Carg10468 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10468
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S acidic ribosomal protein P2-like
Location	Carg_Chr03: 8612299 .. 8613442 (+)
RNA-Seq Expression	Carg10468
Synteny	Carg10468

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAAATTCTTTCGTATAACTTAGCTTCTTTCTCCAATTCCACCATTCATCTTGTGCGATTGTTTTCTCCTCCGTCTCCGGTATGTTCTTCGTCTCCTTCATCCATTCTGTTCATGTTTTAGTTACATTGGGCAGAGTGTTTTAACACGGTTTGATTCGAGCTTCCTTTTCTTTTTATAGATTTTCAGAGATGAAGATAGTTGCGGCGTATTTGTTGGCTGTTTTGGGCGGAAACACTCACCCTTCGGTTGAGGATATCAACGCCATTCTCGGCTCTGGTATGATATTTAGGGTTTTGTTTTGATTCGATTCCGTACTCATTAGAGTAGATTAATTTGATTTTGCGTTTAGTCTGGTTGATTACCGTAAATGCAGTTCATAAATTGAAAATTTGAATTGTTAATCGGCGTACATTCGCAGTTGGAATAGAGGTTGAAGATGAAAGAATAGAGTTGCTTCTTTCCCAAGTTAAGGGCAAAGATTTAGCAGAGGTCATAGCCAGTGGAAGGGAGAAGATGGCATCAATCTCTTCTGTTGGTTCTGCTATTCCTGTAGCTGCCGGCGGCGGTGGCGCTGCTTCTGCTGCTGTGGCTGCCGAGCCTGTGAATGAGGACAAGAAAGAAGTTGAAGAAGAGTCAGAGGATGTAAGTATCACAAATTCATTCAGAATCCGAATTAAACTTGTTTCATTCTTCTAACCAATATCCTTATTTGTTTCTTGCTTGTATGATACAGGAGATGTGCTTCAGTCTCTTTGATTAACCAGATTTTGCAACCCTCCCTTACACAGTACTCGGATTCATTCAAATTGCTATCTAGAGACCTGGATTTTTGGTTACTTAATTATGATATAGGATGAACTATTATGACCAGTTATAGTTATAGACCCATTTAGTTTTATGTGAATTTATCAATTCCTGGCTAGTTTATGTCTCTTGTATGGCATGTTCTTCAGCATTTCTATAAAATATTTCCAAGTTTTGAAGTGTTTTGTCCGTTTTCTTTCACCCCTAGCTCAAGAACATCTCTCTGATTGGATAGCCCATAACTTGCAAGAAACTTGCTTTAATTTATCTATGCTTAAATTTATGTATGATTGGATATCCCTTAGCTCAAAAAGTTCTTGACTGATGGTTGAATCCAA

mRNA sequence

TTTAAATTCTTTCGTATAACTTAGCTTCTTTCTCCAATTCCACCATTCATCTTGTGCGATTGTTTTCTCCTCCGTCTCCGGTATGTTCTTCGTCTCCTTCATCCATTCTGTTCATGTTTTAGTTACATTGGGCAGAGTGTTTTAACACGGTTTGATTCGAGCTTCCTTTTCTTTTTATAGATTTTCAGAGATGAAGATAGTTGCGGCGTATTTGTTGGCTGTTTTGGGCGGAAACACTCACCCTTCGGTTGAGGATATCAACGCCATTCTCGGCTCTGTTGGAATAGAGGTTGAAGATGAAAGAATAGAGTTGCTTCTTTCCCAAGTTAAGGGCAAAGATTTAGCAGAGGTCATAGCCAGTGGAAGGGAGAAGATGGCATCAATCTCTTCTGTTGGTTCTGCTATTCCTGTAGCTGCCGGCGGCGGTGGCGCTGCTTCTGCTGCTGTGGCTGCCGAGCCTGTGAATGAGGACAAGAAAGAAGTTGAAGAAGAGTCAGAGGATGAGATGTGCTTCAGTCTCTTTGATTAACCAGATTTTGCAACCCTCCCTTACACAGTACTCGGATTCATTCAAATTGCTATCTAGAGACCTGGATTTTTGGTTACTTAATTATGATATAGGATGAACTATTATGACCAGTTATAGTTATAGACCCATTTAGTTTTATGTGAATTTATCAATTCCTGGCTAGTTTATGTCTCTTGTATGGCATGTTCTTCAGCATTTCTATAAAATATTTCCAAGTTTTGAAGTGTTTTGTCCGTTTTCTTTCACCCCTAGCTCAAGAACATCTCTCTGATTGGATAGCCCATAACTTGCAAGAAACTTGCTTTAATTTATCTATGCTTAAATTTATGTATGATTGGATATCCCTTAGCTCAAAAAGTTCTTGACTGATGGTTGAATCCAA

Coding sequence (CDS)

ATGAAGATAGTTGCGGCGTATTTGTTGGCTGTTTTGGGCGGAAACACTCACCCTTCGGTTGAGGATATCAACGCCATTCTCGGCTCTGTTGGAATAGAGGTTGAAGATGAAAGAATAGAGTTGCTTCTTTCCCAAGTTAAGGGCAAAGATTTAGCAGAGGTCATAGCCAGTGGAAGGGAGAAGATGGCATCAATCTCTTCTGTTGGTTCTGCTATTCCTGTAGCTGCCGGCGGCGGTGGCGCTGCTTCTGCTGCTGTGGCTGCCGAGCCTGTGAATGAGGACAAGAAAGAAGTTGAAGAAGAGTCAGAGGATGAGATGTGCTTCAGTCTCTTTGATTAA

Protein sequence

MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGREKMASISSVGSAIPVAAGGGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD

Homology

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BLAST of Carg10468 vs. NCBI nr
Match: XP_022925971.1 (60S acidic ribosomal protein P2-like [Cucurbita moschata] >XP_022925973.1 60S acidic ribosomal protein P2-like [Cucurbita moschata] >KAG7034513.1 hypothetical protein SDJN02_04243 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 201.1 bits (510), Expect = 5.2e-48
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60
           MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60

Query: 61  KMASISSVGSAIPVAAGGGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 113
           KMASISSVGSAIPVAAGGGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD
Sbjct: 61  KMASISSVGSAIPVAAGGGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 112

[Close]

BLAST of Carg10468 vs. NCBI nr
Match: KAG6604363.1 (hypothetical protein SDJN03_04972, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199.9 bits (507), Expect = 1.2e-47
Identity = 111/112 (99.11%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60
           MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEV+DERIELLLSQVKGKDLAEVIASGRE
Sbjct: 24  MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVDDERIELLLSQVKGKDLAEVIASGRE 83

Query: 61  KMASISSVGSAIPVAAGGGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 113
           KMASISSVGSAIPVAAGGGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD
Sbjct: 84  KMASISSVGSAIPVAAGGGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 135

[Close]

BLAST of Carg10468 vs. NCBI nr
Match: XP_022977389.1 (60S acidic ribosomal protein P2-like [Cucurbita maxima] >XP_022977390.1 60S acidic ribosomal protein P2-like [Cucurbita maxima])

HSP 1 Score: 196.1 bits (497), Expect = 1.7e-46
Identity = 110/112 (98.21%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60
           MKIVAAYLLA LGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE
Sbjct: 1   MKIVAAYLLADLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60

Query: 61  KMASISSVGSAIPVAAGGGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 113
           KMASISSVGSAIPVAAGGGGAASAAVAAEPV EDKKEVEEESEDEMCFSLFD
Sbjct: 61  KMASISSVGSAIPVAAGGGGAASAAVAAEPVKEDKKEVEEESEDEMCFSLFD 112

[Close]

BLAST of Carg10468 vs. NCBI nr
Match: XP_023543240.1 (60S acidic ribosomal protein P2-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.9 bits (494), Expect = 3.7e-46
Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60
           MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKG+DLAEVIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGRDLAEVIASGRE 60

Query: 61  KMASISSVGSAIPVAAGGGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 113
           KMASISSVGSAIPVAAGGGGAASAAVAAEPV EDKKE EEESEDEMCFSLFD
Sbjct: 61  KMASISSVGSAIPVAAGGGGAASAAVAAEPVKEDKKEDEEESEDEMCFSLFD 112

[Close]

BLAST of Carg10468 vs. NCBI nr
Match: XP_004143310.2 (60S acidic ribosomal protein P2 [Cucumis sativus] >KGN48246.1 hypothetical protein Csa_003607 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 4.6e-36
Identity = 89/115 (77.39%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60
           MKIVAAYLLA+LGGNTHPS+ DI AIL SVG+E EDERIELLLSQVKGKD+AE++A GRE
Sbjct: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60

Query: 61  KMASISSVGSAIPVAAG---GGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 113
           KMA +   GSAIPVAAG   GGGAA+A VAAEPV EDKKEV EES+++MCFSLFD
Sbjct: 61  KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD 115

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BLAST of Carg10468 vs. ExPASy Swiss-Prot
Match: P41099 (60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-25
Identity = 68/114 (59.65%), Postives = 88/114 (77.19%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60
           MK++AA+LLA+LGGNT P+ ED+ +IL SVG + +D++IELLLSQVKGKD+ E+IASGRE
Sbjct: 1   MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRE 60

Query: 61  KMASISSVGSAIPVAA--GGGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 113
           ++AS+ S G     AA  GGGG A AA A EP  E+K   EEES++E+ FSLFD
Sbjct: 61  RLASVPSGGGVAVAAAAGGGGGDAPAAAAEEPKKEEKS--EEESDEELGFSLFD 112

[Close]

BLAST of Carg10468 vs. ExPASy Swiss-Prot
Match: Q9SLF7 (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.2e-25
Identity = 69/115 (60.00%), Postives = 83/115 (72.17%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60
           MK+VAAYLLAVL G   P+  DI  ILGSVG E ED +IELLL +VKGKDLAE+IA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KMASISSVGS---AIPVAAGGGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 113
           K+AS+ S G    A+  A  GGG    A AAE   E+KKE +EES+D+M FSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Carg10468 vs. ExPASy Swiss-Prot
Match: P51407 (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 8.4e-25
Identity = 68/115 (59.13%), Postives = 83/115 (72.17%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60
           MK+VAA+LLAVL G   P+  DI  ILGSVG E ED +IELLL +VKGKDLAE+IA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KMASISSVGS---AIPVAAGGGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 113
           K+AS+ S G    A+  A  GGG    A AAE   E+KKE +EES+D+M FSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Carg10468 vs. ExPASy Swiss-Prot
Match: P46252 (60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3)

HSP 1 Score: 114.4 bits (285), Expect = 8.4e-25
Identity = 66/112 (58.93%), Postives = 82/112 (73.21%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60
           MK VAAYLLAVL GN  PS +D+ AIL SVG EV++E++ELLLSQ+ GKD+ E+IA+GRE
Sbjct: 1   MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGRE 60

Query: 61  KMASISSVGSAIPVAAGGGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 113
           K AS+   G  + VAA    A  AA AAE   E+K E +EES+D+M FSLFD
Sbjct: 61  KFASVPCGGGGVAVAAAAPAAGGAAPAAEAKKEEKVEEKEESDDDMGFSLFD 112

[Close]

BLAST of Carg10468 vs. ExPASy Swiss-Prot
Match: O01725 (60S acidic ribosomal protein P2 OS=Branchiostoma floridae OX=7739 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-23
Identity = 68/117 (58.12%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60
           M+ VAAYLLAVLGGN +PS  DI  ILGSVGI+ EDER+  ++ ++KGKD+ EV+A+GR 
Sbjct: 1   MRYVAAYLLAVLGGNANPSAGDIKKILGSVGIDAEDERLNKVIGELKGKDIEEVMAAGRG 60

Query: 61  KMASISSVGSAIPVAAGGGGAAS----AAVAAEPVNEDKK-EVEEESEDEMCFSLFD 113
           K++S+ S G  +  AAGGGGAA+    AA AAE   E+KK E EEES+D+M F LFD
Sbjct: 61  KLSSMPS-GGGVAAAAGGGGAAAGGGGAAPAAEEKKEEKKEESEEESDDDMGFGLFD 116

[Close]

BLAST of Carg10468 vs. ExPASy TrEMBL
Match: A0A6J1EDL3 (60S acidic ribosomal protein P2-like OS=Cucurbita moschata OX=3662 GN=LOC111433228 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.5e-48
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60
           MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60

Query: 61  KMASISSVGSAIPVAAGGGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 113
           KMASISSVGSAIPVAAGGGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD
Sbjct: 61  KMASISSVGSAIPVAAGGGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 112

[Close]

BLAST of Carg10468 vs. ExPASy TrEMBL
Match: A0A6J1IM66 (60S acidic ribosomal protein P2-like OS=Cucurbita maxima OX=3661 GN=LOC111477740 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 8.1e-47
Identity = 110/112 (98.21%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60
           MKIVAAYLLA LGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE
Sbjct: 1   MKIVAAYLLADLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60

Query: 61  KMASISSVGSAIPVAAGGGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 113
           KMASISSVGSAIPVAAGGGGAASAAVAAEPV EDKKEVEEESEDEMCFSLFD
Sbjct: 61  KMASISSVGSAIPVAAGGGGAASAAVAAEPVKEDKKEVEEESEDEMCFSLFD 112

[Close]

BLAST of Carg10468 vs. ExPASy TrEMBL
Match: A0A0A0KKF6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G451490 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.2e-36
Identity = 89/115 (77.39%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60
           MKIVAAYLLA+LGGNTHPS+ DI AIL SVG+E EDERIELLLSQVKGKD+AE++A GRE
Sbjct: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60

Query: 61  KMASISSVGSAIPVAAG---GGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 113
           KMA +   GSAIPVAAG   GGGAA+A VAAEPV EDKKEV EES+++MCFSLFD
Sbjct: 61  KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD 115

[Close]

BLAST of Carg10468 vs. ExPASy TrEMBL
Match: A0A6J1CQB9 (60S acidic ribosomal protein P2A-like OS=Momordica charantia OX=3673 GN=LOC111013606 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 6.2e-31
Identity = 85/117 (72.65%), Postives = 95/117 (81.20%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60
           MKIVAAYLLAVLGGN  PSV+ I AILGSVG+EVED+RIELLLSQVKG DLAE++A GRE
Sbjct: 1   MKIVAAYLLAVLGGNNSPSVDHIKAILGSVGVEVEDDRIELLLSQVKGTDLAEIVACGRE 60

Query: 61  KMASISSVGSAI----PVAAGGGGAASAAVAAEP-VNEDKKEVEEESEDEMCFSLFD 113
           KMASI   G+AI    P AAGG   A A+VAAEP   EDKKEV EES+++MCFSLFD
Sbjct: 61  KMASIPCAGAAIAVGAPTAAGGAAPAVASVAAEPEKKEDKKEVVEESDEDMCFSLFD 117

[Close]

BLAST of Carg10468 vs. ExPASy TrEMBL
Match: A0A6S7L8U1 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS8810 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.5e-29
Identity = 78/113 (69.03%), Postives = 92/113 (81.42%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60
           MK+VAAYLLA+LGGNT PS ED+  ILGSVG E E++RIELLLS+VKGKD+ E+IASGRE
Sbjct: 35  MKVVAAYLLALLGGNTSPSAEDLKKILGSVGAEAEEDRIELLLSEVKGKDITELIASGRE 94

Query: 61  KMASISSVGSAIPV-AAGGGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 113
           K+AS+ S G  + V AA GGGAA AA AAEP  E+K E +EES+DEM FSLFD
Sbjct: 95  KLASVPSGGGGVAVAAAAGGGAAPAAAAAEPKKEEKVEEKEESDDEMGFSLFD 147

[Close]

BLAST of Carg10468 vs. TAIR 10
Match: AT2G27710.1 (60S acidic ribosomal protein family )

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-26
Identity = 69/115 (60.00%), Postives = 83/115 (72.17%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60
           MK+VAAYLLAVL G   P+  DI  ILGSVG E ED +IELLL +VKGKDLAE+IA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KMASISSVGS---AIPVAAGGGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 113
           K+AS+ S G    A+  A  GGG    A AAE   E+KKE +EES+D+M FSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Carg10468 vs. TAIR 10
Match: AT2G27710.2 (60S acidic ribosomal protein family )

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-26
Identity = 69/115 (60.00%), Postives = 83/115 (72.17%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60
           MK+VAAYLLAVL G   P+  DI  ILGSVG E ED +IELLL +VKGKDLAE+IA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KMASISSVGS---AIPVAAGGGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 113
           K+AS+ S G    A+  A  GGG    A AAE   E+KKE +EES+D+M FSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Carg10468 vs. TAIR 10
Match: AT2G27710.3 (60S acidic ribosomal protein family )

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-26
Identity = 69/115 (60.00%), Postives = 83/115 (72.17%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60
           MK+VAAYLLAVL G   P+  DI  ILGSVG E ED +IELLL +VKGKDLAE+IA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KMASISSVGS---AIPVAAGGGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 113
           K+AS+ S G    A+  A  GGG    A AAE   E+KKE +EES+D+M FSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Carg10468 vs. TAIR 10
Match: AT2G27720.1 (60S acidic ribosomal protein family )

HSP 1 Score: 114.4 bits (285), Expect = 6.0e-26
Identity = 68/115 (59.13%), Postives = 83/115 (72.17%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60
           MK+VAA+LLAVL G   P+  DI  ILGSVG E ED +IELLL +VKGKDLAE+IA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KMASISSVGS---AIPVAAGGGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 113
           K+AS+ S G    A+  A  GGG    A AAE   E+KKE +EES+D+M FSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEESDDDMGFSLFE 115

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BLAST of Carg10468 vs. TAIR 10
Match: AT2G27710.4 (60S acidic ribosomal protein family )

HSP 1 Score: 108.2 bits (269), Expect = 4.3e-24
Identity = 66/112 (58.93%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60
           MK+VAAYLLAVL G   P+  DI  ILGSVG E ED +IELLL +VKGKDLAE+IA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KMASISSVGSAIPVAAGGGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 113
           K+AS+ S          GGGA+    AAE   E+KKE +EES+D+M FSLF+
Sbjct: 61  KLASVPS----------GGGAS----AAESKKEEKKEEKEESDDDMGFSLFE 98

The following BLAST results are available for this feature:

BLAST of Carg10468 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925971.1	5.2e-48	100.00	60S acidic ribosomal protein P2-like [Cucurbita moschata] >XP_022925973.1 60S ac...	[more]
KAG6604363.1	1.2e-47	99.11	hypothetical protein SDJN03_04972, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022977389.1	1.7e-46	98.21	60S acidic ribosomal protein P2-like [Cucurbita maxima] >XP_022977390.1 60S acid...	[more]
XP_023543240.1	3.7e-46	97.32	60S acidic ribosomal protein P2-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_004143310.2	4.6e-36	77.39	60S acidic ribosomal protein P2 [Cucumis sativus] >KGN48246.1 hypothetical prote...	[more]

BLAST of Carg10468 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41099	1.3e-25	59.65	60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1	[more]
Q9SLF7	2.2e-25	60.00	60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 ...	[more]
P51407	8.4e-25	59.13	60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 ...	[more]
P46252	8.4e-25	58.93	60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3	[more]
O01725	1.6e-23	58.12	60S acidic ribosomal protein P2 OS=Branchiostoma floridae OX=7739 PE=3 SV=1	[more]

BLAST of Carg10468 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EDL3	2.5e-48	100.00	60S acidic ribosomal protein P2-like OS=Cucurbita moschata OX=3662 GN=LOC1114332...	[more]
A0A6J1IM66	8.1e-47	98.21	60S acidic ribosomal protein P2-like OS=Cucurbita maxima OX=3661 GN=LOC111477740...	[more]
A0A0A0KKF6	2.2e-36	77.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G451490 PE=3 SV=1	[more]
A0A6J1CQB9	6.2e-31	72.65	60S acidic ribosomal protein P2A-like OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A6S7L8U1	4.5e-29	69.03	Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS8810 PE=3 SV=1	[more]

BLAST of Carg10468 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27710.1	1.6e-26	60.00	60S acidic ribosomal protein family	[more]
AT2G27710.2	1.6e-26	60.00	60S acidic ribosomal protein family	[more]
AT2G27710.3	1.6e-26	60.00	60S acidic ribosomal protein family	[more]
AT2G27720.1	6.0e-26	59.13	60S acidic ribosomal protein family	[more]
AT2G27710.4	4.3e-24	58.93	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 1..59 e-value: 2.2E-26 score: 93.8
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 18..111 e-value: 1.8E-20 score: 73.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..112
None	No IPR available	PANTHER	PTHR21141:SF94	60S ACIDIC RIBOSOMAL PROTEIN P2-1	coord: 1..112
IPR044076	Ribosomal protein P2	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 1..112
IPR044076	Ribosomal protein P2	CDD	cd05833	Ribosomal_P2	coord: 1..71 e-value: 5.47018E-33 score: 109.275
IPR027534	Ribosomal protein L12/P1/P2 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 2..112 score: 14.738462

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10468-RA	Carg10468-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002182	cytoplasmic translational elongation
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome