Carg10541 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10541
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	transcription factor IND-like
Location	Carg_Chr03: 7568044 .. 7568816 (+)
RNA-Seq Expression	Carg10541
Synteny	Carg10541

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCCCCATCACCTCTCAAACCCTTCTCCCCATCTCCATCACTCCGCCATGGAAGACCATCATATCCTTCACCGTCATCACCACGTCCACGTCCACGACCCTGACCCTGACCCTGACCCTGATTCCATTTGGTCGTCGTTGTTGCCTTTTCATCTCCCCGACCCTCATCAACAATTCCCTAGCTCCTCAACCCACCTCTTGATCAGCTACGGTATGTTCACTACTCCTACTTTGATATCATGTTAAATTATCGATCATCATATGTTTAATTCTTTTTTTTTTTTTTTTTTGTATTGTGTATAGCTACTCCGAGTTCTAGGGTAGATAATGATGAAGAGCCGGAAGAAGAGCTTGGTGCCATGAAAGAGATGATGTATAAGATCGCCGCGATGCAACCGGTGGATATCGATCCTTCGACTATTCGAAAGCCTAAGCGTCGAAATGTACGGATTAGCGATGACCCGCAAAGCATTGCAGCTCGTCTTCGACGAGAGAGGATCAGTGAGAAGATCAGAATTCTTCAAAGGCTTGTGCCTGGTGGGACGAAGATGGACACAGCTTCAATGCTGGATGAAGCAATTCGCTATGTCAAATTCTTAAAGAGGCAAATCCGGTTGCTGCAGTCAAGTGATCAGCCGCAACAGCCAAGCACTGACGGCGGAGCCGCCGCTGGAGGGTGGCCTCTTACATTCCATAAGGCTGATGGCTCAGCCTCCTCGTCCACGTCCATGGAGACTACGCCTGCCATTATTACACCATCAGGATGGTGA

mRNA sequence

ATGGAGCCCCATCACCTCTCAAACCCTTCTCCCCATCTCCATCACTCCGCCATGGAAGACCATCATATCCTTCACCGTCATCACCACGTCCACGTCCACGACCCTGACCCTGACCCTGACCCTGATTCCATTTGGTCGTCGTTGTTGCCTTTTCATCTCCCCGACCCTCATCAACAATTCCCTAGCTCCTCAACCCACCTCTTGATCAGCTACGCTACTCCGAGTTCTAGGGTAGATAATGATGAAGAGCCGGAAGAAGAGCTTGGTGCCATGAAAGAGATGATGTATAAGATCGCCGCGATGCAACCGGTGGATATCGATCCTTCGACTATTCGAAAGCCTAAGCGTCGAAATGTACGGATTAGCGATGACCCGCAAAGCATTGCAGCTCGTCTTCGACGAGAGAGGATCAGTGAGAAGATCAGAATTCTTCAAAGGCTTGTGCCTGGTGGGACGAAGATGGACACAGCTTCAATGCTGGATGAAGCAATTCGCTATGTCAAATTCTTAAAGAGGCAAATCCGGTTGCTGCAGTCAAGTGATCAGCCGCAACAGCCAAGCACTGACGGCGGAGCCGCCGCTGGAGGGTGGCCTCTTACATTCCATAAGGCTGATGGCTCAGCCTCCTCGTCCACGTCCATGGAGACTACGCCTGCCATTATTACACCATCAGGATGGTGA

Coding sequence (CDS)

ATGGAGCCCCATCACCTCTCAAACCCTTCTCCCCATCTCCATCACTCCGCCATGGAAGACCATCATATCCTTCACCGTCATCACCACGTCCACGTCCACGACCCTGACCCTGACCCTGACCCTGATTCCATTTGGTCGTCGTTGTTGCCTTTTCATCTCCCCGACCCTCATCAACAATTCCCTAGCTCCTCAACCCACCTCTTGATCAGCTACGCTACTCCGAGTTCTAGGGTAGATAATGATGAAGAGCCGGAAGAAGAGCTTGGTGCCATGAAAGAGATGATGTATAAGATCGCCGCGATGCAACCGGTGGATATCGATCCTTCGACTATTCGAAAGCCTAAGCGTCGAAATGTACGGATTAGCGATGACCCGCAAAGCATTGCAGCTCGTCTTCGACGAGAGAGGATCAGTGAGAAGATCAGAATTCTTCAAAGGCTTGTGCCTGGTGGGACGAAGATGGACACAGCTTCAATGCTGGATGAAGCAATTCGCTATGTCAAATTCTTAAAGAGGCAAATCCGGTTGCTGCAGTCAAGTGATCAGCCGCAACAGCCAAGCACTGACGGCGGAGCCGCCGCTGGAGGGTGGCCTCTTACATTCCATAAGGCTGATGGCTCAGCCTCCTCGTCCACGTCCATGGAGACTACGCCTGCCATTATTACACCATCAGGATGGTGA

Protein sequence

MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVHDPDPDPDPDSIWSSLLPFHLPDPHQQFPSSSTHLLISYATPSSRVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSDQPQQPSTDGGAAAGGWPLTFHKADGSASSSTSMETTPAIITPSGW

Homology

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BLAST of Carg10541 vs. NCBI nr
Match: KAG6604279.1 (Transcription factor IND, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034439.1 Transcription factor IND, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 448.7 bits (1153), Expect = 2.9e-122
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVHDPDPDPDPDSIWSSLLPFHLPDPHQQF 60
           MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVHDPDPDPDPDSIWSSLLPFHLPDPHQQF
Sbjct: 1   MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVHDPDPDPDPDSIWSSLLPFHLPDPHQQF 60

Query: 61  PSSSTHLLISYATPSSRVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVR 120
           PSSSTHLLISYATPSSRVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVR
Sbjct: 61  PSSSTHLLISYATPSSRVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVR 120

Query: 121 ISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSS 180
           ISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSS
Sbjct: 121 ISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSS 180

Query: 181 DQPQQPSTDGGAAAGGWPLTFHKADGSASSSTSMETTPAIITPSGW 227
           DQPQQPSTDGGAAAGGWPLTFHKADGSASSSTSMETTPAIITPSGW
Sbjct: 181 DQPQQPSTDGGAAAGGWPLTFHKADGSASSSTSMETTPAIITPSGW 226

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BLAST of Carg10541 vs. NCBI nr
Match: XP_022950638.1 (transcription factor IND-like [Cucurbita moschata])

HSP 1 Score: 443.0 bits (1138), Expect = 1.6e-120
Identity = 226/230 (98.26%), Postives = 226/230 (98.26%), Query Frame = 0


Query: 1   MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVH----DPDPDPDPDSIWSSLLPFHLPDP 60
           MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVH    DPDPDPDPDSIWSSLLPFHLPDP
Sbjct: 1   MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVHDPDPDPDPDPDPDSIWSSLLPFHLPDP 60

Query: 61  HQQFPSSSTHLLISYATPSSRVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKR 120
           HQQFPSSSTHLLISYATPSSRVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKR
Sbjct: 61  HQQFPSSSTHLLISYATPSSRVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKR 120

Query: 121 RNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRL 180
           RNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRL
Sbjct: 121 RNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRL 180

Query: 181 LQSSDQPQQPSTDGGAAAGGWPLTFHKADGSASSSTSMETTPAIITPSGW 227
           LQSSDQPQQPSTDGGAAAGGWPLTFHKADGSASSSTSMETTPAIITPSGW
Sbjct: 181 LQSSDQPQQPSTDGGAAAGGWPLTFHKADGSASSSTSMETTPAIITPSGW 230

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BLAST of Carg10541 vs. NCBI nr
Match: XP_022978004.1 (transcription factor IND-like [Cucurbita maxima])

HSP 1 Score: 438.0 bits (1125), Expect = 5.1e-119
Identity = 220/226 (97.35%), Postives = 222/226 (98.23%), Query Frame = 0


Query: 1   MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVHDPDPDPDPDSIWSSLLPFHLPDPHQQF 60
           MEPHHLS PSPHLHHSAMEDHHILHRHHH HVHDPDPDPDPDSIWSSLLPFHL DPHQQF
Sbjct: 1   MEPHHLSKPSPHLHHSAMEDHHILHRHHHAHVHDPDPDPDPDSIWSSLLPFHLSDPHQQF 60

Query: 61  PSSSTHLLISYATPSSRVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVR 120
           PSSSTHLLISYATPSSR+D DEEPEEELGAMKEMMYK+AAMQPVDIDPSTIRKPKRRNVR
Sbjct: 61  PSSSTHLLISYATPSSRIDTDEEPEEELGAMKEMMYKMAAMQPVDIDPSTIRKPKRRNVR 120

Query: 121 ISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSS 180
           ISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSS
Sbjct: 121 ISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSS 180

Query: 181 DQPQQPSTDGGAAAGGWPLTFHKADGSASSSTSMETTPAIITPSGW 227
           DQPQQPSTDGGAAAGGWPLTFHKADGSASSSTSMETTPAIITPSGW
Sbjct: 181 DQPQQPSTDGGAAAGGWPLTFHKADGSASSSTSMETTPAIITPSGW 226

[Close]

BLAST of Carg10541 vs. NCBI nr
Match: XP_023545006.1 (transcription factor IND-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 433.0 bits (1112), Expect = 1.6e-117
Identity = 221/230 (96.09%), Postives = 223/230 (96.96%), Query Frame = 0


Query: 1   MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVH----DPDPDPDPDSIWSSLLPFHLPDP 60
           MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVH    DPDPDPDPDSIWSSLLPFHLPDP
Sbjct: 1   MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVHDLDPDPDPDPDPDSIWSSLLPFHLPDP 60

Query: 61  HQQFPSSSTHLLISYATPSSRVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKR 120
           H QFPSSSTHLLISYATPSSRVD++EEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKR
Sbjct: 61  HHQFPSSSTHLLISYATPSSRVDDNEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKR 120

Query: 121 RNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRL 180
           RNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRL
Sbjct: 121 RNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRL 180

Query: 181 LQSSDQPQQPSTDGGAAAGGWPLTFHKADGSASSSTSMETTPAIITPSGW 227
           LQSSDQPQQP TDGGAAAGGWPLTFH ADGSASSSTSMETTPAIITPSGW
Sbjct: 181 LQSSDQPQQPRTDGGAAAGGWPLTFHMADGSASSSTSMETTPAIITPSGW 230

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BLAST of Carg10541 vs. NCBI nr
Match: XP_004148648.2 (transcription factor HEC3 [Cucumis sativus] >KGN48364.1 hypothetical protein Csa_003305 [Cucumis sativus])

HSP 1 Score: 329.7 bits (844), Expect = 2.0e-86
Identity = 182/232 (78.45%), Postives = 192/232 (82.76%), Query Frame = 0


Query: 1   MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVHDPDPDPDPDSIWSSLLPFHLPDPH-QQ 60
           M+PHHLSNP PHL  SAM+DHHILH HHHVH        D DSIW S LPF L D H QQ
Sbjct: 1   MDPHHLSNPPPHLDRSAMDDHHILHHHHHVH--------DLDSIWPSFLPFQLSDHHDQQ 60

Query: 61  FPSSSTHLLISYATPSSRV-DNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRN 120
            P+SSTH +I Y+TPSS   D++EEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRN
Sbjct: 61  LPTSSTHFVIGYSTPSSGTGDDEEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRN 120

Query: 121 VRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQ 180
           VRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQ
Sbjct: 121 VRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQ 180

Query: 181 SSDQPQQPSTDGGA----AAGGWPLTFHKADGSASSSTSMETTPAIITPSGW 227
           SS  PQQPST GGA      GGW   F+KA+GS SSSTSME TPA ITP+GW
Sbjct: 181 SSQPPQQPSTSGGATTAGGGGGWHFPFNKANGSTSSSTSMENTPA-ITPTGW 223

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BLAST of Carg10541 vs. ExPASy Swiss-Prot
Match: Q9LXD8 (Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.1e-42
Identity = 101/158 (63.92%), Postives = 116/158 (73.42%), Query Frame = 0


Query: 27  HHHVHVHDPDPDPDPDSIWSSLLPFHLPDP--HQQFPSSSTHLLISYATPSSRVD--NDE 86
           HHH H +DP                H+ +P     FP  S+ L  +      + D  ++E
Sbjct: 32  HHHQHNNDP-----IGMAMDQYTQLHIFNPFSSSHFPPLSSSLTTTTLLSGDQEDDEDEE 91

Query: 87  EPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIR 146
           EP EELGAMKEMMYKIAAMQ VDIDP+T++KPKRRNVRISDDPQS+AAR RRERISE+IR
Sbjct: 92  EPLEELGAMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIR 151

Query: 147 ILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSS 181
           ILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLL ++
Sbjct: 152 ILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLNNN 184

[Close]

BLAST of Carg10541 vs. ExPASy Swiss-Prot
Match: O81313 (Transcription factor IND OS=Arabidopsis thaliana OX=3702 GN=IND PE=1 SV=3)

HSP 1 Score: 159.1 bits (401), Expect = 6.0e-38
Identity = 84/135 (62.22%), Postives = 100/135 (74.07%), Query Frame = 0


Query: 53  LPDPHQQFPSSSTHLLISYATPS-SRVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTI 112
           L   H  F +   HL++     +   +D DEE +E++ AMKEM Y IA MQPVDIDP+T+
Sbjct: 49  LTQEHAAFLNDPHHLMLDPPPETLIHLDEDEEYDEDMDAMKEMQYMIAVMQPVDIDPATV 108

Query: 113 RKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLK 172
            KP RRNVRISDDPQ++ AR RRERISEKIRIL+R+VPGG KMDTASMLDEAIRY KFLK
Sbjct: 109 PKPNRRNVRISDDPQTVVARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLK 168

Query: 173 RQIRLLQSSDQPQQP 187
           RQ+R+LQ   Q   P
Sbjct: 169 RQVRILQPHSQIGAP 183

[Close]

BLAST of Carg10541 vs. ExPASy Swiss-Prot
Match: Q9FHA7 (Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.3e-32
Identity = 74/117 (63.25%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 80  NDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISE 139
           N+      + AM+EM+++IA MQP+ IDP  ++ PKRRNVRIS DPQS+AAR RRERISE
Sbjct: 87  NNNNNGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERISE 146

Query: 140 KIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSDQPQQPSTDGGAAAGG 197
           +IRILQRLVPGGTKMDTASMLDEAI YVKFLK+Q++ L+     Q   T GG   GG
Sbjct: 147 RIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEE----QAVVTGGGGGGGG 199

[Close]

BLAST of Carg10541 vs. ExPASy Swiss-Prot
Match: Q9SND4 (Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.7e-32
Identity = 88/182 (48.35%), Postives = 114/182 (62.64%), Query Frame = 0


Query: 31  HVHDPDPDPDPDSIW----SSLLPFHLPDPHQQFPSSST------HLLISYA-TPSSRVD 90
           H  + +P+P+P +I     S+  PF     H   P   T       L   YA +PSS + 
Sbjct: 21  HFSNSNPNPNPHNIMMLSESNTHPFFFNPTHSHLPFDQTMPHHQPGLNFRYAPSPSSSLP 80

Query: 91  NDE---EPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRER 150
                      + AM+EM+++IA MQP+ IDP +++ PKR+NVRIS DPQS+AAR RRER
Sbjct: 81  EKRGGCSDNANMAAMREMIFRIAVMQPIHIDPESVKPPKRKNVRISKDPQSVAARHRRER 140

Query: 151 ISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSS---DQPQQPSTDGGAA 196
           ISE+IRILQRLVPGGTKMDTASMLDEAI YVKFLK+Q++ L+     +     +  GGA 
Sbjct: 141 ISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEEHAVVNGGGMTAVAGGAL 200

[Close]

BLAST of Carg10541 vs. ExPASy Swiss-Prot
Match: Q8S3D2 (Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.6e-28
Identity = 70/135 (51.85%), Postives = 93/135 (68.89%), Query Frame = 0


Query: 69  ISYATPSSRVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSI 128
           IS+   +   DN E   E +  MKEM+Y+ AA +PV+     + KPKR+NV+IS DPQ++
Sbjct: 223 ISFQHSTCLSDNVEPDAEAIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTV 282

Query: 129 AARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQS-SDQPQQPS 188
           AAR RRERISEKIR+LQ LVPGGTKMDTASMLDEA  Y+KFL+ Q++ L++   +  Q +
Sbjct: 283 AARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALENLRPKLDQTN 342

Query: 189 TDGGAAAGGWPLTFH 203
               +A   +PL FH
Sbjct: 343 LSFSSAPTSFPL-FH 356

[Close]

BLAST of Carg10541 vs. ExPASy TrEMBL
Match: A0A6J1GFF7 (transcription factor IND-like OS=Cucurbita moschata OX=3662 GN=LOC111453678 PE=4 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 7.7e-121
Identity = 226/230 (98.26%), Postives = 226/230 (98.26%), Query Frame = 0


Query: 1   MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVH----DPDPDPDPDSIWSSLLPFHLPDP 60
           MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVH    DPDPDPDPDSIWSSLLPFHLPDP
Sbjct: 1   MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVHDPDPDPDPDPDPDSIWSSLLPFHLPDP 60

Query: 61  HQQFPSSSTHLLISYATPSSRVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKR 120
           HQQFPSSSTHLLISYATPSSRVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKR
Sbjct: 61  HQQFPSSSTHLLISYATPSSRVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKR 120

Query: 121 RNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRL 180
           RNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRL
Sbjct: 121 RNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRL 180

Query: 181 LQSSDQPQQPSTDGGAAAGGWPLTFHKADGSASSSTSMETTPAIITPSGW 227
           LQSSDQPQQPSTDGGAAAGGWPLTFHKADGSASSSTSMETTPAIITPSGW
Sbjct: 181 LQSSDQPQQPSTDGGAAAGGWPLTFHKADGSASSSTSMETTPAIITPSGW 230

[Close]

BLAST of Carg10541 vs. ExPASy TrEMBL
Match: A0A6J1ISW8 (transcription factor IND-like OS=Cucurbita maxima OX=3661 GN=LOC111478125 PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 2.5e-119
Identity = 220/226 (97.35%), Postives = 222/226 (98.23%), Query Frame = 0


Query: 1   MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVHDPDPDPDPDSIWSSLLPFHLPDPHQQF 60
           MEPHHLS PSPHLHHSAMEDHHILHRHHH HVHDPDPDPDPDSIWSSLLPFHL DPHQQF
Sbjct: 1   MEPHHLSKPSPHLHHSAMEDHHILHRHHHAHVHDPDPDPDPDSIWSSLLPFHLSDPHQQF 60

Query: 61  PSSSTHLLISYATPSSRVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVR 120
           PSSSTHLLISYATPSSR+D DEEPEEELGAMKEMMYK+AAMQPVDIDPSTIRKPKRRNVR
Sbjct: 61  PSSSTHLLISYATPSSRIDTDEEPEEELGAMKEMMYKMAAMQPVDIDPSTIRKPKRRNVR 120

Query: 121 ISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSS 180
           ISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSS
Sbjct: 121 ISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSS 180

Query: 181 DQPQQPSTDGGAAAGGWPLTFHKADGSASSSTSMETTPAIITPSGW 227
           DQPQQPSTDGGAAAGGWPLTFHKADGSASSSTSMETTPAIITPSGW
Sbjct: 181 DQPQQPSTDGGAAAGGWPLTFHKADGSASSSTSMETTPAIITPSGW 226

[Close]

BLAST of Carg10541 vs. ExPASy TrEMBL
Match: A0A0A0KHS6 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G483450 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 9.5e-87
Identity = 182/232 (78.45%), Postives = 192/232 (82.76%), Query Frame = 0


Query: 1   MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVHDPDPDPDPDSIWSSLLPFHLPDPH-QQ 60
           M+PHHLSNP PHL  SAM+DHHILH HHHVH        D DSIW S LPF L D H QQ
Sbjct: 1   MDPHHLSNPPPHLDRSAMDDHHILHHHHHVH--------DLDSIWPSFLPFQLSDHHDQQ 60

Query: 61  FPSSSTHLLISYATPSSRV-DNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRN 120
            P+SSTH +I Y+TPSS   D++EEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRN
Sbjct: 61  LPTSSTHFVIGYSTPSSGTGDDEEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRN 120

Query: 121 VRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQ 180
           VRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQ
Sbjct: 121 VRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQ 180

Query: 181 SSDQPQQPSTDGGA----AAGGWPLTFHKADGSASSSTSMETTPAIITPSGW 227
           SS  PQQPST GGA      GGW   F+KA+GS SSSTSME TPA ITP+GW
Sbjct: 181 SSQPPQQPSTSGGATTAGGGGGWHFPFNKANGSTSSSTSMENTPA-ITPTGW 223

[Close]

BLAST of Carg10541 vs. ExPASy TrEMBL
Match: A0A5A7SM52 (Transcription factor HEC3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1230G00250 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.8e-83
Identity = 180/232 (77.59%), Postives = 189/232 (81.47%), Query Frame = 0


Query: 1   MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVHDPDPDPDPDSIWSSLLPFHLPDPH-QQ 60
           M+PHHLSNP PHL  SAM+DHHILH     HVH      D DSIW S LPF L D H QQ
Sbjct: 1   MDPHHLSNPPPHLDRSAMDDHHILH-----HVH------DLDSIWPSFLPFQLSDHHDQQ 60

Query: 61  FPSSSTHLLISYATPSSRV-DNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRN 120
            P+SSTH LI Y+TPSS   D++EEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRN
Sbjct: 61  LPTSSTHFLIGYSTPSSGTGDDEEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRN 120

Query: 121 VRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQ 180
           VRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQ
Sbjct: 121 VRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQ 180

Query: 181 SSDQPQQPSTDGGAA----AGGWPLTFHKADGSASSSTSMETTPAIITPSGW 227
           SS  PQQPST GGAA     GGW    +KA+GS SSSTSME TP  ITP+GW
Sbjct: 181 SSQPPQQPSTSGGAATAAGGGGWHFPLNKANGSTSSSTSMENTPT-ITPTGW 220

[Close]

BLAST of Carg10541 vs. ExPASy TrEMBL
Match: A0A1S4DTA8 (transcription factor HEC3-like OS=Cucumis melo OX=3656 GN=LOC103485271 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.8e-83
Identity = 180/232 (77.59%), Postives = 189/232 (81.47%), Query Frame = 0


Query: 1   MEPHHLSNPSPHLHHSAMEDHHILHRHHHVHVHDPDPDPDPDSIWSSLLPFHLPDPH-QQ 60
           M+PHHLSNP PHL  SAM+DHHILH     HVH      D DSIW S LPF L D H QQ
Sbjct: 1   MDPHHLSNPPPHLDRSAMDDHHILH-----HVH------DLDSIWPSFLPFQLSDHHDQQ 60

Query: 61  FPSSSTHLLISYATPSSRV-DNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRN 120
            P+SSTH LI Y+TPSS   D++EEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRN
Sbjct: 61  LPTSSTHFLIGYSTPSSGTGDDEEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRN 120

Query: 121 VRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQ 180
           VRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQ
Sbjct: 121 VRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQ 180

Query: 181 SSDQPQQPSTDGGAA----AGGWPLTFHKADGSASSSTSMETTPAIITPSGW 227
           SS  PQQPST GGAA     GGW    +KA+GS SSSTSME TP  ITP+GW
Sbjct: 181 SSQPPQQPSTSGGAATAAGGGGWHFPLNKANGSTSSSTSMENTPT-ITPTGW 220

[Close]

BLAST of Carg10541 vs. TAIR 10
Match: AT5G09750.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 174.9 bits (442), Expect = 7.5e-44
Identity = 101/158 (63.92%), Postives = 116/158 (73.42%), Query Frame = 0


Query: 27  HHHVHVHDPDPDPDPDSIWSSLLPFHLPDP--HQQFPSSSTHLLISYATPSSRVD--NDE 86
           HHH H +DP                H+ +P     FP  S+ L  +      + D  ++E
Sbjct: 32  HHHQHNNDP-----IGMAMDQYTQLHIFNPFSSSHFPPLSSSLTTTTLLSGDQEDDEDEE 91

Query: 87  EPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIR 146
           EP EELGAMKEMMYKIAAMQ VDIDP+T++KPKRRNVRISDDPQS+AAR RRERISE+IR
Sbjct: 92  EPLEELGAMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISERIR 151

Query: 147 ILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSS 181
           ILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLL ++
Sbjct: 152 ILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLNNN 184

[Close]

BLAST of Carg10541 vs. TAIR 10
Match: AT4G00120.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 159.1 bits (401), Expect = 4.3e-39
Identity = 84/135 (62.22%), Postives = 100/135 (74.07%), Query Frame = 0


Query: 53  LPDPHQQFPSSSTHLLISYATPS-SRVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTI 112
           L   H  F +   HL++     +   +D DEE +E++ AMKEM Y IA MQPVDIDP+T+
Sbjct: 49  LTQEHAAFLNDPHHLMLDPPPETLIHLDEDEEYDEDMDAMKEMQYMIAVMQPVDIDPATV 108

Query: 113 RKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLK 172
            KP RRNVRISDDPQ++ AR RRERISEKIRIL+R+VPGG KMDTASMLDEAIRY KFLK
Sbjct: 109 PKPNRRNVRISDDPQTVVARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLK 168

Query: 173 RQIRLLQSSDQPQQP 187
           RQ+R+LQ   Q   P
Sbjct: 169 RQVRILQPHSQIGAP 183

[Close]

BLAST of Carg10541 vs. TAIR 10
Match: AT5G67060.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 141.4 bits (355), Expect = 9.2e-34
Identity = 74/117 (63.25%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 80  NDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISE 139
           N+      + AM+EM+++IA MQP+ IDP  ++ PKRRNVRIS DPQS+AAR RRERISE
Sbjct: 87  NNNNNGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERISE 146

Query: 140 KIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSDQPQQPSTDGGAAAGG 197
           +IRILQRLVPGGTKMDTASMLDEAI YVKFLK+Q++ L+     Q   T GG   GG
Sbjct: 147 RIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEE----QAVVTGGGGGGGG 199

[Close]

BLAST of Carg10541 vs. TAIR 10
Match: AT3G50330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-33
Identity = 88/182 (48.35%), Postives = 114/182 (62.64%), Query Frame = 0


Query: 31  HVHDPDPDPDPDSIW----SSLLPFHLPDPHQQFPSSST------HLLISYA-TPSSRVD 90
           H  + +P+P+P +I     S+  PF     H   P   T       L   YA +PSS + 
Sbjct: 21  HFSNSNPNPNPHNIMMLSESNTHPFFFNPTHSHLPFDQTMPHHQPGLNFRYAPSPSSSLP 80

Query: 91  NDE---EPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRER 150
                      + AM+EM+++IA MQP+ IDP +++ PKR+NVRIS DPQS+AAR RRER
Sbjct: 81  EKRGGCSDNANMAAMREMIFRIAVMQPIHIDPESVKPPKRKNVRISKDPQSVAARHRRER 140

Query: 151 ISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSS---DQPQQPSTDGGAA 196
           ISE+IRILQRLVPGGTKMDTASMLDEAI YVKFLK+Q++ L+     +     +  GGA 
Sbjct: 141 ISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLEEHAVVNGGGMTAVAGGAL 200

[Close]

BLAST of Carg10541 vs. TAIR 10
Match: AT3G21330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 125.9 bits (315), Expect = 4.0e-29
Identity = 70/135 (51.85%), Postives = 93/135 (68.89%), Query Frame = 0


Query: 69  ISYATPSSRVDNDEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSI 128
           IS+   +   DN E   E +  MKEM+Y+ AA +PV+     + KPKR+NV+IS DPQ++
Sbjct: 223 ISFQHSTCLSDNVEPDAEAIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTV 282

Query: 129 AARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQS-SDQPQQPS 188
           AAR RRERISEKIR+LQ LVPGGTKMDTASMLDEA  Y+KFL+ Q++ L++   +  Q +
Sbjct: 283 AARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALENLRPKLDQTN 342

Query: 189 TDGGAAAGGWPLTFH 203
               +A   +PL FH
Sbjct: 343 LSFSSAPTSFPL-FH 356

The following BLAST results are available for this feature:

BLAST of Carg10541 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604279.1	2.9e-122	100.00	Transcription factor IND, partial [Cucurbita argyrosperma subsp. sororia] >KAG70...	[more]
XP_022950638.1	1.6e-120	98.26	transcription factor IND-like [Cucurbita moschata]	[more]
XP_022978004.1	5.1e-119	97.35	transcription factor IND-like [Cucurbita maxima]	[more]
XP_023545006.1	1.6e-117	96.09	transcription factor IND-like [Cucurbita pepo subsp. pepo]	[more]
XP_004148648.2	2.0e-86	78.45	transcription factor HEC3 [Cucumis sativus] >KGN48364.1 hypothetical protein Csa...	[more]

BLAST of Carg10541 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXD8	1.1e-42	63.92	Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1	[more]
O81313	6.0e-38	62.22	Transcription factor IND OS=Arabidopsis thaliana OX=3702 GN=IND PE=1 SV=3	[more]
Q9FHA7	1.3e-32	63.25	Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1	[more]
Q9SND4	1.7e-32	48.35	Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1	[more]
Q8S3D2	5.6e-28	51.85	Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1	[more]

BLAST of Carg10541 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GFF7	7.7e-121	98.26	transcription factor IND-like OS=Cucurbita moschata OX=3662 GN=LOC111453678 PE=4...	[more]
A0A6J1ISW8	2.5e-119	97.35	transcription factor IND-like OS=Cucurbita maxima OX=3661 GN=LOC111478125 PE=4 S...	[more]
A0A0A0KHS6	9.5e-87	78.45	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G483450 PE=4 S...	[more]
A0A5A7SM52	2.8e-83	77.59	Transcription factor HEC3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S4DTA8	2.8e-83	77.59	transcription factor HEC3-like OS=Cucumis melo OX=3656 GN=LOC103485271 PE=4 SV=1	[more]

BLAST of Carg10541 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09750.1	7.5e-44	63.92	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G00120.1	4.3e-39	62.22	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G67060.1	9.2e-34	63.25	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G50330.1	1.2e-33	48.35	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G21330.1	4.0e-29	51.85	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 127..176 e-value: 6.1E-12 score: 55.7
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 130..170 e-value: 1.3E-6 score: 28.3
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 121..170 score: 14.982968
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 124..188 e-value: 2.7E-11 score: 45.4
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 126..182
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 204..226
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..226
None	No IPR available	PANTHER	PTHR45914:SF7	TRANSCRIPTION FACTOR HEC3-RELATED	coord: 14..219
None	No IPR available	PANTHER	PTHR45914	TRANSCRIPTION FACTOR HEC3-RELATED	coord: 14..219
None	No IPR available	CDD	cd11454	bHLH_AtIND_like	coord: 122..182 e-value: 2.33367E-37 score: 123.271

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10541-RA	Carg10541-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity