Carg10254 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10254
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr10: 107760 .. 108102 (-)
RNA-Seq Expression	Carg10254
Synteny	Carg10254

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACTACCTTGGCGAGTAGCATTCCTTGGAGAACAAAAGAGAAAACAAACCCAGGACCCACCACACTTGTGATCACAGTTGCACCATCAGGCGTCCAGTTCCCAGAGGGGAAAAACTGGGCCAAACAACTAAATGCAGAATCTTTCCCATGTAAGACCCCAAGAGACGTTATTAAGAAACCAGAATGGTGAAAACAGTACACTACAGCCAGTGGAAACAGTTGAGTCGCATCCAAGAATATGCGGCCAGACATGGTTTATTTTTGCTTCTTTTGGTGTGTTGTAGCAAGACTCTTACTTCATTCAGCATATGAAAGACTATGGGGGAAAATCGCAGTAA

mRNA sequence

ATGGAGACTACCTTGGCGAGTAGCATTCCTTGGAGAACAAAAGAGAAAACAAACCCAGGACCCACCACACTTGTGATCACAGTTGCACCATCAGGCGTCCAGTTCCCAGAGGGGAAAAACTGGGCCAAACAACTAAATGCAGAATCTTTCCCATGTAAGACCCCAAGAGACCAAGACTCTTACTTCATTCAGCATATGAAAGACTATGGGGGAAAATCGCAGTAA

Coding sequence (CDS)

ATGGAGACTACCTTGGCGAGTAGCATTCCTTGGAGAACAAAAGAGAAAACAAACCCAGGACCCACCACACTTGTGATCACAGTTGCACCATCAGGCGTCCAGTTCCCAGAGGGGAAAAACTGGGCCAAACAACTAAATGCAGAATCTTTCCCATGTAAGACCCCAAGAGACCAAGACTCTTACTTCATTCAGCATATGAAAGACTATGGGGGAAAATCGCAGTAA

Protein sequence

METTLASSIPWRTKEKTNPGPTTLVITVAPSGVQFPEGKNWAKQLNAESFPCKTPRDQDSYFIQHMKDYGGKSQ

Homology

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BLAST of Carg10254 vs. NCBI nr
Match: KAG7023038.1 (hypothetical protein SDJN02_14060, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159.1 bits (401), Expect = 1.5e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  METTLASSIPWRTKEKTNPGPTTLVITVAPSGVQFPEGKNWAKQLNAESFPCKTPRDQDS 60
          METTLASSIPWRTKEKTNPGPTTLVITVAPSGVQFPEGKNWAKQLNAESFPCKTPRDQDS
Sbjct: 1  METTLASSIPWRTKEKTNPGPTTLVITVAPSGVQFPEGKNWAKQLNAESFPCKTPRDQDS 60

Query: 61 YFIQHMKDYGGKSQ 75
          YFIQHMKDYGGKSQ
Sbjct: 61 YFIQHMKDYGGKSQ 74

The following BLAST results are available for this feature:

BLAST of Carg10254 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023038.1	1.5e-35	100.00	hypothetical protein SDJN02_14060, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg10254 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg10254 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg10254 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10254-RA	Carg10254-RA	mRNA