Carg10418 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10418
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionHTH myb-type domain-containing protein
LocationCarg_Chr03: 8908275 .. 8911723 (+)
RNA-Seq ExpressionCarg10418
SyntenyCarg10418
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAACCTCTCTGCCATCGCTCTTTTGGCGGTTTAAAAGGATTGCATTTGTATTTTTTCTTCTTTTCGGTTTGGAACCTCTGACGCAACGCTCGCGTCTCTCCCCAATCCTCTAATCGAGCTGAACTCGGATCTTCAGCTTCCTTGCTGGTACTTCTCCTCTCCTCTGCGAATTTCGAATTTGTTGGTTTCTCTATTACTTTCTGCTTTAGATTCTGCCAGCTTACTGATCGATAGCTTTGATTCAGTGGACTCAATGGCGACTTGTAGTCAGTTTAAATTTACTGTTTGTTGGGCTTCCGGGTGAGGGAGGAAAGTGAAGCTCATAAGTTCTTCCTTTCTGTATTGTTTCCATTTTCTATTGCGTCAGATTGACCGTGCTGATTGACTCCGTGCATTCCACCTGCTATTTGTTCCTTTCTTACTTCCACACTCCGAAATCTCATTTTCTCCACCTCCGAACTCGAAATTTGATGCTTTATTCTGTCTGAACTGTATCTTTTCCCTTTCTGTATCCAATCACTGTCCGAGACTCTTTCGTTTGTGAATCTTCTGTGAAATTTGGTCAATCTTTAGTTTTGTCGTCATTTTCTTTTGCATTGCATGACTGTTGAAGGTTATGCGACTAACGCAGAAATTAGGATATGAATACTTTATATTTAGGAAATATGTATAATATAGACTTAAAAAAGGTAGATTATTTATTTATTTATTTAATTATGTTGCTTTATTTTCGTTGTTAATGACCTCGGTGGATTTAGTATAACAAGTTGATACGTTTTAAATTCTACAAAATGTCAGTCAAAAACACAATTGCTAAATAGGTGAAATTGCATGTTGTGAGTCAACATGTTTTGTATGGTAATTGTGAAAGCATAGTCATTTAAGTAGCGGAGTGGTTCATTTGTTACCTAGAAGAATAGGAAGATTATATCTTTAGTTATGTGGCGTGAGGGTGACTGGTTGCAGTGTAAATTGTAGTTTATTTTATTCATTATCAATGCTAGATAATGATCGCCAATTAGAACATAGTTGAGTGGATAAAGTATCTATTACCATTTCAAAGGTCATAGTTGAGTGGATAAAGTATCTATTACCATTTCAAAGGTCGATGATTTGATTCCCCTCTATAATGGTTGAACTAGAAAGAATAGTAGCTATTGACTATGTTGCGAACGTCTCCTTCCCATACCTGAAAGTTTGACCCAGAAGATGAGAAACTTCTTCAAATGGAACTTGTGAGTTACACCATTTTGAAAGGAACGAACTTGAAGTGCGCCTTTTCAACTTAATATCTCTGATGGTATTACATCAAGGATGTAGAAGACTTCAATGAAGTGTTTTATCCCAGTAGTTGATTCTCGTTCACAAGAATAATTATGTTGATATGCCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTGTGTGTGTGTGTGTGTGTTAGAGCTACTAATCCGTATCAGAACATGTAGGATTGAGCTTAAGAGTAAATGGATCAAGAAGTGCATTTCTGCCAGAAGTTCACAAATATGAATTATCATTGGGTGAGAAGCTTTCTATTATCAAGAAGTAACTTCTACATCTAACTGTTGTGAACACCTTGAATGTATACCTTATATTGCTTGCCTCATCCTTCCAACATTGATATGTGTGAATGATTTTGATGATTTGAGTCTAAATAATTGGAGAGTTTTTGTTATGTGGAAGACAAATAAATGCATGGTTATAAACTTCCAATGTATCGTTAGGTTCATATTGTGTAGATATCTAAACTTTGATAACATGATAATGTCCGCACCTTTGCTTAATATTGGAGAGTTCTTATTATGGAGGAACAAATATAATGCATGGTTCCAAACTTCCAATGTATCATTATGGGCATATTGTGTAAATATCTAAATTTTGATAACATGATAATTTCAACACCTTCGCCTATCTACCCTTGTTAACCTATGGAGGTGTTCTTTGTAATAATTTTCCGATAGAATCATGTTTTGTATCCCATTTCATCATATAAATGATTTCTTTCTGTTTTCTAAATATCTAAAAGAGATAATATGAGCACCTTTGTAAGTCCTCATCAATTTTTGCCTTATCAGTTCTATTACCTTTTTACAGCATAATATAAATACATATGAGAGAGAATGCAGATATGAATATGCCATAAAATTAAGAATATGCTGGTATAAACGTGCAATGAAATCTTTAGGTGGTTATAAATAGAGGAAATTAGAAACTTGGGAGAACAATTTTGGATATAGTTAGTGGAAGAGTTCATACCTCTTGAAGTGCTTTGAAAACTTGTCATTTTCTTTCTTAATTTCAGTACTATATTTTGGTATTTTTCATTAGTTTTGTAGTTTACGGGAGAGTCTAGGCCTGTCTTGAAGGTCTGGGAACACTTGTAGTTTTTCTTCTCATATCACTACTATTTTCTGTGAATTCCATTTTGATTCTTGTTTCCTATTAGAGTAGTAGTCATTTCAACACATATCTCCTCTCTAAACTGCTTTACTTTACTTTTTTTAATCTTGGTGTGATTTTTCATCAATTCCAAATTGGTAGTTTGTAAAATAAGATATGCTTCTCTGCATAATCACAATTTTAGCCTAACTTTTTTTTCTCTAGATATTATCTTTCTGACTTGTGGCGATTTGCTATTTTTTCTTCATAGGTAAAAATGGAGGGATCTTTTCTTCCTGCACCATTAAATGAATCAAATGAAGTCGATCATTTTCTTGTGGAGCCTAAAAGCGACCATGAATTAGGAAATTGCTTGAGAGTTCAAGATTTCTCTCGTGACTTTGGCTACGAAATACAAACAAATGGTGGTGAACTCTTATGATCCATTCCTTATGCTTTTATTAGTGCTAATTTGCACTCTACTCATTGGGCTTCTTCCATCCATGTTCTTTTGTTTTGGTATTTGTTGGCGAACTGTAGTCTTATCCTATTTTCCCTATAAGCTCAACATATAGAAAGGGTCTTTATTGGTCTGATGTGAATATGTTTTGGAAACCTTTCCTTGTATATGTGGACAAATCCAGAAAAGTGATGCTAATTATTGAGTTCAACATGCTTAGACATTTTAAATTTATTTTCCAATAATTTTTTTTTTTTACATCAGTAAGCAATCTAATCCTGGCCAATTTCTTTTATTACCTATAAGGTGGATTGGATTCTAATAGCAAGCAGGGACGCAAATATAAACTTGAATTGGAGTATGCTTCTATCTTATGATATTTTCATGTCATGCGAATTGATCATTTCATCATGTCTTAAAGTGGTAGAGAGGTTCAGCCTTTGAGAATCAAATGAGGGAAAGTATAGATGTTGATGTGCTAAATGGTTGTTTCTTAGACTTTGACCTCCTCATTGAAACTCTCTCCTCTTTTCGACCTTAAGGACCCAAGTTATTTGCCTATGAATCC

mRNA sequence

TAACCTCTCTGCCATCGCTCTTTTGGCGGTTTAAAAGGATTGCATTTGTATTTTTTCTTCTTTTCGGTTTGGAACCTCTGACGCAACGCTCGCGTCTCTCCCCAATCCTCTAATCGAGCTGAACTCGGATCTTCAGCTTCCTTGCTGGATTGAGCTTAAGAGTAAATGGATCAAGAAGTGCATTTCTGCCAGAAGTTCACAAATATGAATTATCATTGGGTAAAAATGGAGGGATCTTTTCTTCCTGCACCATTAAATGAATCAAATGAAGTCGATCATTTTCTTGTGGAGCCTAAAAGCGACCATGAATTAGGAAATTGCTTGAGAGTTCAAGATTTCTCTCGTGACTTTGGCTACGAAATACAAACAAATGGTGGTGAACTCTTATGATCCATTCCTTATGCTTTTATTAGTGCTAATTTGCACTCTACTCATTGGGCTTCTTCCATCCATGTTCTTTTGTTTTGGTATTTGTTGGCGAACTGTAGTCTTATCCTATTTTCCCTATAAGCTCAACATATAGAAAGGGTCTTTATTGGTCTGATGTGAATATGTTTTGGAAACCTTTCCTTGTATATGTGGACAAATCCAGAAAAGTGATGCTAATTATTGAGTTCAACATGCTTAGACATTTTAAATTTATTTTCCAATAATTTTTTTTTTTTACATCAGTAAGCAATCTAATCCTGGCCAATTTCTTTTATTACCTATAAGGTGGATTGGATTCTAATAGCAAGCAGGGACGCAAATATAAACTTGAATTGGAGTATGCTTCTATCTTATGATATTTTCATGTCATGCGAATTGATCATTTCATCATGTCTTAAAGTGGTAGAGAGGTTCAGCCTTTGAGAATCAAATGAGGGAAAGTATAGATGTTGATGTGCTAAATGGTTGTTTCTTAGACTTTGACCTCCTCATTGAAACTCTCTCCTCTTTTCGACCTTAAGGACCCAAGTTATTTGCCTATGAATCC

Coding sequence (CDS)

ATGGATCAAGAAGTGCATTTCTGCCAGAAGTTCACAAATATGAATTATCATTGGGTAAAAATGGAGGGATCTTTTCTTCCTGCACCATTAAATGAATCAAATGAAGTCGATCATTTTCTTGTGGAGCCTAAAAGCGACCATGAATTAGGAAATTGCTTGAGAGTTCAAGATTTCTCTCGTGACTTTGGCTACGAAATACAAACAAATGGTGGTGAACTCTTATGA

Protein sequence

MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSRDFGYEIQTNGGELL
Homology
[Close]
BLAST of Carg10418 vs. NCBI nr
Match: KAG7034563.1 (hypothetical protein SDJN02_04293 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164.9 bits (416), Expect = 2.7e-37
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR 60
          MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR
Sbjct: 1  MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR 60

Query: 61 DFGYEIQTNGGELL 75
          DFGYEIQTNGGELL
Sbjct: 61 DFGYEIQTNGGELL 74

[Close]
BLAST of Carg10418 vs. NCBI nr
Match: XP_022925803.1 (uncharacterized protein LOC111433102 isoform X2 [Cucurbita moschata])

HSP 1 Score: 156.8 bits (395), Expect = 7.4e-35
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 0 

Query: 1  MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR 60
          MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR
Sbjct: 1  MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR 60

Query: 61 DFGYEIQTNGGEL 74
          DFGYEIQTN  E+
Sbjct: 61 DFGYEIQTNDAEV 73

[Close]
BLAST of Carg10418 vs. NCBI nr
Match: XP_022925806.1 (uncharacterized protein LOC111433102 isoform X4 [Cucurbita moschata])

HSP 1 Score: 156.8 bits (395), Expect = 7.4e-35
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR 60
          MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR
Sbjct: 1  MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR 60

Query: 61 DFGYEIQTNG 71
          DFGYEIQTNG
Sbjct: 61 DFGYEIQTNG 70

[Close]
BLAST of Carg10418 vs. NCBI nr
Match: XP_022925801.1 (uncharacterized protein LOC111433102 isoform X1 [Cucurbita moschata] >XP_022925802.1 uncharacterized protein LOC111433102 isoform X1 [Cucurbita moschata])

HSP 1 Score: 156.8 bits (395), Expect = 7.4e-35
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR 60
          MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR
Sbjct: 1  MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR 60

Query: 61 DFGYEIQTNG 71
          DFGYEIQTNG
Sbjct: 61 DFGYEIQTNG 70

[Close]
BLAST of Carg10418 vs. NCBI nr
Match: XP_023543747.1 (uncharacterized protein LOC111803529 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.8 bits (395), Expect = 7.4e-35
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 0 

Query: 1  MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR 60
          MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR
Sbjct: 1  MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR 60

Query: 61 DFGYEIQTNGGEL 74
          DFGYEIQTN  E+
Sbjct: 61 DFGYEIQTNDAEV 73

[Close]
BLAST of Carg10418 vs. ExPASy TrEMBL
Match: A0A6J1ECM4 (uncharacterized protein LOC111433102 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433102 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.6e-35
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR 60
          MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR
Sbjct: 1  MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR 60

Query: 61 DFGYEIQTNG 71
          DFGYEIQTNG
Sbjct: 61 DFGYEIQTNG 70

[Close]
BLAST of Carg10418 vs. ExPASy TrEMBL
Match: A0A6J1ED68 (uncharacterized protein LOC111433102 isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111433102 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.6e-35
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR 60
          MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR
Sbjct: 1  MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR 60

Query: 61 DFGYEIQTNG 71
          DFGYEIQTNG
Sbjct: 61 DFGYEIQTNG 70

[Close]
BLAST of Carg10418 vs. ExPASy TrEMBL
Match: A0A6J1EGA3 (uncharacterized protein LOC111433102 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111433102 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.6e-35
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 0 

Query: 1  MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR 60
          MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR
Sbjct: 1  MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR 60

Query: 61 DFGYEIQTNGGEL 74
          DFGYEIQTN  E+
Sbjct: 61 DFGYEIQTNDAEV 73

[Close]
BLAST of Carg10418 vs. ExPASy TrEMBL
Match: A0A6J1IK21 (uncharacterized protein LOC111477818 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111477818 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.0e-34
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR 60
          MDQEVHFCQKFTNMNYHWVK+EGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR
Sbjct: 1  MDQEVHFCQKFTNMNYHWVKVEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR 60

Query: 61 DFGYEIQTNG 71
          DFGYEIQTNG
Sbjct: 61 DFGYEIQTNG 70

[Close]
BLAST of Carg10418 vs. ExPASy TrEMBL
Match: A0A6J1IIN6 (uncharacterized protein LOC111477818 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111477818 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.0e-34
Identity = 69/73 (94.52%), Postives = 71/73 (97.26%), Query Frame = 0 

Query: 1  MDQEVHFCQKFTNMNYHWVKMEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR 60
          MDQEVHFCQKFTNMNYHWVK+EGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR
Sbjct: 1  MDQEVHFCQKFTNMNYHWVKVEGSFLPAPLNESNEVDHFLVEPKSDHELGNCLRVQDFSR 60

Query: 61 DFGYEIQTNGGEL 74
          DFGYEIQTN  E+
Sbjct: 61 DFGYEIQTNDAEV 73

The following BLAST results are available for this feature:
BLAST of Carg10418 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7034563.12.7e-37100.00hypothetical protein SDJN02_04293 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022925803.17.4e-3595.89uncharacterized protein LOC111433102 isoform X2 [Cucurbita moschata][more]
XP_022925806.17.4e-35100.00uncharacterized protein LOC111433102 isoform X4 [Cucurbita moschata][more]
XP_022925801.17.4e-35100.00uncharacterized protein LOC111433102 isoform X1 [Cucurbita moschata] >XP_0229258... [more]
XP_023543747.17.4e-3595.89uncharacterized protein LOC111803529 isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg10418 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10418 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ECM43.6e-35100.00uncharacterized protein LOC111433102 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1ED683.6e-35100.00uncharacterized protein LOC111433102 isoform X4 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1EGA33.6e-3595.89uncharacterized protein LOC111433102 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1IK211.0e-3498.57uncharacterized protein LOC111477818 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1IIN61.0e-3494.52uncharacterized protein LOC111477818 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of Carg10418 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10418-RACarg10418-RAmRNA