Carg10180 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10180
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Cyclin
Location	Carg_Chr17: 265286 .. 266695 (+)
RNA-Seq Expression	Carg10180
Synteny	Carg10180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAAGAAGAAAGCTCCTCCATGATGCCAAAGCTCATCACTTTCCTCTCTTCTGTGCTTCAAAGAGTGGCCGAGTCGAACGACGATCTCGTGGACGATGACTCGGCCATCGAAACGCAGAAGAACTCGGCGTTCCATGGCTTGACTCGCCCATCTATCTCTCTTCATACCTACCTTGAAAGGATCTTCAAGTATGCCAATTGTAGCAACTCTTGCTTCATTGTTGCTTATGTTTATCTTGACCGCTTTGCTCAAAGGCAGCCATTGTTTCCTATCAACTCCTTTAATGTTCATCGTTTGCTCATTACAAGTGTTCTTGTTGCTGCCAAGTTCATGGATGATCTGTAAGTTTAATTTTCTTCTCTCTTTCCCCCCCTTTTTTGTAATATACAGTAATAATTGAGCTTTAGGACCTCCATTCGTTGTGTTACGAGTATCTATATGCATCTCGACTAATTTCATAAGATTCGTGCATGAACCTATAATATTTAAGAACCTCTGCAACTCCGTGATAATTGAATCTAAATCTTTAGAGGGTATACCAAAATGTGAGATTCTACATTGGTTGGAGAGAGGAATGAAGCATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCATTGAAAATCATGAAGCTAACGACAATACATAATGGGTAAAAGCGAATAATATCTGTCAGCCACTAGGCAGTGTGCCAACAAGAACGTTGGGTCCCCAAGAAGGGGGTAGATTGTGAGATTCCACGTTGATTAGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAAATGCGTTTGAAAACCATGCGGTTGATGACGATACGTAACGAGCCAAAGCGGACAATATATGCTAGCAGTAGGCTTGAACTATTACAAATGGTATTAGAGCCAGTCACCAGGCAGTGTGCCAACGAGGACGTTGGGTTCTCAAGAGGGGTGAATGGTAAGATTCCACATTAGTTGAAGAGGGAAACGAAACATTTCTTATAAGAGCATGAAAACCTCTCCCTAGTAGACACATTTTAAAACCGTGAGGCTGATTACGACACGTAACGGACTAAAACGGACATTATAATTTGAAAAGTTGGTTTTTGTTTTCAGGTGTTACAACAATGGTTTCTATGCAAGAGTTGGAGGGATCAGCACAAGAGAAATAAACTTTCTTGAAGTGGATTTCCTCTTTGGTTTAGGGTTTCACTTGAATGTGACACCCAACACATTCCACACCTATTGCTCTTGTTTACACAAAGAGATGCTTCAACTAAAACCTCCTCTTAGTAACTCTCTATTAACTTCTTCAGAAACATCACTAAATAAAGCTTCCCATTTGAGCTTTGAAGAAGATGAAGCTTCCCATCATCAAAACCAACACCAACTAGCTGCTTAA

mRNA sequence

ATGGTGGAAGAAGAAAGCTCCTCCATGATGCCAAAGCTCATCACTTTCCTCTCTTCTGTGCTTCAAAGAGTGGCCGAGTCGAACGACGATCTCGTGGACGATGACTCGGCCATCGAAACGCAGAAGAACTCGGCGTTCCATGGCTTGACTCGCCCATCTATCTCTCTTCATACCTACCTTGAAAGGATCTTCAAGTATGCCAATTGTAGCAACTCTTGCTTCATTGTTGCTTATGTTTATCTTGACCGCTTTGCTCAAAGGCAGCCATTGTTTCCTATCAACTCCTTTAATGTTCATCGTTTGCTCATTACAAGGTTTCACTTGAATGTGACACCCAACACATTCCACACCTATTGCTCTTGTTTACACAAAGAGATGCTTCAACTAAAACCTCCTCTTAGTAACTCTCTATTAACTTCTTCAGAAACATCACTAAATAAAGCTTCCCATTTGAGCTTTGAAGAAGATGAAGCTTCCCATCATCAAAACCAACACCAACTAGCTGCTTAA

Coding sequence (CDS)

ATGGTGGAAGAAGAAAGCTCCTCCATGATGCCAAAGCTCATCACTTTCCTCTCTTCTGTGCTTCAAAGAGTGGCCGAGTCGAACGACGATCTCGTGGACGATGACTCGGCCATCGAAACGCAGAAGAACTCGGCGTTCCATGGCTTGACTCGCCCATCTATCTCTCTTCATACCTACCTTGAAAGGATCTTCAAGTATGCCAATTGTAGCAACTCTTGCTTCATTGTTGCTTATGTTTATCTTGACCGCTTTGCTCAAAGGCAGCCATTGTTTCCTATCAACTCCTTTAATGTTCATCGTTTGCTCATTACAAGGTTTCACTTGAATGTGACACCCAACACATTCCACACCTATTGCTCTTGTTTACACAAAGAGATGCTTCAACTAAAACCTCCTCTTAGTAACTCTCTATTAACTTCTTCAGAAACATCACTAAATAAAGCTTCCCATTTGAGCTTTGAAGAAGATGAAGCTTCCCATCATCAAAACCAACACCAACTAGCTGCTTAA

Protein sequence

MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYLERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITRFHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLTSSETSLNKASHLSFEEDEASHHQNQHQLAA

Homology

[Close]

BLAST of Carg10180 vs. NCBI nr
Match: KAG7013394.1 (Cyclin-U4-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 332.4 bits (851), Expect = 2.3e-87
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60
           MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL
Sbjct: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60

Query: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITRFHLNVTPNTFHTYCS 120
           ERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITRFHLNVTPNTFHTYCS
Sbjct: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITRFHLNVTPNTFHTYCS 120

Query: 121 CLHKEMLQLKPPLSNSLLTSSETSLNKASHLSFEEDEASHHQNQHQLAA 170
           CLHKEMLQLKPPLSNSLLTSSETSLNKASHLSFEEDEASHHQNQHQLAA
Sbjct: 121 CLHKEMLQLKPPLSNSLLTSSETSLNKASHLSFEEDEASHHQNQHQLAA 169

[Close]

BLAST of Carg10180 vs. NCBI nr
Match: KAG6574814.1 (Cyclin-U4-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 307.8 bits (787), Expect = 5.9e-80
Identity = 167/210 (79.52%), Postives = 167/210 (79.52%), Query Frame = 0


Query: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60
           MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL
Sbjct: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60

Query: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR--------------- 120
           ERIFKYANCSNSCFIVAYVYLDRFAQRQPL PINSFNVHRLLIT                
Sbjct: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLLPINSFNVHRLLITSVLVAAKFMDDLCYNN 120

Query: 121 --------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLT 170
                                     FHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLT
Sbjct: 121 GFYARVGGISTREINFLEVDFLFGLGFHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLT 180

[Close]

BLAST of Carg10180 vs. NCBI nr
Match: XP_022958930.1 (cyclin-U4-1-like [Cucurbita moschata])

HSP 1 Score: 306.6 bits (784), Expect = 1.3e-79
Identity = 166/210 (79.05%), Postives = 167/210 (79.52%), Query Frame = 0


Query: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60
           MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL
Sbjct: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60

Query: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR--------------- 120
           ERIFKYANCSNSCFIVAYVYLDRFAQRQPL PINSFNVHRLLIT                
Sbjct: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLLPINSFNVHRLLITSVLVAAKFMDDLCYNN 120

Query: 121 --------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLT 170
                                     FHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLT
Sbjct: 121 GFYARVGGISTREINFLEVDFLFGLGFHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLT 180

[Close]

BLAST of Carg10180 vs. NCBI nr
Match: XP_023548896.1 (cyclin-U4-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 303.9 bits (777), Expect = 8.6e-79
Identity = 165/210 (78.57%), Postives = 166/210 (79.05%), Query Frame = 0


Query: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60
           MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL
Sbjct: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60

Query: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR--------------- 120
           ERIFKYANCSNSCFIVAYVYLDRFAQRQPL PINSFNVHRLLIT                
Sbjct: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLLPINSFNVHRLLITSVLVAAKFMDDLCYNN 120

Query: 121 --------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLT 170
                                     FHLNVTPNTFHTYCSCLHKEML LKPPLSNSLLT
Sbjct: 121 GFYARVGGISTKEINFLEVDFLFGLGFHLNVTPNTFHTYCSCLHKEMLLLKPPLSNSLLT 180

[Close]

BLAST of Carg10180 vs. NCBI nr
Match: XP_023006685.1 (cyclin-U4-1-like [Cucurbita maxima])

HSP 1 Score: 300.4 bits (768), Expect = 9.5e-78
Identity = 163/210 (77.62%), Postives = 165/210 (78.57%), Query Frame = 0


Query: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60
           MVEEESSSMMPKLITFLSSVLQRVAESND+LVDDDSAIETQKNSAFHGLTRPSISLHTYL
Sbjct: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDNLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60

Query: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR--------------- 120
           ERIFKY NCSNSCFIVAYVYLDRFAQRQPL PINSFNVHRLLIT                
Sbjct: 61  ERIFKYVNCSNSCFIVAYVYLDRFAQRQPLLPINSFNVHRLLITSVLVAAKFMDDLCYNN 120

Query: 121 --------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLT 170
                                     FHLNVTPNTFHTYCSCLHKEML LKPPLSNSLLT
Sbjct: 121 GFYARVGGISTREINFLEVDFLFGLGFHLNVTPNTFHTYCSCLHKEMLLLKPPLSNSLLT 180

[Close]

BLAST of Carg10180 vs. ExPASy Swiss-Prot
Match: O80513 (Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.0e-37
Identity = 101/210 (48.10%), Postives = 123/210 (58.57%), Query Frame = 0


Query: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60
           M E E+ S+M KLI FLSS+L+RVAESND  +    A ++Q+ S FHGL+RP+I++ +YL
Sbjct: 1   MAELENPSVMSKLIAFLSSLLERVAESND--LTRRVATQSQRVSVFHGLSRPTITIQSYL 60

Query: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR--------------- 120
           ERIFKYANCS SCF+VAYVYLDRF  RQP  PINSFNVHRLLIT                
Sbjct: 61  ERIFKYANCSPSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYYNN 120

Query: 121 --------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLT 170
                                     F LNVTPNTF+ Y S L KEM  L+ PLS  ++ 
Sbjct: 121 AYYAKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTLLQ-PLSLVVVP 180

[Close]

BLAST of Carg10180 vs. ExPASy Swiss-Prot
Match: Q9FKF6 (Cyclin-U4-3 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-3 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.4e-31
Identity = 89/214 (41.59%), Postives = 118/214 (55.14%), Query Frame = 0


Query: 2   VEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYLE 61
           ++E  + +MP ++T +S +LQRV+E+ND+L       + QK S+F G+T+PSIS+ +YLE
Sbjct: 14  LQEPLAEIMPSVLTAMSYLLQRVSETNDNL------SQKQKPSSFTGVTKPSISIRSYLE 73

Query: 62  RIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR---------------- 121
           RIF+YANCS SC+IVAY+YLDRF ++QP  PINSFNVHRL+IT                 
Sbjct: 74  RIFEYANCSYSCYIVAYIYLDRFVKKQPFLPINSFNVHRLIITSVLVSAKFMDDLSYNNE 133

Query: 122 -------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLS-----N 170
                                    F LNVT +TF+ YC  L +EM  L    S     +
Sbjct: 134 YYAKVGGISREEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREMAMLMKMKSLFLEPS 193

[Close]

BLAST of Carg10180 vs. ExPASy Swiss-Prot
Match: Q9LY16 (Cyclin-U4-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-2 PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.9e-28
Identity = 72/166 (43.37%), Postives = 100/166 (60.24%), Query Frame = 0


Query: 3   EEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYLER 62
           +E  + +MP +IT +SS+LQRV+E+NDDL       E ++ SAF+ +T+PSIS+ +Y+ER
Sbjct: 13  QEPMAEIMPNVITAMSSLLQRVSETNDDL--SRPFREHKRISAFNAVTKPSISIRSYMER 72

Query: 63  IFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR----------------- 122
           IFKYA+CS+SC+IVAY+YLDRF Q+QPL PI+S NVHRL+IT                  
Sbjct: 73  IFKYADCSDSCYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAF 132

Query: 123 ------------------------FHLNVTPNTFHTYCSCLHKEML 128
                                   F LNVT +T++ YCS L +EM+
Sbjct: 133 YAKVGGITTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREMV 176

[Close]

BLAST of Carg10180 vs. ExPASy Swiss-Prot
Match: Q7XC35 (Cyclin-P4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP4-1 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.8e-24
Identity = 78/208 (37.50%), Postives = 106/208 (50.96%), Query Frame = 0


Query: 5   ESSSMMPKLITFLSSVLQRVAESNDDLVDDDS-AIETQKNSAFHGLTRPSISLHTYLERI 64
           E +  +P+++  LSS+LQRVAE ND      +   E    SAF GLT+P+IS+  YLERI
Sbjct: 5   EVAEAVPRVVAILSSLLQRVAERNDAAAAAAAVGEEAAAVSAFQGLTKPAISIGGYLERI 64

Query: 65  FKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLIT------------------- 124
           F++ANCS SC++VAY+YLDRF +R+P   ++SFNVHRLLIT                   
Sbjct: 65  FRFANCSPSCYVVAYIYLDRFLRRRPALAVDSFNVHRLLITSVLTAVKFVDDICYNNAYF 124

Query: 125 ----------------------RFHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSL--LTS 169
                                  F LNVTP  F +YC+ L  EM  L+ P +  L  L  
Sbjct: 125 ARVGGISLMEMNYLEVDFLFGIAFDLNVTPAAFASYCAVLQSEMTYLEQPPAVDLPRLHC 184

[Close]

BLAST of Carg10180 vs. ExPASy Swiss-Prot
Match: Q9LJ45 (Cyclin-U1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU1-1 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.8e-16
Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = 0


Query: 3   EEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYLER 62
           E  + +  P+++T +S V++++   N+ L         +   AFHG+  PSIS+  YLER
Sbjct: 17  ESATEAATPRVLTIISHVMEKLVARNEWLAKQTKGF-GKSLEAFHGVRAPSISIAKYLER 76

Query: 63  IFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLIT 105
           I+KY  CS +CF+V YVY+DR A + P   + S NVHRLL+T
Sbjct: 77  IYKYTKCSPACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVT 117

[Close]

BLAST of Carg10180 vs. ExPASy TrEMBL
Match: A0A6J1H4V3 (Cyclin OS=Cucurbita moschata OX=3662 GN=LOC111460076 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 6.4e-80
Identity = 166/210 (79.05%), Postives = 167/210 (79.52%), Query Frame = 0


Query: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60
           MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL
Sbjct: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60

Query: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR--------------- 120
           ERIFKYANCSNSCFIVAYVYLDRFAQRQPL PINSFNVHRLLIT                
Sbjct: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLLPINSFNVHRLLITSVLVAAKFMDDLCYNN 120

Query: 121 --------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLT 170
                                     FHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLT
Sbjct: 121 GFYARVGGISTREINFLEVDFLFGLGFHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLT 180

[Close]

BLAST of Carg10180 vs. ExPASy TrEMBL
Match: A0A6J1L0U3 (Cyclin OS=Cucurbita maxima OX=3661 GN=LOC111499346 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.6e-78
Identity = 163/210 (77.62%), Postives = 165/210 (78.57%), Query Frame = 0


Query: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60
           MVEEESSSMMPKLITFLSSVLQRVAESND+LVDDDSAIETQKNSAFHGLTRPSISLHTYL
Sbjct: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDNLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60

Query: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR--------------- 120
           ERIFKY NCSNSCFIVAYVYLDRFAQRQPL PINSFNVHRLLIT                
Sbjct: 61  ERIFKYVNCSNSCFIVAYVYLDRFAQRQPLLPINSFNVHRLLITSVLVAAKFMDDLCYNN 120

Query: 121 --------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLT 170
                                     FHLNVTPNTFHTYCSCLHKEML LKPPLSNSLLT
Sbjct: 121 GFYARVGGISTREINFLEVDFLFGLGFHLNVTPNTFHTYCSCLHKEMLLLKPPLSNSLLT 180

[Close]

BLAST of Carg10180 vs. ExPASy TrEMBL
Match: A0A6J1DQ51 (Cyclin OS=Momordica charantia OX=3673 GN=LOC111022783 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 8.4e-56
Identity = 133/207 (64.25%), Postives = 144/207 (69.57%), Query Frame = 0


Query: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60
           MVE ES+SMMPKLITFLSSVLQRVAESND L   DSAIETQK+SAFHGLTRP ISLH+YL
Sbjct: 1   MVEGESTSMMPKLITFLSSVLQRVAESNDHL---DSAIETQKSSAFHGLTRPGISLHSYL 60

Query: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR--------------- 120
           ERI KYANCSNSCFIVAYVYLDRFAQRQPL PINS+NVHRLLIT                
Sbjct: 61  ERILKYANCSNSCFIVAYVYLDRFAQRQPLLPINSYNVHRLLITSVLVAAKFMDDRCYNN 120

Query: 121 --------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSL-- 165
                                     FHLNVTPNTFHTYCS L KEML  +PPL++ +  
Sbjct: 121 AFYARVGGISTTEINFLEVDFLFGLGFHLNVTPNTFHTYCSSLQKEMLLQQPPLTSPITS 180

[Close]

BLAST of Carg10180 vs. ExPASy TrEMBL
Match: A0A1S4E2M4 (cyclin-U4-1-like OS=Cucumis melo OX=3656 GN=LOC103498997 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 6.9e-50
Identity = 126/216 (58.33%), Postives = 138/216 (63.89%), Query Frame = 0


Query: 3   EEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYLER 62
           EE +S  MPKLITFLSSVLQRVAESNDDL D+D A ETQKNSAFHGLTRPSISL +YLER
Sbjct: 124 EESTSCSMPKLITFLSSVLQRVAESNDDLDDNDLATETQKNSAFHGLTRPSISLQSYLER 183

Query: 63  IFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR----------------- 122
           IFKYANCSNSCFIVAYVYLDRFAQ+QPL PINS+NVHRLLIT                  
Sbjct: 184 IFKYANCSNSCFIVAYVYLDRFAQKQPLLPINSYNVHRLLITSVLVAAKFMDDLCYNNAF 243

Query: 123 ------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLSN-SLLT- 167
                                   F LNVTP TFHTY SCL  E+  L PP SN S+LT 
Sbjct: 244 YARVGGISTREINFLEVDFLFGLGFELNVTPTTFHTYSSCLQNEIFLLHPPFSNISMLTP 303

[Close]

BLAST of Carg10180 vs. ExPASy TrEMBL
Match: A0A0A0KER4 (Cyclin OS=Cucumis sativus OX=3659 GN=Csa_6G078670 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.9e-48
Identity = 125/219 (57.08%), Postives = 140/219 (63.93%), Query Frame = 0


Query: 1   MVEEESSS-MMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTY 60
           MVE+ES+S  MPKLITFLSSVLQRVAESNDDL ++DSA ETQKNSAFHGLTRPSISL +Y
Sbjct: 1   MVEQESTSCSMPKLITFLSSVLQRVAESNDDLDNNDSATETQKNSAFHGLTRPSISLQSY 60

Query: 61  LERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR-------------- 120
           LERIFKYANCSNSCFIVAYVYLDRFAQ+QPL PINS+NVHRLLIT               
Sbjct: 61  LERIFKYANCSNSCFIVAYVYLDRFAQKQPLLPINSYNVHRLLITSVLVAAKFMDDLCYN 120

Query: 121 ---------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLSN-SL 167
                                      F LNVTP TFHTY SCL  E+  L PP +N S+
Sbjct: 121 NAFYARVGGISTREINFLEVDFLFGLGFELNVTPTTFHTYSSCLQNEIFLLNPPFTNISI 180

[Close]

BLAST of Carg10180 vs. TAIR 10
Match: AT2G44740.1 (cyclin p4;1 )

HSP 1 Score: 155.6 bits (392), Expect = 3.5e-38
Identity = 101/210 (48.10%), Postives = 123/210 (58.57%), Query Frame = 0


Query: 1   MVEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYL 60
           M E E+ S+M KLI FLSS+L+RVAESND  +    A ++Q+ S FHGL+RP+I++ +YL
Sbjct: 1   MAELENPSVMSKLIAFLSSLLERVAESND--LTRRVATQSQRVSVFHGLSRPTITIQSYL 60

Query: 61  ERIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR--------------- 120
           ERIFKYANCS SCF+VAYVYLDRF  RQP  PINSFNVHRLLIT                
Sbjct: 61  ERIFKYANCSPSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYYNN 120

Query: 121 --------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLSNSLLT 170
                                     F LNVTPNTF+ Y S L KEM  L+ PLS  ++ 
Sbjct: 121 AYYAKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTLLQ-PLSLVVVP 180

[Close]

BLAST of Carg10180 vs. TAIR 10
Match: AT5G61650.1 (CYCLIN P4;2 )

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-32
Identity = 89/214 (41.59%), Postives = 118/214 (55.14%), Query Frame = 0


Query: 2   VEEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYLE 61
           ++E  + +MP ++T +S +LQRV+E+ND+L       + QK S+F G+T+PSIS+ +YLE
Sbjct: 14  LQEPLAEIMPSVLTAMSYLLQRVSETNDNL------SQKQKPSSFTGVTKPSISIRSYLE 73

Query: 62  RIFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR---------------- 121
           RIF+YANCS SC+IVAY+YLDRF ++QP  PINSFNVHRL+IT                 
Sbjct: 74  RIFEYANCSYSCYIVAYIYLDRFVKKQPFLPINSFNVHRLIITSVLVSAKFMDDLSYNNE 133

Query: 122 -------------------------FHLNVTPNTFHTYCSCLHKEMLQLKPPLS-----N 170
                                    F LNVT +TF+ YC  L +EM  L    S     +
Sbjct: 134 YYAKVGGISREEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREMAMLMKMKSLFLEPS 193

[Close]

BLAST of Carg10180 vs. TAIR 10
Match: AT5G07450.1 (cyclin p4;3 )

HSP 1 Score: 127.1 bits (318), Expect = 1.3e-29
Identity = 72/166 (43.37%), Postives = 100/166 (60.24%), Query Frame = 0


Query: 3   EEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYLER 62
           +E  + +MP +IT +SS+LQRV+E+NDDL       E ++ SAF+ +T+PSIS+ +Y+ER
Sbjct: 13  QEPMAEIMPNVITAMSSLLQRVSETNDDL--SRPFREHKRISAFNAVTKPSISIRSYMER 72

Query: 63  IFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLITR----------------- 122
           IFKYA+CS+SC+IVAY+YLDRF Q+QPL PI+S NVHRL+IT                  
Sbjct: 73  IFKYADCSDSCYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAF 132

Query: 123 ------------------------FHLNVTPNTFHTYCSCLHKEML 128
                                   F LNVT +T++ YCS L +EM+
Sbjct: 133 YAKVGGITTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREMV 176

[Close]

BLAST of Carg10180 vs. TAIR 10
Match: AT3G21870.1 (cyclin p2;1 )

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-17
Identity = 42/102 (41.18%), Postives = 63/102 (61.76%), Query Frame = 0


Query: 3   EEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSAFHGLTRPSISLHTYLER 62
           E  + +  P+++T +S V++++   N+ L         +   AFHG+  PSIS+  YLER
Sbjct: 17  ESATEAATPRVLTIISHVMEKLVARNEWLAKQTKGF-GKSLEAFHGVRAPSISIAKYLER 76

Query: 63  IFKYANCSNSCFIVAYVYLDRFAQRQPLFPINSFNVHRLLIT 105
           I+KY  CS +CF+V YVY+DR A + P   + S NVHRLL+T
Sbjct: 77  IYKYTKCSPACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVT 117

[Close]

BLAST of Carg10180 vs. TAIR 10
Match: AT3G05327.1 (Cyclin family protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-12
Identity = 41/111 (36.94%), Postives = 60/111 (54.05%), Query Frame = 0


Query: 3   EEESSSMMPKLITFLSSVLQRVAESNDDLVDDDSAIETQKNSA-----FHGLTRPSISLH 62
           ++   S  P++IT L+S L+++ + N           T+ N A     FHG   PS+S++
Sbjct: 23  DQPPDSTPPRVITLLASTLEKMIQKN------KKKFHTRHNKADEITMFHGSKAPSLSIY 82

Query: 63  TYLERIFKYANCSNSCFIVAYVYLDRFAQRQPLFP----INSFNVHRLLIT 105
            Y ERI +YA CS  CF+ A+ Y+ R+ QR         + S NVHRLLIT
Sbjct: 83  RYTERIHRYAQCSPVCFVAAFAYILRYLQRPEATSTARRLTSLNVHRLLIT 127

The following BLAST results are available for this feature:

BLAST of Carg10180 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013394.1	2.3e-87	100.00	Cyclin-U4-1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6574814.1	5.9e-80	79.52	Cyclin-U4-1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022958930.1	1.3e-79	79.05	cyclin-U4-1-like [Cucurbita moschata]	[more]
XP_023548896.1	8.6e-79	78.57	cyclin-U4-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_023006685.1	9.5e-78	77.62	cyclin-U4-1-like [Cucurbita maxima]	[more]

BLAST of Carg10180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80513	5.0e-37	48.10	Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1	[more]
Q9FKF6	2.4e-31	41.59	Cyclin-U4-3 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-3 PE=1 SV=1	[more]
Q9LY16	1.9e-28	43.37	Cyclin-U4-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-2 PE=1 SV=1	[more]
Q7XC35	2.8e-24	37.50	Cyclin-P4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP4-1 PE=2 SV=1	[more]
Q9LJ45	2.8e-16	41.18	Cyclin-U1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU1-1 PE=1 SV=1	[more]

BLAST of Carg10180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H4V3	6.4e-80	79.05	Cyclin OS=Cucurbita moschata OX=3662 GN=LOC111460076 PE=3 SV=1	[more]
A0A6J1L0U3	4.6e-78	77.62	Cyclin OS=Cucurbita maxima OX=3661 GN=LOC111499346 PE=3 SV=1	[more]
A0A6J1DQ51	8.4e-56	64.25	Cyclin OS=Momordica charantia OX=3673 GN=LOC111022783 PE=3 SV=1	[more]
A0A1S4E2M4	6.9e-50	58.33	cyclin-U4-1-like OS=Cucumis melo OX=3656 GN=LOC103498997 PE=3 SV=1	[more]
A0A0A0KER4	2.9e-48	57.08	Cyclin OS=Cucumis sativus OX=3659 GN=Csa_6G078670 PE=3 SV=1	[more]

BLAST of Carg10180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44740.1	3.5e-38	48.10	cyclin p4;1	[more]
AT5G61650.1	1.7e-32	41.59	CYCLIN P4;2	[more]
AT5G07450.1	1.3e-29	43.37	cyclin p4;3	[more]
AT3G21870.1	2.0e-17	41.18	cyclin p2;1	[more]
AT3G05327.1	1.1e-12	36.94	Cyclin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013922	Cyclin PHO80-like	PFAM	PF08613	Cyclin	coord: 39..106 e-value: 4.7E-16 score: 59.6
IPR012389	Cyclin P/U	PIRSF	PIRSF027110	PREG	coord: 1..106 e-value: 1.2E-37 score: 127.6 coord: 104..168 e-value: 1.7E-5 score: 22.5
None	No IPR available	GENE3D	1.10.472.10		coord: 3..105 e-value: 1.1E-28 score: 102.1
None	No IPR available	PANTHER	PTHR15615:SF102	CYCLIN	coord: 1..104 coord: 106..162
None	No IPR available	PANTHER	PTHR15615	UNCHARACTERIZED	coord: 1..104 coord: 106..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10180-RA	Carg10180-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity
molecular_function	GO:0019901	protein kinase binding