Carg10544 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10544
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	50S ribosomal protein L17
Location	Carg_Chr03: 7550860 .. 7554153 (+)
RNA-Seq Expression	Carg10544
Synteny	Carg10544

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCCCGAAACGAAACTCGAGGGTTTTTCATCTTCGAACTCAGTCTTTGCTTTCCTTCCGCCATTAACAATGACTAAGTTCAGAAAGCTTGGTCGAGATGCAGCTCAACGGGTGTCTATGCTGAGGTTGCTCACTTCTTTCAGCAACTATCAATTAAGTTTTATGTCCCAATTTTTGAACGTCTGTTCTCTTCTTTTGGCAGAACAATGGTTTCTCAGTTGGTGAAGCACGAGCGGATTGAGACTACTGTTCCAAAGGTATCCCTATTGACTTTCTTCTTATCATTTATTGGAATCTCGATGTTTAACTTTTCTGAATTTTGCTTTTCCAAGTGATGCATTAGCTTCATGTTCACCCGAACCCCCCTTCGGTTTCGTTGTTAGATTATTTTATCTTACTGAACTCTGAAGTTAATCGTAGGTTTGTTGCATTGTAAATGGAATTATCGGGTGGTTGAAAATTTTGACGTCTTGTATTGTCTGAACTGAGCTTAGGTTTTGTTTTTTCTTAGAATCTGAATTTACAGATTTGGTTAGTTACATATTTGTCATCTCTTTCCCCTTGGGTTGCATCTTTTCTGTTCCTTCAAATTTTAACCCCAAGCTTACTGTTGAAGGATATGTTTCATTCCTTGAGATCAAGTATAGATTTTTTTTTATTTTTTTTTATTTAGAACATCAACACTACTATGAATTTATGACCATATTTTCAACTTATTTCTGCATTTGTCTTTCAACCTGTTTGCAGGCTAAAGAAATTCGGCGGCTTGCTGATAACATGGTTCAATTTGGAAAAGAGGTCCGTAGAACTTAACTTTTGTTTTCCCTTCTCAATGTTTTATTTATTTTTTTTCTTCTTTTCCCCTCACTGGGGAGGGTGTGTTCTGCCTCCAAATTTTGATATAGGTTGTATGCTAAGAAGCACAGACAGTTTAGTCTGGCTCACATGTTCATGTTTGACAGACACTCCAACACTTATTGGACACTCGGTAACACTAGATTTGTATTAGATACTAGTTGTAGAAAGCCAATATTAATCCAATATTTGTAAACTTCTTTAGCATACTAAATAGACAAATAATACTATAGGACAAAAATAAATTTTTAGTGTAAAATACATCAAATTCATTGTATATAAATCCATTAAACTTGTTGAATTTAAAGTTTTCATACTGTATAAAAAGGATGTATATTTAAAAAAAAAAAAGAATGCAAATTTTAACAAATGTGTCCTTACTGTGTGTGTCTGTGTCCTAGATTTGTAAAAAATGACATGTCATTGTGTTTGTATCGTATCCTTATCCATGCTTCATAGGTTGGATTCTTTATCAATTAGATTATATATGAAATTATATTTCAATTATTAGATGAAGGGCTATTTGGTAAAGGATAAATGCAAATGCCATGGTTCAAGATTTAGCTGATCTAAAATGAGTATGATGTAATAATTCGAGGGAGAGAAAAAGACAAGTCTCGGAGGTCAAGTTTTGCAATTCAATTCTAATGCAGGAAGCAAGAGATGGTATTGGGCATGGGCTTGATAAATATGTTTGCCGGTAACGGAGGAAAATTGGATTTGGTCTGCAACCAACATTGGAAGCTAAGCCAAATAAGAAAGAGGCATCTCCAATTAATGAGTTAGACCACTAAAATTTGGGCCCAGGATGATGCCTTTATTTCAAATCATTCTTATTTCAGTATTAGTAATCCTCAAAAGATGGAAACCATAAATTAATTACGGGATATCAATATGGAGAAAGAAAGACCTTCGGAAGGAAGATTTGTTGTAACTATTTGAAAGTGAAGAGGAAGCCGTGGTTTGAAGTTTGTTGGATGTTGTTGAAATTAAAGTAGCAAAGCAGTTCCAGAGACATCATATAATGTTTGATTTTAAAATGTAATGACTCTGCGTTACATAAAGGTGTATATAGTTGGGTTGTCTTCTGCTTACTCTTATTTGCACCAAGGACACTGTCATTTACTTCAGACTCTAACTTGCTGTGATCGAGAAGAAAACCAATGAAATCAACCACAAACAGAGTTCTTGTAAAGGAATTATTAAGTTATCTTTGAAGTTGATTAAACTGTTTTTGCTTCAAAGATAGTTTAATAATTATTTTACACCTTGAATTGCGTGCAAAGACACTCTTCCTGTGTTTTGTTCTCGAAAGGGTGCACTCTCTATAGGAGGCTTGAGAAGGATTTGGATCTTCTGTTTGAGACTGCCAGTTTGCTCTTCATATTCGGAGTTGATGGCTTAGAGATTGATGGTAGAACCCAGATTGGGGGTGTTTTTGCGCTCTCCTTTCAAGGAGCATGGTAGAGTTTTGTGGTAGGCCAATTTCTTTGTGTTTTGTGGGGATATCTGGTTTGGGAGGAATGATGGATTTTTAGAAAGGTCAAGAGATCAATTGATGATGTTGGTCAAGTGACTAGATTTAATGCCTCTTTCTGGACATCAATCACTAAATCTTTTTATAATTATGAGCTTTGTCTTGTTCTTGGGACTGTCCTTTTTTGTAGTTAGAGGCGTACTCTATTTTTTGTGTGTGTGTTAGGGCGGGTGTTTTATGCATGTCCTTGTATATTCTTTCATTTTTCTTAATGAAATCATGGTTTATTATAAGAAAATCTTTATTTCACTATTTTCATCTTATTCATAAAAGATAAACATGTTGTGACTTTTTCCCCCCCCAATCTAGGGTTCCCTTTGTGCTTCAAGGCATGCTGCTGCATTTGTAAGAGGCGATGATGTCCTTCACAAACTATTCACAGAACTGGCTTATCGATACAAGTGAGTCCCAAATTTGTTAACCCGTAGTTCATGCTTTTATTTATAAGTATTAAATTGGACGGATGTTATGTTCAACAGAGATAGAGCTGGTGGATATACAAGACTTCTTCGGACGCGTATACGTGTTGGCGATGCTGCACCAATGGCTTATATAGAGTAAGTGCTTAACATCGACAGCTGCTATGTTTCTTCAGTTATACAGCTGTATTAAATAATGGATAGATGATGTACGAAACGGTTATAAATAAATACTGCTGGTACAGTTTTTAATTGATTATTTGTGCTGTTGATACAAATTTATTGAAAGTTGAATCAATGTATGAATTCATAATTTCTCTATGCTATCGATACAGATTTATTGATAGAGAAAATGAGCTGAGACAGTCGAAGCCTCCAAATCCCCAACCACCTCAGAAGGCTCCAATGGATCCATGGACAAGATCACGGCTTAGCAAGCAGTTCGCACCACCCAAAGAGATCAAATCTGACTCTGAAATCTGA

mRNA sequence

CCCCCCGAAACGAAACTCGAGGGTTTTTCATCTTCGAACTCAGTCTTTGCTTTCCTTCCGCCATTAACAATGACTAAGTTCAGAAAGCTTGGTCGAGATGCAGCTCAACGGGTGTCTATGCTGAGAACAATGGTTTCTCAGTTGGTGAAGCACGAGCGGATTGAGACTACTGTTCCAAAGGCTAAAGAAATTCGGCGGCTTGCTGATAACATGGTTCAATTTGGAAAAGAGGGTTCCCTTTGTGCTTCAAGGCATGCTGCTGCATTTGTAAGAGGCGATGATGTCCTTCACAAACTATTCACAGAACTGGCTTATCGATACAAAGATAGAGCTGGTGGATATACAAGACTTCTTCGGACGCGTATACGTGTTGGCGATGCTGCACCAATGGCTTATATAGAATTTATTGATAGAGAAAATGAGCTGAGACAGTCGAAGCCTCCAAATCCCCAACCACCTCAGAAGGCTCCAATGGATCCATGGACAAGATCACGGCTTAGCAAGCAGTTCGCACCACCCAAAGAGATCAAATCTGACTCTGAAATCTGA

Coding sequence (CDS)

ATGACTAAGTTCAGAAAGCTTGGTCGAGATGCAGCTCAACGGGTGTCTATGCTGAGAACAATGGTTTCTCAGTTGGTGAAGCACGAGCGGATTGAGACTACTGTTCCAAAGGCTAAAGAAATTCGGCGGCTTGCTGATAACATGGTTCAATTTGGAAAAGAGGGTTCCCTTTGTGCTTCAAGGCATGCTGCTGCATTTGTAAGAGGCGATGATGTCCTTCACAAACTATTCACAGAACTGGCTTATCGATACAAAGATAGAGCTGGTGGATATACAAGACTTCTTCGGACGCGTATACGTGTTGGCGATGCTGCACCAATGGCTTATATAGAATTTATTGATAGAGAAAATGAGCTGAGACAGTCGAAGCCTCCAAATCCCCAACCACCTCAGAAGGCTCCAATGGATCCATGGACAAGATCACGGCTTAGCAAGCAGTTCGCACCACCCAAAGAGATCAAATCTGACTCTGAAATCTGA

Protein sequence

MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI

Homology

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BLAST of Carg10544 vs. NCBI nr
Match: KAG7034436.1 (rplQ [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 313.9 bits (803), Expect = 7.8e-82
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS 60
           MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS
Sbjct: 1   MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS 60

Query: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
           RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 160
           QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 159

[Close]

BLAST of Carg10544 vs. NCBI nr
Match: XP_023533917.1 (uncharacterized protein LOC111795618 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 310.8 bits (795), Expect = 6.6e-81
Identity = 157/159 (98.74%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS 60
           MTKFRKLGRDAA R+SMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS
Sbjct: 1   MTKFRKLGRDAAHRMSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS 60

Query: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
           RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 160
           QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 159

[Close]

BLAST of Carg10544 vs. NCBI nr
Match: XP_022949983.1 (uncharacterized protein LOC111453209 [Cucurbita moschata])

HSP 1 Score: 309.3 bits (791), Expect = 1.9e-80
Identity = 157/159 (98.74%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS 60
           MTKFRKLGRDAA+RVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS
Sbjct: 1   MTKFRKLGRDAAERVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS 60

Query: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
           RHAAAFVRGDDVLHKLFTELAYRYK RAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RHAAAFVRGDDVLHKLFTELAYRYKYRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 160
           QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 159

[Close]

BLAST of Carg10544 vs. NCBI nr
Match: XP_022947437.1 (uncharacterized protein LOC111451296 [Cucurbita moschata])

HSP 1 Score: 306.2 bits (783), Expect = 1.6e-79
Identity = 154/157 (98.09%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS 60
           MTKFRKLGRDAA R+SMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS
Sbjct: 1   MTKFRKLGRDAAHRMSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS 60

Query: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
           RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDS 158
           QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSD+
Sbjct: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDT 157

[Close]

BLAST of Carg10544 vs. NCBI nr
Match: XP_022979157.1 (uncharacterized protein LOC111478877 [Cucurbita maxima])

HSP 1 Score: 303.9 bits (777), Expect = 8.1e-79
Identity = 154/159 (96.86%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS 60
           MTKFRKLGR AA R+SMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQFGKEGSLCA+
Sbjct: 21  MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKEGSLCAA 80

Query: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
           RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 81  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 140

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 160
           QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 141 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 179

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BLAST of Carg10544 vs. ExPASy Swiss-Prot
Match: A0L5Z9 (50S ribosomal protein L17 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) OX=156889 GN=rplQ PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.1e-29
Identity = 61/113 (53.98%), Postives = 85/113 (75.22%), Query Frame = 0


Query: 5   RKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAA 64
           R+L RD + R +M++ M+  L KHERIETTVP+AKE+R +A+ ++  GK G L A R A 
Sbjct: 8   RRLSRDTSHRQAMIKNMLVSLFKHERIETTVPRAKELRPVAEKVITLGKRGDLHARRQAL 67

Query: 65  AFVRGD-DVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRE 117
           + + GD +V+HKLFT+LA R KDR GGYTR+L+TR R GD APM++IE ++R+
Sbjct: 68  SILNGDKEVVHKLFTDLAERNKDRQGGYTRILKTRFRYGDCAPMSFIELVERD 120

[Close]

BLAST of Carg10544 vs. ExPASy Swiss-Prot
Match: A5FZU0 (50S ribosomal protein L17 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rplQ PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-25
Identity = 62/125 (49.60%), Postives = 83/125 (66.40%), Query Frame = 0


Query: 5   RKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAA 64
           RKLG  A+ R +M R M   L+KHE+I TT+PKAKE+R +A+ ++  GK G L A R A 
Sbjct: 8   RKLGVTASHRAAMFRNMAVALLKHEQITTTLPKAKELRPVAEKLITLGKRGGLHARRQAH 67

Query: 65  AFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR-QSK 124
           A +R D ++ KLF  LA RYK+R GGYTR+L+  +R GDAA MA IE +DR+   + Q  
Sbjct: 68  ALLRDDVIVAKLFDSLADRYKERQGGYTRVLKAGMRYGDAADMAVIELVDRDPAAKGQDS 127

Query: 125 PPNPQ 129
            P P+
Sbjct: 128 GPKPE 132

[Close]

BLAST of Carg10544 vs. ExPASy Swiss-Prot
Match: Q8RE45 (50S ribosomal protein L17 OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355) OX=190304 GN=rplQ PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-25
Identity = 55/110 (50.00%), Postives = 82/110 (74.55%), Query Frame = 0


Query: 4   FRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHA 63
           +RKLGR A  R +ML+ M   L+K ERIETTV +AKE+R+ A+ M+ FGK+ +L + R+A
Sbjct: 7   YRKLGRRADHRKAMLKNMTISLIKAERIETTVTRAKELRKFAERMITFGKKNTLASRRNA 66

Query: 64  AAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFI 114
            AF+R ++V+ K+F E+A +Y +R GGYTR+++T +R GD+A MA IE +
Sbjct: 67  FAFLRDEEVVAKIFNEIAPKYAERNGGYTRIIKTSVRKGDSAEMAIIELV 116

[Close]

BLAST of Carg10544 vs. ExPASy Swiss-Prot
Match: B3E858 (50S ribosomal protein L17 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) OX=398767 GN=rplQ PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-25
Identity = 57/110 (51.82%), Postives = 79/110 (71.82%), Query Frame = 0


Query: 5   RKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAA 64
           R+LGR  + R++M R MV+ L+ HERI TT  KAKEIR +A+ M+  GK G L A R AA
Sbjct: 8   RRLGRTTSHRIAMFRNMVTSLLNHERIVTTDAKAKEIRSVAEKMITLGKRGDLHAHRQAA 67

Query: 65  AFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFID 115
           A++R   V+ KLF+ +A RYKDRAGGYTR+++   R+GDAA ++ IE ++
Sbjct: 68  AYIREKSVVTKLFSTIAPRYKDRAGGYTRIIKLGQRLGDAASLSVIELVE 117

[Close]

BLAST of Carg10544 vs. ExPASy Swiss-Prot
Match: Q749B4 (50S ribosomal protein L17 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=rplQ PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.1e-25
Identity = 62/148 (41.89%), Postives = 88/148 (59.46%), Query Frame = 0


Query: 5   RKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAA 64
           R+LGR  + R++M R MV+ L  HERI TT  KAKE+R +A+ M+  GK G L A R AA
Sbjct: 8   RRLGRTTSHRIAMFRNMVTSLFAHERITTTDAKAKELRSIAEKMITLGKRGDLHAVRQAA 67

Query: 65  AFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELRQSKP 124
           +++R   V+ KLF+ +A RYK+R GGYTR+++  IR GD AP++ IE ++ + E +  K 
Sbjct: 68  SYIRDKKVVTKLFSTIAPRYKERDGGYTRIIKLGIRPGDCAPLSVIELVEEQFEKKVKKS 127

Query: 125 PNPQPPQKAPMDPWTRSRLSKQFAPPKE 153
               P Q     P          A P+E
Sbjct: 128 KPTAPAQAVATKPAVEETREAAAAQPQE 155

[Close]

BLAST of Carg10544 vs. ExPASy TrEMBL
Match: A0A6J1GDM4 (uncharacterized protein LOC111453209 OS=Cucurbita moschata OX=3662 GN=LOC111453209 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 9.3e-81
Identity = 157/159 (98.74%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS 60
           MTKFRKLGRDAA+RVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS
Sbjct: 1   MTKFRKLGRDAAERVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS 60

Query: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
           RHAAAFVRGDDVLHKLFTELAYRYK RAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RHAAAFVRGDDVLHKLFTELAYRYKYRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 160
           QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 159

[Close]

BLAST of Carg10544 vs. ExPASy TrEMBL
Match: A0A6J1G6G2 (uncharacterized protein LOC111451296 OS=Cucurbita moschata OX=3662 GN=LOC111451296 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 7.9e-80
Identity = 154/157 (98.09%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 1   MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS 60
           MTKFRKLGRDAA R+SMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS
Sbjct: 1   MTKFRKLGRDAAHRMSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS 60

Query: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
           RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDS 158
           QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSD+
Sbjct: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDT 157

[Close]

BLAST of Carg10544 vs. ExPASy TrEMBL
Match: A0A6J1IN09 (uncharacterized protein LOC111478877 OS=Cucurbita maxima OX=3661 GN=LOC111478877 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 3.9e-79
Identity = 154/159 (96.86%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS 60
           MTKFRKLGR AA R+SMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQFGKEGSLCA+
Sbjct: 21  MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKEGSLCAA 80

Query: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
           RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 81  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 140

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 160
           QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 141 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 179

[Close]

BLAST of Carg10544 vs. ExPASy TrEMBL
Match: A0A6J1BS83 (uncharacterized protein LOC111005280 OS=Momordica charantia OX=3673 GN=LOC111005280 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 3.4e-75
Identity = 147/159 (92.45%), Postives = 151/159 (94.97%), Query Frame = 0


Query: 1   MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS 60
           MTKFRKLGR    R+SMLRTMVSQLVKHERIETTV KAKEIRRLADNMVQFGKE SLCA+
Sbjct: 1   MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAA 60

Query: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
           R AAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 160
           QSKPPNPQP QKAP+DPWTRSRLSKQFAPPKEIKSDSE+
Sbjct: 121 QSKPPNPQPQQKAPLDPWTRSRLSKQFAPPKEIKSDSEV 159

[Close]

BLAST of Carg10544 vs. ExPASy TrEMBL
Match: A0A2N9GBE6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24662 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.7e-72
Identity = 141/159 (88.68%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 1   MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS 60
           MTKFRKL R    R+SM RTMVSQLVKHERIETTV KAKEIRRLADNMVQ GKEGSLCA+
Sbjct: 1   MTKFRKLNRPTGHRMSMFRTMVSQLVKHERIETTVAKAKEIRRLADNMVQLGKEGSLCAA 60

Query: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
           R AAAFVRGDDV+HKLFTELAYRYKDRAGGYTR+LRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 160
           QSKPP PQPPQKAP+DPWTRSRLSKQFAPPKE +S+SEI
Sbjct: 121 QSKPPTPQPPQKAPLDPWTRSRLSKQFAPPKEDRSESEI 159

[Close]

BLAST of Carg10544 vs. TAIR 10
Match: AT5G09770.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 264.2 bits (674), Expect = 6.6e-71
Identity = 134/160 (83.75%), Postives = 145/160 (90.62%), Query Frame = 0


Query: 1   MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS 60
           MTKFRKLGR A  R+SMLRTMVSQLVKHERIETTV KAKE+RRLADNM+Q GKEGSL A+
Sbjct: 1   MTKFRKLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAA 60

Query: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
           R AA FVRGDDVLHK+FTELA+RYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIK-SDSEI 160
           QSKP  PQPPQ+ P+DPW RSRL++QFAPPKE K  DSE+
Sbjct: 121 QSKPATPQPPQRVPLDPWERSRLTRQFAPPKEEKIPDSEL 160

[Close]

BLAST of Carg10544 vs. TAIR 10
Match: AT5G64650.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 260.0 bits (663), Expect = 1.2e-69
Identity = 130/160 (81.25%), Postives = 145/160 (90.62%), Query Frame = 0


Query: 1   MTKFRKLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCAS 60
           MTKFRKLGR A  R+SMLRTMVSQLV+HERIETTV KAKE+RRLADNM+Q GKEGSL A+
Sbjct: 1   MTKFRKLGRPAGHRMSMLRTMVSQLVQHERIETTVTKAKEVRRLADNMIQLGKEGSLAAA 60

Query: 61  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120
           R AA FVRGDDVLHK+FTELA+RYKDRAGGYTR+LRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIK-SDSEI 160
           QSKP  PQPP + P+DPW RSRL++Q+APPKE K SDS++
Sbjct: 121 QSKPATPQPPPRVPLDPWARSRLTRQYAPPKEEKTSDSDL 160

[Close]

BLAST of Carg10544 vs. TAIR 10
Match: AT3G54210.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 99.4 bits (246), Expect = 2.8e-21
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 6   KLGRDAAQRVSMLRTMVSQLVKHERIETTVPKAKEIRRLADNMVQFGKEGSLCASRHAAA 65
           KL R   QR ++LR + +QL+KH RI+TT  +A  +R+  D M+   K+GSL   R A  
Sbjct: 104 KLNRPPDQRKALLRGLTTQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALG 163

Query: 66  FVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFI 114
           ++    ++H LF E+  RY +R GGYTR++RT  R GD APMAYIE +
Sbjct: 164 YIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211

The following BLAST results are available for this feature:

BLAST of Carg10544 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034436.1	7.8e-82	100.00	rplQ [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023533917.1	6.6e-81	98.74	uncharacterized protein LOC111795618 [Cucurbita pepo subsp. pepo]	[more]
XP_022949983.1	1.9e-80	98.74	uncharacterized protein LOC111453209 [Cucurbita moschata]	[more]
XP_022947437.1	1.6e-79	98.09	uncharacterized protein LOC111451296 [Cucurbita moschata]	[more]
XP_022979157.1	8.1e-79	96.86	uncharacterized protein LOC111478877 [Cucurbita maxima]	[more]

BLAST of Carg10544 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0L5Z9	6.1e-29	53.98	50S ribosomal protein L17 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 1...	[more]
A5FZU0	1.1e-25	49.60	50S ribosomal protein L17 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rpl...	[more]
Q8RE45	1.1e-25	50.00	50S ribosomal protein L17 OS=Fusobacterium nucleatum subsp. nucleatum (strain AT...	[more]
B3E858	1.8e-25	51.82	50S ribosomal protein L17 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278...	[more]
Q749B4	3.1e-25	41.89	50S ribosomal protein L17 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 1...	[more]

BLAST of Carg10544 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GDM4	9.3e-81	98.74	uncharacterized protein LOC111453209 OS=Cucurbita moschata OX=3662 GN=LOC1114532...	[more]
A0A6J1G6G2	7.9e-80	98.09	uncharacterized protein LOC111451296 OS=Cucurbita moschata OX=3662 GN=LOC1114512...	[more]
A0A6J1IN09	3.9e-79	96.86	uncharacterized protein LOC111478877 OS=Cucurbita maxima OX=3661 GN=LOC111478877...	[more]
A0A6J1BS83	3.4e-75	92.45	uncharacterized protein LOC111005280 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A2N9GBE6	2.7e-72	88.68	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24662 PE=3 SV=1	[more]

BLAST of Carg10544 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09770.1	6.6e-71	83.75	Ribosomal protein L17 family protein	[more]
AT5G64650.1	1.2e-69	81.25	Ribosomal protein L17 family protein	[more]
AT3G54210.1	2.8e-21	45.37	Ribosomal protein L17 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000456	Ribosomal protein L17	PFAM	PF01196	Ribosomal_L17	coord: 17..113 e-value: 7.6E-32 score: 110.2
IPR000456	Ribosomal protein L17	TIGRFAM	TIGR00059	TIGR00059	coord: 4..114 e-value: 8.4E-40 score: 133.6
IPR000456	Ribosomal protein L17	PANTHER	PTHR14413	RIBOSOMAL PROTEIN L17	coord: 1..156
IPR000456	Ribosomal protein L17	HAMAP	MF_01368	Ribosomal_L17	coord: 2..113 score: 23.789665
IPR036373	Ribosomal protein L17 superfamily	GENE3D	3.90.1030.10	Ribosomal protein L17	coord: 1..113 e-value: 1.1E-43 score: 150.3
IPR036373	Ribosomal protein L17 superfamily	SUPERFAMILY	64263	Prokaryotic ribosomal protein L17	coord: 3..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..159
None	No IPR available	PANTHER	PTHR14413:SF22	BNAA09G06940D PROTEIN	coord: 1..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10544-RA	Carg10544-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome