Carg10110 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg10110
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	TLD domain-containing protein 2-like isoform X2
Location	Carg_Chr17: 758877 .. 760109 (+)
RNA-Seq Expression	Carg10110
Synteny	Carg10110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGCGTTGAGGGAGAAATTCTACGGGAGGTTCTCCAGCCTCTTCTCCTATTCCACTAGCTCGGATCCTTCTAAATCACTGCCGCCTGATCCTCATACTCAGGTTCTTCGTTTTTGTCTTCTGTTTGATAGCTTGTTTGTGCGATTGTTTGTGATTGAATGATATGCTGGAAGGTTTTGTATGCTTTATAGAGATTGTGTGATTTGGCATTCGGCGTTTTGTGAGTTATTTGCAAATGGGATTAATGATTTCATCTAGGGCTTTGAAGAAGGGCTGCCACAGACCACAATGTCTGGGTACTCTTTAGTATTAATGTTCTCATGGGTCCAAGTATTCATAGGAAACGAGATATATGACTCAGGAGGAATTATGTTTGAGGTATTTAAGGCCTTGCGTTTCTCGAAGTGTTCTTGATGTTCGATTCACATTTTGTAGTTTTTTGGGGGGTTTTTTTTTTTTTTCCCATACAAAATTGCAATGGCTTGGGTGCTTGAAATGGTAATAGGCCTGAGGCTGAGATAAACAGAATCGAAGGTTTTGTGAATTGTAACTTACAAGTTGCTAGTATATGGCTTAGGCTTAGTTACTTCAGTTCCTCCATCCCCTAATATTGAGCTCCATGACTGCTTGATAGGCGAAACTAGTATATGATTAGAGGTTTTGATCTTCATGCCTTATCTCCTTTTCTTCGACAGATTCATTTGTGAATTTGATTCCATGTTGGCTTGTGACATGGTTTTAATTATGTAGGTTAGGCCGTCGAAAGGAAGAAAATCACTGTCTTCATATTTGTCCTTAATAATCCCTTCCAAACATGGATCTAAACCCACTGATTCTCGTCAAGATACCGATGCAGTTCAAACTCCCTCAGGTCGATATTGTGATGCAAACAACGATTTCCAGGATGAAGGGTCTGGTGCTTTTTTAGAATGTAGTATACTATGCAAGACGGAAGAAATACCTCATAATCAGGGAGAAAATAAGGTTTGTGGTTCAGCACATGAGAAGGTAAAACTGAATGAACTTGGAGTTGATGATGACCCGCCATCTGGAAACAGCAATTCTAGTTCAGATGTATTTGATGAGGCTATGGAGCGCCCTACCCCAAGAAACCCCTTACCAGACTTCATGGATGAGTCGGCCTTTATCACTGCAGACTTGTATGATTTCCTGGGATGTTGTCTACCCAACATTGTGAAAGGGTGCCAATGGGTCTTACTGTACAGGTAG

mRNA sequence

ATGCATGCGTTGAGGGAGAAATTCTACGGGAGGTTCTCCAGCCTCTTCTCCTATTCCACTAGCTCGGATCCTTCTAAATCACTGCCGCCTGATCCTCATACTCAGGTTAGGCCGTCGAAAGGAAGAAAATCACTGTCTTCATATTTGTCCTTAATAATCCCTTCCAAACATGGATCTAAACCCACTGATTCTCGTCAAGATACCGATGCAGTTCAAACTCCCTCAGGTCGATATTGTGATGCAAACAACGATTTCCAGGATGAAGGGTCTGGTGCTTTTTTAGAATGTAGTATACTATGCAAGACGGAAGAAATACCTCATAATCAGGGAGAAAATAAGGTTTGTGGTTCAGCACATGAGAAGGTAAAACTGAATGAACTTGGAGTTGATGATGACCCGCCATCTGGAAACAGCAATTCTAGTTCAGATGTATTTGATGAGGCTATGGAGCGCCCTACCCCAAGAAACCCCTTACCAGACTTCATGGATGAGTCGGCCTTTATCACTGCAGACTTGTATGATTTCCTGGGATGTTGTCTACCCAACATTGTGAAAGGGTGCCAATGGGTCTTACTGTACAGGTAG

Coding sequence (CDS)

ATGCATGCGTTGAGGGAGAAATTCTACGGGAGGTTCTCCAGCCTCTTCTCCTATTCCACTAGCTCGGATCCTTCTAAATCACTGCCGCCTGATCCTCATACTCAGGTTAGGCCGTCGAAAGGAAGAAAATCACTGTCTTCATATTTGTCCTTAATAATCCCTTCCAAACATGGATCTAAACCCACTGATTCTCGTCAAGATACCGATGCAGTTCAAACTCCCTCAGGTCGATATTGTGATGCAAACAACGATTTCCAGGATGAAGGGTCTGGTGCTTTTTTAGAATGTAGTATACTATGCAAGACGGAAGAAATACCTCATAATCAGGGAGAAAATAAGGTTTGTGGTTCAGCACATGAGAAGGTAAAACTGAATGAACTTGGAGTTGATGATGACCCGCCATCTGGAAACAGCAATTCTAGTTCAGATGTATTTGATGAGGCTATGGAGCGCCCTACCCCAAGAAACCCCTTACCAGACTTCATGGATGAGTCGGCCTTTATCACTGCAGACTTGTATGATTTCCTGGGATGTTGTCTACCCAACATTGTGAAAGGGTGCCAATGGGTCTTACTGTACAGGTAG

Protein sequence

MHALREKFYGRFSSLFSYSTSSDPSKSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHGSKPTDSRQDTDAVQTPSGRYCDANNDFQDEGSGAFLECSILCKTEEIPHNQGENKVCGSAHEKVKLNELGVDDDPPSGNSNSSSDVFDEAMERPTPRNPLPDFMDESAFITADLYDFLGCCLPNIVKGCQWVLLYR

Homology

[Close]

BLAST of Carg10110 vs. NCBI nr
Match: KAG7013464.1 (hypothetical protein SDJN02_23630, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 402.5 bits (1033), Expect = 2.0e-108
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MHALREKFYGRFSSLFSYSTSSDPSKSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHGSK 60
           MHALREKFYGRFSSLFSYSTSSDPSKSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHGSK
Sbjct: 1   MHALREKFYGRFSSLFSYSTSSDPSKSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHGSK 60

Query: 61  PTDSRQDTDAVQTPSGRYCDANNDFQDEGSGAFLECSILCKTEEIPHNQGENKVCGSAHE 120
           PTDSRQDTDAVQTPSGRYCDANNDFQDEGSGAFLECSILCKTEEIPHNQGENKVCGSAHE
Sbjct: 61  PTDSRQDTDAVQTPSGRYCDANNDFQDEGSGAFLECSILCKTEEIPHNQGENKVCGSAHE 120

Query: 121 KVKLNELGVDDDPPSGNSNSSSDVFDEAMERPTPRNPLPDFMDESAFITADLYDFLGCCL 180
           KVKLNELGVDDDPPSGNSNSSSDVFDEAMERPTPRNPLPDFMDESAFITADLYDFLGCCL
Sbjct: 121 KVKLNELGVDDDPPSGNSNSSSDVFDEAMERPTPRNPLPDFMDESAFITADLYDFLGCCL 180

Query: 181 PNIVKGCQWVLLYR 195
           PNIVKGCQWVLLYR
Sbjct: 181 PNIVKGCQWVLLYR 194

[Close]

BLAST of Carg10110 vs. NCBI nr
Match: KAG6574892.1 (Oxidation resistance protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 396.0 bits (1016), Expect = 1.9e-106
Identity = 191/193 (98.96%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MHALREKFYGRFSSLFSYSTSSDPSKSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHGSK 60
           MHALREKFYGRFSSLFSYSTSSDPSKSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHGSK
Sbjct: 1   MHALREKFYGRFSSLFSYSTSSDPSKSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHGSK 60

Query: 61  PTDSRQDTDAVQTPSGRYCDANNDFQDEGSGAFLECSILCKTEEIPHNQGENKVCGSAHE 120
           PTDSRQDTDAVQTPSGRYCDANNDFQ+EGS AFLECSILCKTEEIPHNQGENKVCGSAHE
Sbjct: 61  PTDSRQDTDAVQTPSGRYCDANNDFQEEGSDAFLECSILCKTEEIPHNQGENKVCGSAHE 120

Query: 121 KVKLNELGVDDDPPSGNSNSSSDVFDEAMERPTPRNPLPDFMDESAFITADLYDFLGCCL 180
           KVKLNELGVDDDPPSGNSNSSSDVFDEAMERPTPRNPLPDFMDESAFITADLYDFLGCCL
Sbjct: 121 KVKLNELGVDDDPPSGNSNSSSDVFDEAMERPTPRNPLPDFMDESAFITADLYDFLGCCL 180

Query: 181 PNIVKGCQWVLLY 194
           PNIVKGCQWVLLY
Sbjct: 181 PNIVKGCQWVLLY 193

[Close]

BLAST of Carg10110 vs. NCBI nr
Match: XP_022959247.1 (TLD domain-containing protein 2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 394.0 bits (1011), Expect = 7.2e-106
Identity = 190/193 (98.45%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MHALREKFYGRFSSLFSYSTSSDPSKSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHGSK 60
           MHALREKFYGRFSSLFSYSTSSDPSKSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHGSK
Sbjct: 1   MHALREKFYGRFSSLFSYSTSSDPSKSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHGSK 60

Query: 61  PTDSRQDTDAVQTPSGRYCDANNDFQDEGSGAFLECSILCKTEEIPHNQGENKVCGSAHE 120
           PTDSRQDTDAVQTPSGRYCDANN+FQ+EGS AFLECSILCKTEEIPHNQGENKVCGSAHE
Sbjct: 61  PTDSRQDTDAVQTPSGRYCDANNNFQEEGSDAFLECSILCKTEEIPHNQGENKVCGSAHE 120

Query: 121 KVKLNELGVDDDPPSGNSNSSSDVFDEAMERPTPRNPLPDFMDESAFITADLYDFLGCCL 180
           KVKLNELGVDDDPPSGNSNSSSDVFDEAMERPTPRNPLPDFMDESAFITADLYDFLGCCL
Sbjct: 121 KVKLNELGVDDDPPSGNSNSSSDVFDEAMERPTPRNPLPDFMDESAFITADLYDFLGCCL 180

Query: 181 PNIVKGCQWVLLY 194
           PNIVKGCQWVLLY
Sbjct: 181 PNIVKGCQWVLLY 193

[Close]

BLAST of Carg10110 vs. NCBI nr
Match: XP_023547373.1 (TLD domain-containing protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 389.0 bits (998), Expect = 2.3e-104
Identity = 187/193 (96.89%), Postives = 191/193 (98.96%), Query Frame = 0


Query: 1   MHALREKFYGRFSSLFSYSTSSDPSKSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHGSK 60
           MHALREKFYGRFSSLFSYSTSSDPSKSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHGSK
Sbjct: 1   MHALREKFYGRFSSLFSYSTSSDPSKSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHGSK 60

Query: 61  PTDSRQDTDAVQTPSGRYCDANNDFQDEGSGAFLECSILCKTEEIPHNQGENKVCGSAHE 120
           PTDSRQDTDAVQTPSGRYCDANNDFQ+EGS AFLECSILCKTEEIPHNQGENKVCGSAHE
Sbjct: 61  PTDSRQDTDAVQTPSGRYCDANNDFQEEGSDAFLECSILCKTEEIPHNQGENKVCGSAHE 120

Query: 121 KVKLNELGVDDDPPSGNSNSSSDVFDEAMERPTPRNPLPDFMDESAFITADLYDFLGCCL 180
           KVKLNE GVD+DPPSGNSNSSSDV++EAMERPTPRNPLPDFMDESAFITADLYDFLGCCL
Sbjct: 121 KVKLNEPGVDEDPPSGNSNSSSDVYEEAMERPTPRNPLPDFMDESAFITADLYDFLGCCL 180

Query: 181 PNIVKGCQWVLLY 194
           PNIVKGCQWVLLY
Sbjct: 181 PNIVKGCQWVLLY 193

[Close]

BLAST of Carg10110 vs. NCBI nr
Match: XP_023006080.1 (TLD domain-containing protein 2-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 376.7 bits (966), Expect = 1.2e-100
Identity = 183/193 (94.82%), Postives = 186/193 (96.37%), Query Frame = 0


Query: 1   MHALREKFYGRFSSLFSYSTSSDPSKSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHGSK 60
           MHALREKFYGRFSSLFSYSTSSDP KSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHGSK
Sbjct: 1   MHALREKFYGRFSSLFSYSTSSDPPKSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHGSK 60

Query: 61  PTDSRQDTDAVQTPSGRYCDANNDFQDEGSGAFLECSILCKTEEIPHNQGENKVCGSAHE 120
           PTDSRQDT+AVQTPS RY DANNDFQ+EGS AFLECSILCK EEIPHNQGE KVCGSAHE
Sbjct: 61  PTDSRQDTNAVQTPSVRYSDANNDFQEEGSDAFLECSILCKAEEIPHNQGETKVCGSAHE 120

Query: 121 KVKLNELGVDDDPPSGNSNSSSDVFDEAMERPTPRNPLPDFMDESAFITADLYDFLGCCL 180
           KVKLNELGVDDDPPSGNSNSSSDVF+EAMERPTPRNPLPD MDESAFITADLYDFLGCCL
Sbjct: 121 KVKLNELGVDDDPPSGNSNSSSDVFEEAMERPTPRNPLPDIMDESAFITADLYDFLGCCL 180

Query: 181 PNIVKGCQWVLLY 194
           PNIVKGCQWVLLY
Sbjct: 181 PNIVKGCQWVLLY 193

[Close]

BLAST of Carg10110 vs. ExPASy TrEMBL
Match: A0A6J1H401 (TLD domain-containing protein 2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111460285 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 3.5e-106
Identity = 190/193 (98.45%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MHALREKFYGRFSSLFSYSTSSDPSKSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHGSK 60
           MHALREKFYGRFSSLFSYSTSSDPSKSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHGSK
Sbjct: 1   MHALREKFYGRFSSLFSYSTSSDPSKSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHGSK 60

Query: 61  PTDSRQDTDAVQTPSGRYCDANNDFQDEGSGAFLECSILCKTEEIPHNQGENKVCGSAHE 120
           PTDSRQDTDAVQTPSGRYCDANN+FQ+EGS AFLECSILCKTEEIPHNQGENKVCGSAHE
Sbjct: 61  PTDSRQDTDAVQTPSGRYCDANNNFQEEGSDAFLECSILCKTEEIPHNQGENKVCGSAHE 120

Query: 121 KVKLNELGVDDDPPSGNSNSSSDVFDEAMERPTPRNPLPDFMDESAFITADLYDFLGCCL 180
           KVKLNELGVDDDPPSGNSNSSSDVFDEAMERPTPRNPLPDFMDESAFITADLYDFLGCCL
Sbjct: 121 KVKLNELGVDDDPPSGNSNSSSDVFDEAMERPTPRNPLPDFMDESAFITADLYDFLGCCL 180

Query: 181 PNIVKGCQWVLLY 194
           PNIVKGCQWVLLY
Sbjct: 181 PNIVKGCQWVLLY 193

[Close]

BLAST of Carg10110 vs. ExPASy TrEMBL
Match: A0A6J1KZ69 (TLD domain-containing protein 2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498930 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 5.8e-101
Identity = 183/193 (94.82%), Postives = 186/193 (96.37%), Query Frame = 0


Query: 1   MHALREKFYGRFSSLFSYSTSSDPSKSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHGSK 60
           MHALREKFYGRFSSLFSYSTSSDP KSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHGSK
Sbjct: 1   MHALREKFYGRFSSLFSYSTSSDPPKSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHGSK 60

Query: 61  PTDSRQDTDAVQTPSGRYCDANNDFQDEGSGAFLECSILCKTEEIPHNQGENKVCGSAHE 120
           PTDSRQDT+AVQTPS RY DANNDFQ+EGS AFLECSILCK EEIPHNQGE KVCGSAHE
Sbjct: 61  PTDSRQDTNAVQTPSVRYSDANNDFQEEGSDAFLECSILCKAEEIPHNQGETKVCGSAHE 120

Query: 121 KVKLNELGVDDDPPSGNSNSSSDVFDEAMERPTPRNPLPDFMDESAFITADLYDFLGCCL 180
           KVKLNELGVDDDPPSGNSNSSSDVF+EAMERPTPRNPLPD MDESAFITADLYDFLGCCL
Sbjct: 121 KVKLNELGVDDDPPSGNSNSSSDVFEEAMERPTPRNPLPDIMDESAFITADLYDFLGCCL 180

Query: 181 PNIVKGCQWVLLY 194
           PNIVKGCQWVLLY
Sbjct: 181 PNIVKGCQWVLLY 193

[Close]

BLAST of Carg10110 vs. ExPASy TrEMBL
Match: A0A6J1H4B4 (TLD domain-containing protein 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111460285 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 2.9e-100
Identity = 190/233 (81.55%), Postives = 192/233 (82.40%), Query Frame = 0


Query: 1   MHALREKFYGRFSSLFSYSTSSDPSKSLPPDPHTQ------------------------- 60
           MHALREKFYGRFSSLFSYSTSSDPSKSLPPDPHTQ                         
Sbjct: 1   MHALREKFYGRFSSLFSYSTSSDPSKSLPPDPHTQGFEEGLPQTTMSGYSLVLMFSWVQL 60

Query: 61  ---------------VRPSKGRKSLSSYLSLIIPSKHGSKPTDSRQDTDAVQTPSGRYCD 120
                          VRPSKGRKSLSSYLSLIIPSKHGSKPTDSRQDTDAVQTPSGRYCD
Sbjct: 61  FIGNEIYDSGGIMFEVRPSKGRKSLSSYLSLIIPSKHGSKPTDSRQDTDAVQTPSGRYCD 120

Query: 121 ANNDFQDEGSGAFLECSILCKTEEIPHNQGENKVCGSAHEKVKLNELGVDDDPPSGNSNS 180
           ANN+FQ+EGS AFLECSILCKTEEIPHNQGENKVCGSAHEKVKLNELGVDDDPPSGNSNS
Sbjct: 121 ANNNFQEEGSDAFLECSILCKTEEIPHNQGENKVCGSAHEKVKLNELGVDDDPPSGNSNS 180

Query: 181 SSDVFDEAMERPTPRNPLPDFMDESAFITADLYDFLGCCLPNIVKGCQWVLLY 194
           SSDVFDEAMERPTPRNPLPDFMDESAFITADLYDFLGCCLPNIVKGCQWVLLY
Sbjct: 181 SSDVFDEAMERPTPRNPLPDFMDESAFITADLYDFLGCCLPNIVKGCQWVLLY 233

[Close]

BLAST of Carg10110 vs. ExPASy TrEMBL
Match: A0A6J1L3X9 (TLD domain-containing protein 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498930 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 4.8e-95
Identity = 183/233 (78.54%), Postives = 186/233 (79.83%), Query Frame = 0


Query: 1   MHALREKFYGRFSSLFSYSTSSDPSKSLPPDPHTQ------------------------- 60
           MHALREKFYGRFSSLFSYSTSSDP KSLPPDPHTQ                         
Sbjct: 1   MHALREKFYGRFSSLFSYSTSSDPPKSLPPDPHTQGFEEGLPQTTMSVYSLVLMSSWVQV 60

Query: 61  ---------------VRPSKGRKSLSSYLSLIIPSKHGSKPTDSRQDTDAVQTPSGRYCD 120
                          VRPSKGRKSLSSYLSLIIPSKHGSKPTDSRQDT+AVQTPS RY D
Sbjct: 61  FIGNEIYDSGGIMFEVRPSKGRKSLSSYLSLIIPSKHGSKPTDSRQDTNAVQTPSVRYSD 120

Query: 121 ANNDFQDEGSGAFLECSILCKTEEIPHNQGENKVCGSAHEKVKLNELGVDDDPPSGNSNS 180
           ANNDFQ+EGS AFLECSILCK EEIPHNQGE KVCGSAHEKVKLNELGVDDDPPSGNSNS
Sbjct: 121 ANNDFQEEGSDAFLECSILCKAEEIPHNQGETKVCGSAHEKVKLNELGVDDDPPSGNSNS 180

Query: 181 SSDVFDEAMERPTPRNPLPDFMDESAFITADLYDFLGCCLPNIVKGCQWVLLY 194
           SSDVF+EAMERPTPRNPLPD MDESAFITADLYDFLGCCLPNIVKGCQWVLLY
Sbjct: 181 SSDVFEEAMERPTPRNPLPDIMDESAFITADLYDFLGCCLPNIVKGCQWVLLY 233

[Close]

BLAST of Carg10110 vs. ExPASy TrEMBL
Match: A0A5A7SNS4 (Oxidation resistance protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00070 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.5e-72
Identity = 145/194 (74.74%), Postives = 160/194 (82.47%), Query Frame = 0


Query: 1   MHALREKFYGRFSSLFSYSTSSDPSKSLPPDPHTQVRP-SKGRKSLSSYLSLIIPSKHGS 60
           MHAL+EK   RFSSLFS+STSS+ SKS  PDPHTQ RP SKGRKSLSSYLSL+IPS HGS
Sbjct: 1   MHALKEKVSERFSSLFSHSTSSESSKSSAPDPHTQARPKSKGRKSLSSYLSLLIPSIHGS 60

Query: 61  KPTDSRQDTDAVQTPSGRYCDANNDFQDEGSGAFLECSILCKTEEIPHNQGENKVCGSAH 120
           KP+ SRQDT+AVQ+PS RYCDANNDFQ EGS   L CSI CK EEIP NQ ENK C SA+
Sbjct: 61  KPSASRQDTNAVQSPSVRYCDANNDFQKEGSDTCLGCSIPCKAEEIPSNQSENKDCSSAY 120

Query: 121 EKVKLNELGVDDDPPSGNSNSSSDVFDEAMERPTPRNPLPDFMDESAFITADLYDFLGCC 180
           E+ KLN+LGVD D  S  S  SSD F+EAMERPTPRN L D MDESAFIT+DL++FLGCC
Sbjct: 121 EEGKLNKLGVDYDSASRKSTCSSDGFEEAMERPTPRNRLSDLMDESAFITSDLHEFLGCC 180

Query: 181 LPNIVKGCQWVLLY 194
           LPNIVKGC+WVLLY
Sbjct: 181 LPNIVKGCKWVLLY 194

[Close]

BLAST of Carg10110 vs. TAIR 10
Match: AT2G05590.1 (TLD-domain containing nucleolar protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-10
Identity = 58/196 (29.59%), Postives = 89/196 (45.41%), Query Frame = 0


Query: 1   MHALREKFYGRFSSLF--SYSTSSDPSKSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHG 60
           MHAL++K   + S+LF  S S S+ P  S    P  ++  S G KSLSSY S ++P + G
Sbjct: 1   MHALKDKVSQKLSNLFADSPSQSASPRYSNSDSPKARLNSSVG-KSLSSYFSFVVP-QSG 60

Query: 61  SKPTDSRQDTDAVQTPSGRYCDANNDFQDEG-SGAFLECSILCKTEEIPHNQGENKVCGS 120
           ++          ++T S    +       +  +G F+               GE+K C  
Sbjct: 61  NEEDSELCPPLPIRTESYECIENCKSANGQAKAGTFISI-------------GEDKDC-E 120

Query: 121 AHEKVKLNELGVDDDPPSGNSNSSSDVFDEAMERPTPRNPLPDFMDESAFITADLYDFLG 180
                K+ E             S +D FD   +       + +  + S FITA+L++FL 
Sbjct: 121 LRVSAKVEE-------------SGNDYFDGVKK-------MRELTESSVFITANLFEFLH 160

Query: 181 CCLPNIVKGCQWVLLY 194
             LPNIV+GC+W+LLY
Sbjct: 181 ASLPNIVRGCKWILLY 160

[Close]

BLAST of Carg10110 vs. TAIR 10
Match: AT2G05590.2 (TLD-domain containing nucleolar protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-10
Identity = 58/196 (29.59%), Postives = 89/196 (45.41%), Query Frame = 0


Query: 1   MHALREKFYGRFSSLF--SYSTSSDPSKSLPPDPHTQVRPSKGRKSLSSYLSLIIPSKHG 60
           MHAL++K   + S+LF  S S S+ P  S    P  ++  S G KSLSSY S ++P + G
Sbjct: 1   MHALKDKVSQKLSNLFADSPSQSASPRYSNSDSPKARLNSSVG-KSLSSYFSFVVP-QSG 60

Query: 61  SKPTDSRQDTDAVQTPSGRYCDANNDFQDEG-SGAFLECSILCKTEEIPHNQGENKVCGS 120
           ++          ++T S    +       +  +G F+               GE+K C  
Sbjct: 61  NEEDSELCPPLPIRTESYECIENCKSANGQAKAGTFISI-------------GEDKDC-E 120

Query: 121 AHEKVKLNELGVDDDPPSGNSNSSSDVFDEAMERPTPRNPLPDFMDESAFITADLYDFLG 180
                K+ E             S +D FD   +       + +  + S FITA+L++FL 
Sbjct: 121 LRVSAKVEE-------------SGNDYFDGVKK-------MRELTESSVFITANLFEFLH 160

Query: 181 CCLPNIVKGCQWVLLY 194
             LPNIV+GC+W+LLY
Sbjct: 181 ASLPNIVRGCKWILLY 160

The following BLAST results are available for this feature:

BLAST of Carg10110 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013464.1	2.0e-108	100.00	hypothetical protein SDJN02_23630, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6574892.1	1.9e-106	98.96	Oxidation resistance protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022959247.1	7.2e-106	98.45	TLD domain-containing protein 2-like isoform X2 [Cucurbita moschata]	[more]
XP_023547373.1	2.3e-104	96.89	TLD domain-containing protein 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_023006080.1	1.2e-100	94.82	TLD domain-containing protein 2-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg10110 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg10110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H401	3.5e-106	98.45	TLD domain-containing protein 2-like isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KZ69	5.8e-101	94.82	TLD domain-containing protein 2-like isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1H4B4	2.9e-100	81.55	TLD domain-containing protein 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1L3X9	4.8e-95	78.54	TLD domain-containing protein 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5A7SNS4	2.5e-72	74.74	Oxidation resistance protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of Carg10110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G05590.1	2.1e-10	29.59	TLD-domain containing nucleolar protein	[more]
AT2G05590.2	2.1e-10	29.59	TLD-domain containing nucleolar protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..75
None	No IPR available	PANTHER	PTHR23354:SF74	TLD-DOMAIN CONTAINING NUCLEOLAR PROTEIN	coord: 1..193
None	No IPR available	PANTHER	PTHR23354	NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED	coord: 1..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10110-RA	Carg10110-RA	mRNA