Carg10051 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10051
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr17: 1109618 .. 1110918 (-)
RNA-Seq ExpressionCarg10051
SyntenyCarg10051
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGTTTCACCTGTTGATGGCTCCACGAAGAATTCAGCCCTAAATTCAAATTTCTTGACCATATCAGCCGCTTTCTATCCATAATCCTTAAAAAAGGTACGAAATTTATGTTCTTTGTCTCTATTCCTCATCTGGGTTTGTTGAATTTTGTTCTGGGTCGCCCTCTTTTTGTGAATTTCTTAAGGTTTTGATGAATTTATGGGGATTTCTCGAGGATTTTGATGATTTTAAACAAGAAAAACAAGCAGATCTCTGATTTGTGAGGAATTGGAGTTGGTTTTGTTGGGGGATTTTCGAGAGAGATTCAGAGTGATTAGGGCATTACATTGAGGATGAGAGAGAAAAAGAGGATAAATTTGTAAACATGTGATCTATGTTTCTTCGTACTTGGTCGTGTTTTCTGGATTAGCAGTGTGTCTTATCTAACACCAAACGATGCAGAGAAGTGAATATGATAATGATATTTCAGAACTAAAATTTCGTCATTTCTAGACATTTTCATTTTTCTTGTCATTCCATGGTTAATTTTGTTTCTTATGCTTTTAGTGTCGCAGGCAACATTTTTTTTGGGTCGATTGCAAGGCTAGATCTTCGGTTTGTGTGTCGGGTGGGACGATAAGGTAATTGTCTCTTTGATTCGTCCGAGTTATAAAAAGTTTGAATGTAAAACTTTTCTTTTCATTAAAAGGTTTAAGATCTCTCCGTTTATGTGTTCATATTTTATAATGAATGACTAAAAAAGAATAGTCGAGTGGTTTATGATCGATGGGTTCTTCTCATGGCTTATAGTGAGTTCATTTCTTGTAAAAATTTGTTTTTTTCATAAGCCCATTCCATCCAAGAACGTTTATATCTTATCTTCGTGTTTATATCTTATCTTCGTGTTTATATCTTATCTTCGTGTTTATATCTTATCTTCGTGTTTATATCTTATCTTCGTTAGAATTCGATAAGATTAGAGTTTAGAGTTTGAAAAATTTGACCTCTAATTTAGAATTTTTAAGGTTGTGTATTTAATCATGGAACTTTGTTTACAATAAAATCACTAAATTTTGGTTTTTTTTTTTTGATAAATGGGAGGATTCTTCAAAGTGACGGGGTTTAGTTTAGTTTTCGAATCTTAGATGTTTAGTTATTATAAGATTCTGAACTCTAGAAACTTTTAACTTTATGTGTCTAAGCAATTTACTTTTCACAGACTCACCAAACGTAATTTAACCAAAACTTTACAAGAACCTAAACGAACTTACAATATAGAAGGTGCAAATCAAACAACCATGATGAAGGCAATTCATTAA

mRNA sequence

ATGGCAGTTTCACCTTGTCGCAGGCAACATTTTTTTTGGGTCGATTGCAAGGCTAGATCTTCGGTTTGTGTGTCGGGTGGGACGATAAGACTCACCAAACGTAATTTAACCAAAACTTTACAAGAACCTAAACGAACTTACAATATAGAAGGTGCAAATCAAACAACCATGATGAAGGCAATTCATTAA

Coding sequence (CDS)

ATGGCAGTTTCACCTTGTCGCAGGCAACATTTTTTTTGGGTCGATTGCAAGGCTAGATCTTCGGTTTGTGTGTCGGGTGGGACGATAAGACTCACCAAACGTAATTTAACCAAAACTTTACAAGAACCTAAACGAACTTACAATATAGAAGGTGCAAATCAAACAACCATGATGAAGGCAATTCATTAA

Protein sequence

MAVSPCRRQHFFWVDCKARSSVCVSGGTIRLTKRNLTKTLQEPKRTYNIEGANQTTMMKAIH
Homology
[Close]
BLAST of Carg10051 vs. NCBI nr
Match: KAG7013522.1 (hypothetical protein SDJN02_23688, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.5 bits (332), Expect = 1.3e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MAVSPCRRQHFFWVDCKARSSVCVSGGTIRLTKRNLTKTLQEPKRTYNIEGANQTTMMKA 60
          MAVSPCRRQHFFWVDCKARSSVCVSGGTIRLTKRNLTKTLQEPKRTYNIEGANQTTMMKA
Sbjct: 1  MAVSPCRRQHFFWVDCKARSSVCVSGGTIRLTKRNLTKTLQEPKRTYNIEGANQTTMMKA 60

Query: 61 IH 63
          IH
Sbjct: 61 IH 62

The following BLAST results are available for this feature:
BLAST of Carg10051 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7013522.11.3e-27100.00hypothetical protein SDJN02_23688, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg10051 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10051 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10051 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10051-RACarg10051-RAmRNA