Carg10502 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10502
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionProtein GL2-INTERACTING REPRESSOR 1
LocationCarg_Chr03: 8459305 .. 8459661 (-)
RNA-Seq ExpressionCarg10502
SyntenyCarg10502
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCGGAGAAACAGTGGCGGCGGAGGAGGAGCAGCAGCAGCGCCGAAGCTGGAGCTGAAGTTGAACCTGTCTCCGCCGAGGGCGAATAGAGGAGTGGAGTCACCGAGCCGGTCGGCTACGGTGTCGCCGACGTCGCCGCCGAGCTCGTGTGTGTCGTCGGAGGAGGAGATGACGGTGGGGAGAGTGAGATACTCGAGCAGCCCTGAAGCGACATCGATGATGCTGGTCGGATGCCCACGGTGTCTGATGTATGTTATGCTGTCGGAAGAAGACCCAAAATGTCCGAAATGCAAAAGCACTGTTCTTCTCGACGTTCTCCATGATAACTCCGCCGTCAAAACCAGAAGAAACTAG

mRNA sequence

ATGAACCGGAGAAACAGTGGCGGCGGAGGAGGAGCAGCAGCAGCGCCGAAGCTGGAGCTGAAGTTGAACCTGTCTCCGCCGAGGGCGAATAGAGGAGTGGAGTCACCGAGCCGGTCGGCTACGGTGTCGCCGACGTCGCCGCCGAGCTCGTGTGTGTCGTCGGAGGAGGAGATGACGGTGGGGAGAGTGAGATACTCGAGCAGCCCTGAAGCGACATCGATGATGCTGGTCGGATGCCCACGGTGTCTGATGTATGTTATGCTGTCGGAAGAAGACCCAAAATGTCCGAAATGCAAAAGCACTGTTCTTCTCGACGTTCTCCATGATAACTCCGCCGTCAAAACCAGAAGAAACTAG

Coding sequence (CDS)

ATGAACCGGAGAAACAGTGGCGGCGGAGGAGGAGCAGCAGCAGCGCCGAAGCTGGAGCTGAAGTTGAACCTGTCTCCGCCGAGGGCGAATAGAGGAGTGGAGTCACCGAGCCGGTCGGCTACGGTGTCGCCGACGTCGCCGCCGAGCTCGTGTGTGTCGTCGGAGGAGGAGATGACGGTGGGGAGAGTGAGATACTCGAGCAGCCCTGAAGCGACATCGATGATGCTGGTCGGATGCCCACGGTGTCTGATGTATGTTATGCTGTCGGAAGAAGACCCAAAATGTCCGAAATGCAAAAGCACTGTTCTTCTCGACGTTCTCCATGATAACTCCGCCGTCAAAACCAGAAGAAACTAG

Protein sequence

MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTVGRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKTRRN
Homology
BLAST of Carg10502 vs. NCBI nr
Match: XP_022925998.1 (uncharacterized protein LOC111433248 [Cucurbita moschata] >KAG6604328.1 Protein salt-induced and EIN3/EIL1-dependent 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034480.1 hypothetical protein SDJN02_04209, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 231.1 bits (588), Expect = 4.9e-57
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0

Query: 1   MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTV 60
           MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTV
Sbjct: 1   MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTV 60

Query: 61  GRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKTRRN 119
           GRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKTRRN
Sbjct: 61  GRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKTRRN 118

BLAST of Carg10502 vs. NCBI nr
Match: XP_022979077.1 (uncharacterized protein LOC111478822 [Cucurbita maxima])

HSP 1 Score: 229.2 bits (583), Expect = 1.9e-56
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0

Query: 1   MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTV 60
           MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTV
Sbjct: 1   MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTV 60

Query: 61  GRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKTRRN 119
           GRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVK RRN
Sbjct: 61  GRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKNRRN 118

BLAST of Carg10502 vs. NCBI nr
Match: XP_023543892.1 (uncharacterized protein LOC111803624 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.5 bits (576), Expect = 1.2e-55
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0

Query: 1   MNRRNSGG-GGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMT 60
           MNRRNSGG GGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMT
Sbjct: 1   MNRRNSGGRGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMT 60

Query: 61  VGRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKTRRN 119
           VGRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKTRRN
Sbjct: 61  VGRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKTRRN 119

BLAST of Carg10502 vs. NCBI nr
Match: XP_004143338.1 (uncharacterized protein LOC101217127 [Cucumis sativus] >KAA0025228.1 uncharacterized protein E6C27_scaffold541G00770 [Cucumis melo var. makuwa] >KGN48289.1 hypothetical protein Csa_003966 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 7.2e-48
Identity = 106/118 (89.83%), Postives = 109/118 (92.37%), Query Frame = 0

Query: 1   MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTV 60
           MNRRNSGGGG  AA PKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM  
Sbjct: 1   MNRRNSGGGG--AATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM-- 60

Query: 61  GRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKTRRN 119
              RYS+SPE TSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDN+AVKTR+N
Sbjct: 61  ---RYSNSPETTSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTRKN 111

BLAST of Carg10502 vs. NCBI nr
Match: XP_008462606.1 (PREDICTED: uncharacterized protein LOC103500924, partial [Cucumis melo])

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-46
Identity = 104/117 (88.89%), Postives = 107/117 (91.45%), Query Frame = 0

Query: 1   MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTV 60
           MNRRNSGGGG  AA PKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM  
Sbjct: 1   MNRRNSGGGG--AATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM-- 60

Query: 61  GRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKTRR 118
              RYS+SPE TSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDN+AVKT +
Sbjct: 61  ---RYSNSPETTSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTEK 110

BLAST of Carg10502 vs. ExPASy Swiss-Prot
Match: Q9FNI1 (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.5e-35
Identity = 82/118 (69.49%), Postives = 89/118 (75.42%), Query Frame = 0

Query: 15  APKLELKLNLSPPRAN--RGVESPSRSATVSPTSPPSSCVSSEEEMTVGRVRYSSSPEAT 74
           +PKLELKLNLSPP ++  R V SPSRSAT SPTSPPSSCVSSE       VRYS+SPE T
Sbjct: 5   SPKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDEPSVRYSTSPETT 64

Query: 75  SMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDN------------SAVKTRRN 119
           SM+LVGCPRCLMYVMLSE+DPKCPKCKSTVLLD LH+N            S  KTRRN
Sbjct: 65  SMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNANANAAAASSGRKTRRN 122

BLAST of Carg10502 vs. ExPASy Swiss-Prot
Match: Q9SRN4 (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-22
Identity = 63/115 (54.78%), Postives = 73/115 (63.48%), Query Frame = 0

Query: 1   MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTV 60
           M+RRN  G       PKLEL+LNLSPP +     S  RS   S T+ PSSCVSSE     
Sbjct: 1   MSRRNKNG-------PKLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSSCVSSE----- 60

Query: 61  GRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKT 116
                  +   TSM+LVGCPRCLMYVMLS++DPKCPKCKSTVLLD L +N+   T
Sbjct: 61  --TNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQENAFAAT 101

BLAST of Carg10502 vs. ExPASy Swiss-Prot
Match: Q9FMS4 (Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 GN=SIED1 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-08
Identity = 42/105 (40.00%), Postives = 57/105 (54.29%), Query Frame = 0

Query: 12  AAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTVGRVRYSSSPEA 71
           AA+   L+LKLN+          SPS  +++   S  SS  S E E            EA
Sbjct: 5   AASNLGLDLKLNI----------SPSLDSSLLTESSSSSLCSEEAE--------GGGGEA 64

Query: 72  TSMMLVGCPRCLMYVMLS-EEDPKCPKCKSTVLLDVLHDNSAVKT 116
            SM++VGCP C+MY++ S E DP+CP+C S VLLD L  N + K+
Sbjct: 65  KSMVVVGCPNCIMYIITSLENDPRCPRCNSHVLLDFLTGNHSKKS 91

BLAST of Carg10502 vs. ExPASy TrEMBL
Match: A0A6J1EGT8 (uncharacterized protein LOC111433248 OS=Cucurbita moschata OX=3662 GN=LOC111433248 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.4e-57
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0

Query: 1   MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTV 60
           MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTV
Sbjct: 1   MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTV 60

Query: 61  GRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKTRRN 119
           GRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKTRRN
Sbjct: 61  GRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKTRRN 118

BLAST of Carg10502 vs. ExPASy TrEMBL
Match: A0A6J1IMT5 (uncharacterized protein LOC111478822 OS=Cucurbita maxima OX=3661 GN=LOC111478822 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 9.1e-57
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0

Query: 1   MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTV 60
           MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTV
Sbjct: 1   MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTV 60

Query: 61  GRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKTRRN 119
           GRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVK RRN
Sbjct: 61  GRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKNRRN 118

BLAST of Carg10502 vs. ExPASy TrEMBL
Match: A0A5A7SGG8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G00770 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.5e-48
Identity = 106/118 (89.83%), Postives = 109/118 (92.37%), Query Frame = 0

Query: 1   MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTV 60
           MNRRNSGGGG  AA PKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM  
Sbjct: 1   MNRRNSGGGG--AATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM-- 60

Query: 61  GRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKTRRN 119
              RYS+SPE TSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDN+AVKTR+N
Sbjct: 61  ---RYSNSPETTSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTRKN 111

BLAST of Carg10502 vs. ExPASy TrEMBL
Match: A0A0A0KHJ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454370 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.5e-48
Identity = 106/118 (89.83%), Postives = 109/118 (92.37%), Query Frame = 0

Query: 1   MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTV 60
           MNRRNSGGGG  AA PKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM  
Sbjct: 1   MNRRNSGGGG--AATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM-- 60

Query: 61  GRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKTRRN 119
              RYS+SPE TSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDN+AVKTR+N
Sbjct: 61  ---RYSNSPETTSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTRKN 111

BLAST of Carg10502 vs. ExPASy TrEMBL
Match: A0A1S3CHA8 (uncharacterized protein LOC103500924 OS=Cucumis melo OX=3656 GN=LOC103500924 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 6.5e-47
Identity = 104/117 (88.89%), Postives = 107/117 (91.45%), Query Frame = 0

Query: 1   MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTV 60
           MNRRNSGGGG  AA PKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM  
Sbjct: 1   MNRRNSGGGG--AATPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEM-- 60

Query: 61  GRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKTRR 118
              RYS+SPE TSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDN+AVKT +
Sbjct: 61  ---RYSNSPETTSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNAAVKTEK 110

BLAST of Carg10502 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 148.3 bits (373), Expect = 3.9e-36
Identity = 82/118 (69.49%), Postives = 89/118 (75.42%), Query Frame = 0

Query: 15  APKLELKLNLSPPRAN--RGVESPSRSATVSPTSPPSSCVSSEEEMTVGRVRYSSSPEAT 74
           +PKLELKLNLSPP ++  R V SPSRSAT SPTSPPSSCVSSE       VRYS+SPE T
Sbjct: 5   SPKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDEPSVRYSTSPETT 64

Query: 75  SMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDN------------SAVKTRRN 119
           SM+LVGCPRCLMYVMLSE+DPKCPKCKSTVLLD LH+N            S  KTRRN
Sbjct: 65  SMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNANANAAAASSGRKTRRN 122

BLAST of Carg10502 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 107.5 bits (267), Expect = 7.7e-24
Identity = 63/115 (54.78%), Postives = 73/115 (63.48%), Query Frame = 0

Query: 1   MNRRNSGGGGGAAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTV 60
           M+RRN  G       PKLEL+LNLSPP +     S  RS   S T+ PSSCVSSE     
Sbjct: 1   MSRRNKNG-------PKLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSSCVSSE----- 60

Query: 61  GRVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVLHDNSAVKT 116
                  +   TSM+LVGCPRCLMYVMLS++DPKCPKCKSTVLLD L +N+   T
Sbjct: 61  --TNQEENETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQENAFAAT 101

BLAST of Carg10502 vs. TAIR 10
Match: AT5G22270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits to 136 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 8.2e-10
Identity = 42/105 (40.00%), Postives = 57/105 (54.29%), Query Frame = 0

Query: 12  AAAAPKLELKLNLSPPRANRGVESPSRSATVSPTSPPSSCVSSEEEMTVGRVRYSSSPEA 71
           AA+   L+LKLN+          SPS  +++   S  SS  S E E            EA
Sbjct: 5   AASNLGLDLKLNI----------SPSLDSSLLTESSSSSLCSEEAE--------GGGGEA 64

Query: 72  TSMMLVGCPRCLMYVMLS-EEDPKCPKCKSTVLLDVLHDNSAVKT 116
            SM++VGCP C+MY++ S E DP+CP+C S VLLD L  N + K+
Sbjct: 65  KSMVVVGCPNCIMYIITSLENDPRCPRCNSHVLLDFLTGNHSKKS 91

BLAST of Carg10502 vs. TAIR 10
Match: AT3G52561.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 2.7e-05
Identity = 25/68 (36.76%), Postives = 40/68 (58.82%), Query Frame = 0

Query: 38  RSATVSPTSPPSSCVSSEEEMTVG-RVRYSSSPEATSMMLVGCPRCLMYVMLSEEDPKCP 97
           RS +   +S  +SC++  EE+       +    EA  M+++GC  C+MYVM+ +E  +CP
Sbjct: 30  RSPSSDTSSSQNSCLTRTEEVKEEVASSWVDEEEAPEMVVMGCRSCMMYVMVLQERQRCP 89

Query: 98  KCKSTVLL 105
           KCK T L+
Sbjct: 90  KCKCTDLI 97

BLAST of Carg10502 vs. TAIR 10
Match: AT1G16500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79160.1); Has 136 Blast hits to 134 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 131; Viruses - 1; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.4e-04
Identity = 18/42 (42.86%), Postives = 27/42 (64.29%), Query Frame = 0

Query: 66  SSSPEATSMMLVGCPRCLMYVMLSEEDPKCPKCKSTVLLDVL 108
           +S+  A S +  GCP CL YV +++ +PKCP+C S V L  +
Sbjct: 207 ASATVAASQVAAGCPGCLSYVFVAKNNPKCPRCHSFVPLPAM 248

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022925998.14.9e-57100.00uncharacterized protein LOC111433248 [Cucurbita moschata] >KAG6604328.1 Protein ... [more]
XP_022979077.11.9e-5699.15uncharacterized protein LOC111478822 [Cucurbita maxima][more]
XP_023543892.11.2e-5599.16uncharacterized protein LOC111803624 [Cucurbita pepo subsp. pepo][more]
XP_004143338.17.2e-4889.83uncharacterized protein LOC101217127 [Cucumis sativus] >KAA0025228.1 uncharacter... [more]
XP_008462606.11.3e-4688.89PREDICTED: uncharacterized protein LOC103500924, partial [Cucumis melo][more]
Match NameE-valueIdentityDescription
Q9FNI15.5e-3569.49Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1... [more]
Q9SRN41.1e-2254.78Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1... [more]
Q9FMS41.2e-0840.00Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 G... [more]
Match NameE-valueIdentityDescription
A0A6J1EGT82.4e-57100.00uncharacterized protein LOC111433248 OS=Cucurbita moschata OX=3662 GN=LOC1114332... [more]
A0A6J1IMT59.1e-5799.15uncharacterized protein LOC111478822 OS=Cucurbita maxima OX=3661 GN=LOC111478822... [more]
A0A5A7SGG83.5e-4889.83Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0KHJ43.5e-4889.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G454370 PE=4 SV=1[more]
A0A1S3CHA86.5e-4788.89uncharacterized protein LOC103500924 OS=Cucumis melo OX=3656 GN=LOC103500924 PE=... [more]
Match NameE-valueIdentityDescription
AT5G06270.13.9e-3669.49unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G11600.17.7e-2454.78unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
AT5G22270.18.2e-1040.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G52561.12.7e-0536.76unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G16500.11.4e-0442.86unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..67
NoneNo IPR availablePANTHERPTHR33177:SF40SUBFAMILY NOT NAMEDcoord: 1..117
NoneNo IPR availablePANTHERPTHR33177PUTATIVE-RELATEDcoord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10502-RACarg10502-RAmRNA