Carg10148 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10148
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr17: 493035 .. 496101 (+)
RNA-Seq ExpressionCarg10148
SyntenyCarg10148
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATAAACAATAAAGTTAGTGATAGAGATTGCGATTTCGACCTGTTTTTGAAGCGTCTTGCTGCTGCAATGGCTTCCATCGGAGAGAAGAGTGAAAGGATCCAAAGTAGAGGAAAACGAGATGCAAAACAAGAGAATTCCGGGGAAGAAAAGAGACAACTAAATCACATAATGTCCGACGTAAAGCTTAGGAAAATCCATGGAAATGCGGTGGAAGAACGAGAAGAACGGTTGGATTTTAGGAATTCGCCTCGTGATCTCTGGCTGAACGAAACTCCAGTGAGCGCCATAATTAATTAAAGTATTTAAGTATTTATTTATTTATATTTAAAGTTTGGGCCACTTGATTGCAAAAGTCCAGGCCCAATAACGGCCCACGATCCATCTACAAGTGAGACCAATTTCCTTCACCATCTCACCGTCCATTATGCAAAGAATCTGAACCGTCCAGCTCGAGTACACGAACTTCGGCCCTAAAATTTCCCAATCAGAAAGCCATTCAAAAATATATTTGAATTTTCAAAAATTATTTTTTAAAAACTTTTAAATTTCTTTAAAAAAATAATATTAAACAATTTTCATCCATAAATTAACGATAATTTTTTTTTATGTTATAAAGGTTAACGATGTTAATGCTAATTTTAAAATTTTATAGGTATTTTTTAAATATAATAATTTTTTTTAATTTTTTTAAAGATATATTAATATATATTTATGAAATAAATTTATTTTCCATTCATTTTTTATTAATTTAGGTATAAATTAAATACCAAAATAATATAAATTAAAAAGAAATAGCCGATTTTTTCCCCCTTAGGAATGCAATTAATAACAGTTCGAGGATGAAGACGACCCCCCGCCATAACGTATTCCTCATTTTCCTCCATAACTTTCGTATTTTTCGATTCCTAATCTACCCTTCTTCTTCATCCAATACTCCCGGTTTCTTCTTGGTTTTCGCTCGCAATCAATGTCCTCTTAATCGAGGTTAGTTCTTTCTAAACCCTTCTCTTTTGTAATGTTTTTGGGATTTTATGAAAATTTCCCCCTCCTAATTGCCTTCTTCATTCATCTTTCTATCTCTGGAGTATGTAATTTCCCCCCCTTTCTAATGCTTTTATAATTTTTCTTTTTTTGAAACTGTTTAATCTGTCATATTATGATCTGGGTTGTTTGCATTTTCTTATTAAGTTGTGGAAATAATGGACAGTTTTGTTTGAATCACTGTTATGTTTGGTGATTCCATTAATTTCTACTTTGTTTCTGCTCTGATTAGTGATTTTCATTGTGGGGTTTCTTTATTTTAGTGAATGGAGTGTTCCCCCCACCTTCGAACCCAAACCCCATCTGTTCATTCATAATAGCATCTCCTTTGGATTTCTTTGTCTGTGTTTTTAGGGTTGTATGAAGAATCTGCAACTTTTGAAAGCTGATTTAGTGTCAGATAATGGGGAAATAGATAGGGAGAAGAAGAAGAAGAAAGCACTTTTTTGGGTTTGTCAACATAGAGGAGACAATGGTTTAATAACCCATTAGATATCTTTGGAATGACAGGGAAAGGTGCATAGCTCTGTACTAGCCCTGAAACTTTCCCAGCGAGATTTATTGCAATGGCCTTAATGGGAGGCTTTTCTCATCGCCTCTGTATGAAAAGGGTCTGGCTTCTGGGTGGTTCTTTGGTTTCAGCCCCTTGATTCTCTTAGAGGAATTCATGGCTGTGACAGCTTTGCTGTACTATTTGCTTTTTTGGGTATTTGAATCTCTACTTTGAGTTATTTCATGTGAGATCACACCTCGGTTGGAGAGGGGGAACGAATCATTCTTTATAACGGTGTGGAAACCTCTCACTAGTAGAAGCGTTTTAAAACCGTGAGGCTGATGGCTATACGTAACGGGTCAAATACTATATGCTAGCGGTAGGCTTGGGTTTGTTCAGGTAGTTGTGGTGTTTCTTGTTATCTTGGTTCTGAACTTTCGATTTGCATGATAGTGATTTTGAAGTGATTTTGAAGGGAGTGGGGTGGGGTTATTTATCTATCTCTATTGAAGCTTCTGTTGTTTTTGTGTCCATTTATGAATCTTTGTATCATGCATTGCAGTTGATTCAATCTTCTACTGAGTGTCATTGCTTACTCCTTCAACATTTGAGTCTCCCCAGCCATCTTCAATGGAGCAAATTTTCTAGAGGAACCTAACTCAACGGCTCGAGAACAGATTCCAGCTTCAATTATCACTTGTAGACCCTTTTGAATTGCTTATGACCTTGGCTACATCAACTTCTTGAATGTAAGGTATCGCTTTAGCCAAGGTAGAATGACATCCCCTTCAGCAGTCTTGATAATTTGCCCCTACTCTAATTGTGAGATCCCACGTCGGTTGGGGAGGAGAACGAAATATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGAGACCGCGTTTTAAAAACCTTAAGGGGAAGTCCGAAAGGGGAAGCCCAAAGAGCAACGTTGCTGTCTGGTATAAAGCTTTTGGAGACCTATTGCTGTTTAAAACCTTTAGAAGCTTTCCCTTTAAAATGCCATAACTCTTGAAAAAACAAATCCAGCAAACCATCAGGGCCGATGGTTCGAGGTCTATTCATCTGGTTACAGGCCGATGGAACGTCATCCTCGGTGTAGGTAGGTACGAAAGCCTCATTCATTTCATCGCTATCACTTGGCTCGAGTCGTCTTAGAAAGTGAGAAACTCAACCGTTGCTATCTTACCCATAACACGAAACAAGACTATTTGAAATAATCAGATATAAGCTATGCTGTACCATTTTTCTTTTGGGTCTTTGCATGTCTACCTTATTGCTGCTAGTTATTTCATCACTATCACTTCCCATTTGCATCATGATTCTGAAAGGAGTGGGGGTGGAGAGGTTATTTGTCTCTGTGAATTTCTGTTGTTTTTGCCCATTTTTTACTGTTCTTTGCGTGCAATGCAGCCAGATGTTTCAAACTTTTATTGCTGTTTTTGTTTTCTTCAAATTTCATAGAACAGAGTGATGGATGTGCTTGAACAGTTCATCGATCGATTATAG

mRNA sequence

ATGAAAATAAACAATAAAGTTAGTGATAGAGATTGCGATTTCGACCTGTTTTTGAAGCGTCTTGCTGCTGCAATGGCTTCCATCGGAGAGAAGAGTGAAAGGATCCAAAGTAGAGGAAAACGAGATGCAAAACAAGAGAATTCCGGGGAAGAAAAGAGACAACTAAATCACATAATGTCCGACGTAAAGCTTAGGAAAATCCATGGAAATGCGGTGGAAGAACGAGAAGAACGGTTGGATTTTAGGAATTCGCCTCGTGATCTCTGGCTGAACGAAACTCCAAACAGAGTGATGGATGTGCTTGAACAGTTCATCGATCGATTATAG

Coding sequence (CDS)

ATGAAAATAAACAATAAAGTTAGTGATAGAGATTGCGATTTCGACCTGTTTTTGAAGCGTCTTGCTGCTGCAATGGCTTCCATCGGAGAGAAGAGTGAAAGGATCCAAAGTAGAGGAAAACGAGATGCAAAACAAGAGAATTCCGGGGAAGAAAAGAGACAACTAAATCACATAATGTCCGACGTAAAGCTTAGGAAAATCCATGGAAATGCGGTGGAAGAACGAGAAGAACGGTTGGATTTTAGGAATTCGCCTCGTGATCTCTGGCTGAACGAAACTCCAAACAGAGTGATGGATGTGCTTGAACAGTTCATCGATCGATTATAG

Protein sequence

MKINNKVSDRDCDFDLFLKRLAAAMASIGEKSERIQSRGKRDAKQENSGEEKRQLNHIMSDVKLRKIHGNAVEEREERLDFRNSPRDLWLNETPNRVMDVLEQFIDRL
Homology
[Close]
BLAST of Carg10148 vs. NCBI nr
Match: KAG7013426.1 (hypothetical protein SDJN02_23592, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 212.6 bits (540), Expect = 1.7e-51
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MKINNKVSDRDCDFDLFLKRLAAAMASIGEKSERIQSRGKRDAKQENSGEEKRQLNHIMS 60
           MKINNKVSDRDCDFDLFLKRLAAAMASIGEKSERIQSRGKRDAKQENSGEEKRQLNHIMS
Sbjct: 1   MKINNKVSDRDCDFDLFLKRLAAAMASIGEKSERIQSRGKRDAKQENSGEEKRQLNHIMS 60

Query: 61  DVKLRKIHGNAVEEREERLDFRNSPRDLWLNETPNRVMDVLEQFIDRL 109
           DVKLRKIHGNAVEEREERLDFRNSPRDLWLNETPNRVMDVLEQFIDRL
Sbjct: 61  DVKLRKIHGNAVEEREERLDFRNSPRDLWLNETPNRVMDVLEQFIDRL 108

[Close]
BLAST of Carg10148 vs. NCBI nr
Match: KAG6574853.1 (High mobility group B protein 15, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.9 bits (263), Expect = 2.2e-19
Identity = 58/66 (87.88%), Postives = 59/66 (89.39%), Query Frame = 0 

Query: 13  DFDLFLKRLAAAMASIGEKSERIQSRGKRDAKQENSGEEKRQLNHIMSDVKLRKIHGNAV 72
           D D     LAAAMASIGEKSERIQ+RGKRDAKQENSGEEKRQ NHIMSDVKLRKIHGNAV
Sbjct: 55  DGDYHRLLLAAAMASIGEKSERIQNRGKRDAKQENSGEEKRQRNHIMSDVKLRKIHGNAV 114

Query: 73  EEREER 79
           EEREER
Sbjct: 115 EEREER 120

The following BLAST results are available for this feature:
BLAST of Carg10148 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7013426.11.7e-51100.00hypothetical protein SDJN02_23592, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6574853.12.2e-1987.88High mobility group B protein 15, partial [Cucurbita argyrosperma subsp. sororia... [more]
BLAST of Carg10148 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10148 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10148 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10148-RACarg10148-RAmRNA