Carg10277 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10277
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr10: 196650 .. 197608 (+)
RNA-Seq ExpressionCarg10277
SyntenyCarg10277
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTCCGGCGATTCACATCTCACAGAAGGGATTTGCTGTACGTTATAATCTTTCCTTACATACCTTCGCTTTCTGCCATTTCAGGAATATGATCCGTCGCCATTGTTATTAGATTCTACTTCAATAGGATAGAACAATGTAGGGTTTTTGCCAGGGTTACTGAAAATTGGTGTATATGAAACTCTCTGATACCGTAACCAACTGCCCAAACTTTTCTTCGATTGATTTTGTTTCGTTATTGTTTTCCGTGGAGGGGGGTGGTTCCAATGTGAAAAGGGCTTTCTCTATCTTTCGTAATTTCATTCTCTCTAACGCTCCTTCTTGTTGTTCAGCATATGTGGAAGTGTATGGGAATGAGACTGTGCCTCTAATAGGATAATGATTAGTTTCTTCCTGATAAAATGAGATCAGGGTGATCAATGAACCAGCTGCCCTTCATAAGATTTGGTTCCAGCATCCAACCTACCAATGGATGATTAAACTCTTTAAGAACTGTAGCATGCTCCTTCTGGTACATTCTGATGAAGAATGTAGGTTCCACTATTGCTTTGTTTTTCCTATGTTTTGCTGTTGAAAATGGTCTTATTTAAAAGCTTTTTTTGTCTTCATTGTTGAGTTTTCTCGTTATGAAATTCTTGGATCTGATTGACTATCATAGATCTCTGATGGGGTAGAAAATGGATTTGATGGATTAGGCAAAACATTCATTGATATTTTTACATTTATAACTCTCGAGTGAAGCTGTTAATTGCTCCTGTCAATAAATTTCATAAATTTTGGCATGAATTTTGTGTCGCCTTCTCTGTCTATCTAAGTATTTTCCTTTATTCCTTTTCTGCTTTTAGGGCTTTCAAGGTTTTGGGTTATTTCTTGATGGTCTATCCAAGGATATTGGTGAATTTACATTGGAGAGCAATCACGTTGATTCGATTATGCTAGCACTTCCAGAAAAGTAG

mRNA sequence

ATGCTTTCCGGCGATTCACATCTCACAGAAGGGATTTGCTGTACGGTGATCAATGAACCAGCTGCCCTTCATAAGATTTGGTTCCAGCATCCAACCTACCAATGGATGATTAAACTCTTTAAGAACTGTAGCATGCTCCTTCTGGGCTTTCAAGGTTTTGGGTTATTTCTTGATGGTCTATCCAAGGATATTGGTGAATTTACATTGGAGAGCAATCACGTTGATTCGATTATGCTAGCACTTCCAGAAAAGTAG

Coding sequence (CDS)

ATGCTTTCCGGCGATTCACATCTCACAGAAGGGATTTGCTGTACGGTGATCAATGAACCAGCTGCCCTTCATAAGATTTGGTTCCAGCATCCAACCTACCAATGGATGATTAAACTCTTTAAGAACTGTAGCATGCTCCTTCTGGGCTTTCAAGGTTTTGGGTTATTTCTTGATGGTCTATCCAAGGATATTGGTGAATTTACATTGGAGAGCAATCACGTTGATTCGATTATGCTAGCACTTCCAGAAAAGTAG

Protein sequence

MLSGDSHLTEGICCTVINEPAALHKIWFQHPTYQWMIKLFKNCSMLLLGFQGFGLFLDGLSKDIGEFTLESNHVDSIMLALPEK
Homology
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BLAST of Carg10277 vs. NCBI nr
Match: KAG7023059.1 (hypothetical protein SDJN02_14083, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182.6 bits (462), Expect = 1.4e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MLSGDSHLTEGICCTVINEPAALHKIWFQHPTYQWMIKLFKNCSMLLLGFQGFGLFLDGL 60
          MLSGDSHLTEGICCTVINEPAALHKIWFQHPTYQWMIKLFKNCSMLLLGFQGFGLFLDGL
Sbjct: 1  MLSGDSHLTEGICCTVINEPAALHKIWFQHPTYQWMIKLFKNCSMLLLGFQGFGLFLDGL 60

Query: 61 SKDIGEFTLESNHVDSIMLALPEK 85
          SKDIGEFTLESNHVDSIMLALPEK
Sbjct: 61 SKDIGEFTLESNHVDSIMLALPEK 84

The following BLAST results are available for this feature:
BLAST of Carg10277 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7023059.11.4e-42100.00hypothetical protein SDJN02_14083, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg10277 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10277 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10277 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10277-RACarg10277-RAmRNA