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Carg10406 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAATTTAAACTATTTTCTGATTAAACCGGAAAATTCTTAACTTCATTCCTGGTTTTCATTTGCAGGCCTCTGGTGAGTCTTGTTTATCCTCTGTAAGTGGTTCTGCTTCTTTGTTTAACTTGCTATCCTTTTCATCAATGACGCCTTTAAACTGTTTGAGAGTTGTAATCCCGAAGTTGTTGCTCTGATTTTTGGTAATTGGCAGATATGCATCAGTTAGGGCCATTGAAACAAAGTCTCATGTGGACGATCAGCAATGGCTTACTTACTGGATTCTATATTCTATGCTCACCCTCTTTGAGCTTACATTTACAAAGGTTCTTGAATGGTAAATTTGCTTCTTTAGTTTAGAAATCACATATTGCTTGTTTTATCACGTCGTTCTGTGGTTTTCAATTTGTGAAAATAAAAGCATTCTCAAGTATATATGTGAGTTATTTTTTCTCATTATACTCATGTTAGCTAATTTGTTAGAGGTCATAAATTGAAATTTCAAATCATCCCACGTTGGTTGGAGAGGGGAAAACATTCCTTATAAGGGTGTGGAAACCTCTTCCTAATAGACGTATTTTAAAACTTTGAGGGGAATCCGAAAGCAAAAGCCTAAAGAGGACAATATATGCTAGCGGCGGGTTTGGGCTGTTACAAATGGTATCAGAGTCTGGTACCGTGCGGTGTGCCAGCGAGGACGTTGAGCCCCCAAGGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGAGAACAAAACATAACTTTTAAGGGTGTGGAAACCTCTTCTTAGTAGACGCGCTTTAAAACCTTGAGGGAAACCCCGAAAGGGAAAGCTCAAAGAGGACAATATCTGCTAGCGGTGGACTTGGGTTGTTACAAATGGTATCAGAGGCAGGCACCGGGCAGTGTGTTGTCGAGGACGTTGGGCCCCCAAGGGGGTGGATTGTGAGATCCTACATCAGTTGGAGAGAGAAATAAAGCATTTCTTATAAGGATGTGAAAATCTCTCCCTAGTAGATGCATTTTAAAACGTTGAGGGAAAATTTGGAGAGGACAATATTTGCTAGTGGAAGGCTTGGGCTATTACACATATGATTATGATAATTTTCTTTCTGAACCAGACATATATTGGTTCTTTTTTGGTGTACTTTTGAAATGCTGGTATTCATATTCATTATTGTTTGGTGCATCTAAATTGGAAGCTAGTTTGTTTTGTTATCTTGGCCATGCTCTGGATGCTTTAAGTCCATTTTGAAGATTATCTGGCTCTACTTGTTATGGTCTTTTACTTGTTTTAATTTTGGCTAATGACTCTCAACAAGGCCTCTGATGAATTTCCTTCCCCCCCTTAAATCTTTACAACAGGATCCCTATCTGGCCATATGCAAAGTTAATTTTGTCCTGCTGGTTGGTCATTCCATACTTCAGTGGTGCTGCATATGTGTACGAGCATTTCGTGAGGCCTCTATTCATCAACAAACAGACAGTTAACATTTGGTATGTTCCAAAGATGAAGGACTTCTTCAGCAAGCCCGACGACATCCTAACTGCTGCGGAGAAGTACATCGCCGAAAACGGTACTGAAGACCTCCAAAATATCATCAACAGGGTATAATACACTCTCATGACTCAGACTCAGCTCTCAAATGGTTGCTTAAATTATGAATTAGTGATTGTATGAATGAATCAATGCAGGCGTACGCAAGCAACCCATCAATTAGTTTAACTGACTTGCTGATACGTATGAATGCCTTTTCATTTTGTTTCTGTAGGCTGATAAGGCTCGGACAAGTAATCGTTACATGAGCTATTCTGAGGACCTCAACCATGACCATGACCACAACCACGAGTACTGGCACTAGTCTATATCATGTGTTGGAGGGGGGCAGAAGAGGATAATGTTTTGGCTGTCATCAGTTGAGGCTGTGTCATAGAGTTTGTTTATATGTTTGTGGTAAAATGCTTTGTATTGTTCATATGAAACTCTGAAAGATATAAACTTCTAACTAGATGGTCTATATTATTACGACTTCTTGAGCTTTGATGTCCTTTTTTGTTCTGCTCCTCACATTAACTTAACTTGTGGTTGGGGAAAAAAAGTGGTCATCGGCTTGGGTTGAGTACCTTTTTAGATCCGGACAATCGTTTTGGTCTTAAATGTAAGTCCAATCCTACCTCTAACAGATATTGTTCTCTTTGAATTTTTCCTTTTGGGTGAGGTTTCTACACTCGGGTAGAGAGTGCTTCGTTCTCTT CAATTTAAACTATTTTCTGATTAAACCGGAAAATTCTTAACTTCATTCCTGGTTTTCATTTGCAGGCCTCTGGTGAGTCTTGTTTATCCTCTGTAAGTGGTTCTGCTTCTTTGTTTAACTTGCTATCCTTTTCATCAATGACGCCTTTAAACTGTTTGAGAGTTGTAATCCCGAAGTTGTTGCTCTGATTTTTGGTAATTGGCAGATATGCATCAGTTAGGGCCATTGAAACAAAGTCTCATGTGGACGATCAGCAATGGCTTACTTACTGGATTCTATATTCTATGCTCACCCTCTTTGAGCTTACATTTACAAAGGTTCTTGAATGGATCCCTATCTGGCCATATGCAAAGTTAATTTTGTCCTGCTGGTTGGTCATTCCATACTTCAGTGGTGCTGCATATGTGTACGAGCATTTCGTGAGGCCTCTATTCATCAACAAACAGACAGTTAACATTTGGTATGTTCCAAAGATGAAGGACTTCTTCAGCAAGCCCGACGACATCCTAACTGCTGCGGAGAAGTACATCGCCGAAAACGGTACTGAAGACCTCCAAAATATCATCAACAGGGCTGATAAGGCTCGGACAAGTAATCGTTACATGAGCTATTCTGAGGACCTCAACCATGACCATGACCACAACCACGAGTACTGGCACTAGTCTATATCATGTGTTGGAGGGGGGCAGAAGAGGATAATGTTTTGGCTGTCATCAGTTGAGGCTGTGTCATAGAGTTTGTTTATATGTTTGTGGTAAAATGCTTTGTATTGTTCATATGAAACTCTGAAAGATATAAACTTCTAACTAGATGGTCTATATTATTACGACTTCTTGAGCTTTGATGTCCTTTTTTGTTCTGCTCCTCACATTAACTTAACTTGTGGTTGGGGAAAAAAAGTGGTCATCGGCTTGGGTTGAGTACCTTTTTAGATCCGGACAATCGTTTTGGTCTTAAATGTAAGTCCAATCCTACCTCTAACAGATATTGTTCTCTTTGAATTTTTCCTTTTGGGTGAGGTTTCTACACTCGGGTAGAGAGTGCTTCGTTCTCTT ATGCTCACCCTCTTTGAGCTTACATTTACAAAGGTTCTTGAATGGATCCCTATCTGGCCATATGCAAAGTTAATTTTGTCCTGCTGGTTGGTCATTCCATACTTCAGTGGTGCTGCATATGTGTACGAGCATTTCGTGAGGCCTCTATTCATCAACAAACAGACAGTTAACATTTGGTATGTTCCAAAGATGAAGGACTTCTTCAGCAAGCCCGACGACATCCTAACTGCTGCGGAGAAGTACATCGCCGAAAACGGTACTGAAGACCTCCAAAATATCATCAACAGGGCTGATAAGGCTCGGACAAGTAATCGTTACATGAGCTATTCTGAGGACCTCAACCATGACCATGACCACAACCACGAGTACTGGCACTAG MLTLFELTFTKVLEWIPIWPYAKLILSCWLVIPYFSGAAYVYEHFVRPLFINKQTVNIWYVPKMKDFFSKPDDILTAAEKYIAENGTEDLQNIINRADKARTSNRYMSYSEDLNHDHDHNHEYWH Homology
BLAST of Carg10406 vs. NCBI nr
Match: KAG6589501.1 (HVA22-like protein a, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 259.6 bits (662), Expect = 1.4e-65 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
BLAST of Carg10406 vs. NCBI nr
Match: KAG7023187.1 (HVA22-like protein a [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 259.6 bits (662), Expect = 1.4e-65 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
BLAST of Carg10406 vs. NCBI nr
Match: XP_022921802.1 (HVA22-like protein a [Cucurbita moschata]) HSP 1 Score: 257.3 bits (656), Expect = 6.8e-65 Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0
BLAST of Carg10406 vs. NCBI nr
Match: XP_023516077.1 (HVA22-like protein a [Cucurbita pepo subsp. pepo]) HSP 1 Score: 255.4 bits (651), Expect = 2.6e-64 Identity = 123/125 (98.40%), Postives = 124/125 (99.20%), Query Frame = 0
BLAST of Carg10406 vs. NCBI nr
Match: KAA0057935.1 (HVA22-like protein a [Cucumis melo var. makuwa] >TYJ98622.1 HVA22-like protein a [Cucumis melo var. makuwa]) HSP 1 Score: 246.5 bits (628), Expect = 1.2e-61 Identity = 118/125 (94.40%), Postives = 123/125 (98.40%), Query Frame = 0
BLAST of Carg10406 vs. ExPASy Swiss-Prot
Match: Q9S7V4 (HVA22-like protein a OS=Arabidopsis thaliana OX=3702 GN=HVA22A PE=2 SV=1) HSP 1 Score: 164.5 bits (415), Expect = 7.9e-40 Identity = 75/111 (67.57%), Postives = 93/111 (83.78%), Query Frame = 0
BLAST of Carg10406 vs. ExPASy Swiss-Prot
Match: Q9S784 (HVA22-like protein c OS=Arabidopsis thaliana OX=3702 GN=HVA22C PE=2 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 7.2e-25 Identity = 60/126 (47.62%), Postives = 84/126 (66.67%), Query Frame = 0
BLAST of Carg10406 vs. ExPASy Swiss-Prot
Match: Q9SYX7 (HVA22-like protein b OS=Arabidopsis thaliana OX=3702 GN=HVA22B PE=2 SV=2) HSP 1 Score: 96.3 bits (238), Expect = 2.6e-19 Identity = 50/111 (45.05%), Postives = 73/111 (65.77%), Query Frame = 0
BLAST of Carg10406 vs. ExPASy Swiss-Prot
Match: Q682H0 (HVA22-like protein f OS=Arabidopsis thaliana OX=3702 GN=HVA22F PE=2 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 2.9e-10 Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 0
BLAST of Carg10406 vs. ExPASy Swiss-Prot
Match: Q9FED2 (HVA22-like protein e OS=Arabidopsis thaliana OX=3702 GN=HVA22E PE=2 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 4.0e-07 Identity = 27/49 (55.10%), Postives = 32/49 (65.31%), Query Frame = 0
BLAST of Carg10406 vs. ExPASy TrEMBL
Match: A0A6J1E1G0 (HVA22-like protein OS=Cucurbita moschata OX=3662 GN=LOC111429946 PE=3 SV=1) HSP 1 Score: 257.3 bits (656), Expect = 3.3e-65 Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0
BLAST of Carg10406 vs. ExPASy TrEMBL
Match: A0A5A7UWG1 (HVA22-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G002450 PE=3 SV=1) HSP 1 Score: 246.5 bits (628), Expect = 5.8e-62 Identity = 118/125 (94.40%), Postives = 123/125 (98.40%), Query Frame = 0
BLAST of Carg10406 vs. ExPASy TrEMBL
Match: A0A6J1JI83 (HVA22-like protein OS=Cucurbita maxima OX=3661 GN=LOC111484825 PE=3 SV=1) HSP 1 Score: 245.7 bits (626), Expect = 9.9e-62 Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 0
BLAST of Carg10406 vs. ExPASy TrEMBL
Match: A0A1S3BWS9 (HVA22-like protein OS=Cucumis melo OX=3656 GN=LOC103493983 PE=3 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 2.9e-61 Identity = 119/125 (95.20%), Postives = 122/125 (97.60%), Query Frame = 0
BLAST of Carg10406 vs. ExPASy TrEMBL
Match: A0A0A0LUH0 (HVA22-like protein OS=Cucumis sativus OX=3659 GN=Csa_1G009650 PE=3 SV=1) HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59 Identity = 117/129 (90.70%), Postives = 122/129 (94.57%), Query Frame = 0
BLAST of Carg10406 vs. TAIR 10
Match: AT1G74520.1 (HVA22 homologue A ) HSP 1 Score: 164.5 bits (415), Expect = 5.6e-41 Identity = 75/111 (67.57%), Postives = 93/111 (83.78%), Query Frame = 0
BLAST of Carg10406 vs. TAIR 10
Match: AT1G69700.1 (HVA22 homologue C ) HSP 1 Score: 114.8 bits (286), Expect = 5.1e-26 Identity = 60/126 (47.62%), Postives = 84/126 (66.67%), Query Frame = 0
BLAST of Carg10406 vs. TAIR 10
Match: AT5G62490.1 (HVA22 homologue B ) HSP 1 Score: 96.3 bits (238), Expect = 1.9e-20 Identity = 50/111 (45.05%), Postives = 73/111 (65.77%), Query Frame = 0
BLAST of Carg10406 vs. TAIR 10
Match: AT2G42820.1 (HVA22-like protein F ) HSP 1 Score: 66.2 bits (160), Expect = 2.1e-11 Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 0
BLAST of Carg10406 vs. TAIR 10
Match: AT5G50720.1 (HVA22 homologue E ) HSP 1 Score: 55.8 bits (133), Expect = 2.8e-08 Identity = 27/49 (55.10%), Postives = 32/49 (65.31%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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