: 10  MDNSAFLPLLRHITRRPKSSSTSTTTNGGSGGGSGGGLLKMFKLFPMLTSGCKMVALLGR 69

Query: 61  PRKPLLKDNATTGTIFGYRKGRVELGDSRGP 87
           PRKPLLKDNATTGTIFGYRKGRV L     P
Sbjct: 70  PRKPLLKDNATTGTIFGYRKGRVSLAIQEDP 100

[Close]

BLAST of Carg10582 vs. TAIR 10
Match: AT5G42680.1 (Protein of unknown function, DUF617 )

HSP 1 Score: 78.6 bits (192), Expect = 3.0e-15
Identity = 47/87 (54.02%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 1  MPNNLPLRPIRHTSNRSKPSSSGGGTSTGSGGLLKMFKLFPTLSSGYKMVALLGR-PRKP 60
          M ++  L  +RHT       SS   + +  GG+LKMFKL P LSSG KMV LL R  R+P
Sbjct: 11 MDSSALLSLLRHTGTSMDSKSSKKSSGSIGGGVLKMFKLIPMLSSGCKMVNLLSRGHRRP 70

Query: 61 LLKDNATTGTIFGYRKGRVELGDSRGP 87
          LLKD ATTGTIFG+RKGRV L     P
Sbjct: 71 LLKDYATTGTIFGFRKGRVFLAIQEDP 97

[Close]

BLAST of Carg10582 vs. TAIR 10
Match: AT5G42680.2 (Protein of unknown function, DUF617 )

HSP 1 Score: 78.6 bits (192), Expect = 3.0e-15
Identity = 47/87 (54.02%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 1  MPNNLPLRPIRHTSNRSKPSSSGGGTSTGSGGLLKMFKLFPTLSSGYKMVALLGR-PRKP 60
          M ++  L  +RHT       SS   + +  GG+LKMFKL P LSSG KMV LL R  R+P
Sbjct: 11 MDSSALLSLLRHTGTSMDSKSSKKSSGSIGGGVLKMFKLIPMLSSGCKMVNLLSRGHRRP 70

Query: 61 LLKDNATTGTIFGYRKGRVELGDSRGP 87
          LLKD ATTGTIFG+RKGRV L     P
Sbjct: 71 LLKDYATTGTIFGFRKGRVFLAIQEDP 97

The following BLAST results are available for this feature:

BLAST of Carg10582 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608497.1	7.7e-45	100.00	hypothetical protein SDJN03_01839, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023523363.1	1.3e-28	74.74	uncharacterized protein LOC111787578 [Cucurbita pepo subsp. pepo]	[more]
XP_022976635.1	1.1e-22	73.26	protein MIZU-KUSSEI 1 [Cucurbita maxima]	[more]
XP_023536074.1	9.2e-22	72.09	protein MIZU-KUSSEI 1 [Cucurbita pepo subsp. pepo]	[more]
KAG7024235.1	1.6e-21	71.26	Protein MIZU-KUSSEI 1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Carg10582 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg10582 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IK06	5.2e-23	73.26	protein MIZU-KUSSEI 1 OS=Cucurbita maxima OX=3661 GN=LOC111476979 PE=4 SV=1	[more]
A0A6J1FEY2	1.3e-21	69.66	protein MIZU-KUSSEI 1 OS=Cucurbita moschata OX=3662 GN=LOC111443333 PE=4 SV=1	[more]
A0A5A7VFP8	1.1e-20	66.67	Protein MIZU-KUSSEI 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13...	[more]
A0A1S3BTD5	1.1e-20	66.67	protein MIZU-KUSSEI 1 OS=Cucumis melo OX=3656 GN=LOC103493515 PE=4 SV=1	[more]
A0A0A0L3H7	2.1e-19	65.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G638520 PE=4 SV=1	[more]

BLAST of Carg10582 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42680.1	3.0e-15	54.02	Protein of unknown function, DUF617	[more]
AT5G42680.2	3.0e-15	54.02	Protein of unknown function, DUF617	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR31696:SF79	SUBFAMILY NOT NAMED	coord: 11..81
IPR006460	Protein MIZU-KUSSEI 1-like, plant	PANTHER	PTHR31696	PROTEIN MIZU-KUSSEI 1	coord: 11..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10582-RA	Carg10582-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010274	hydrotropism