Carg10004 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10004
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr10: 2124793 .. 2125137 (+)
RNA-Seq ExpressionCarg10004
SyntenyCarg10004
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCAACGAAGCTTATTACAAGAACCAAGAAAATCTTGATTTTCCGGGAAAATGTTTCTGAAAGGAAAATTCCCTGTAGTCTGAATCTATGCGATTACACATTATACCTCGATTCTCGGATTCTCGGATCCTCGGATTCGATTTTCCCTGTTCCAATAGCCCTAATTTCTCTCTCACCATGTTGTCTGGCTTATCATGGCGATGATTCGAGTTCTTTCACCGGAGTACTCCGCCGGAATATCCTTCATCCATCGGAGCATCGGTGGGCGGATAAACACACCGGATCCTCTTCGGCCATGAAGATCAGTATCAAAAGAAGGTTTACAGATGGTTCCCAGTAG

mRNA sequence

ATGAACTCAACGAAGCTTATTACAAGAACCAAGAAAATCTTGATTTTCCGGGAAAATGTTTCTGAAAGGAAAATTCCCTGTAGTCTGAATCTATGCGATTACACATTATACCTCGATTCTCGGATTCTCGGATCCTCGGATTCGATTTTCCCTGTTCCAATAGCCCTAATTTCTCTCTCACCATGTTGTCTGGCTTATCATGGCGATGATTCGAGTTCTTTCACCGGAGTACTCCGCCGGAATATCCTTCATCCATCGGAGCATCGGTGGGCGGATAAACACACCGGATCCTCTTCGGCCATGAAGATCAGTATCAAAAGAAGGTTTACAGATGGTTCCCAGTAG

Coding sequence (CDS)

ATGAACTCAACGAAGCTTATTACAAGAACCAAGAAAATCTTGATTTTCCGGGAAAATGTTTCTGAAAGGAAAATTCCCTGTAGTCTGAATCTATGCGATTACACATTATACCTCGATTCTCGGATTCTCGGATCCTCGGATTCGATTTTCCCTGTTCCAATAGCCCTAATTTCTCTCTCACCATGTTGTCTGGCTTATCATGGCGATGATTCGAGTTCTTTCACCGGAGTACTCCGCCGGAATATCCTTCATCCATCGGAGCATCGGTGGGCGGATAAACACACCGGATCCTCTTCGGCCATGAAGATCAGTATCAAAAGAAGGTTTACAGATGGTTCCCAGTAG

Protein sequence

MNSTKLITRTKKILIFRENVSERKIPCSLNLCDYTLYLDSRILGSSDSIFPVPIALISLSPCCLAYHGDDSSSFTGVLRRNILHPSEHRWADKHTGSSSAMKISIKRRFTDGSQ
Homology
[Close]
BLAST of Carg10004 vs. NCBI nr
Match: KAG6589765.1 (hypothetical protein SDJN03_15188, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023436.1 hypothetical protein SDJN02_14461, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 232.3 bits (591), Expect = 2.1e-57
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MNSTKLITRTKKILIFRENVSERKIPCSLNLCDYTLYLDSRILGSSDSIFPVPIALISLS 60
           MNSTKLITRTKKILIFRENVSERKIPCSLNLCDYTLYLDSRILGSSDSIFPVPIALISLS
Sbjct: 1   MNSTKLITRTKKILIFRENVSERKIPCSLNLCDYTLYLDSRILGSSDSIFPVPIALISLS 60

Query: 61  PCCLAYHGDDSSSFTGVLRRNILHPSEHRWADKHTGSSSAMKISIKRRFTDGSQ 115
           PCCLAYHGDDSSSFTGVLRRNILHPSEHRWADKHTGSSSAMKISIKRRFTDGSQ
Sbjct: 61  PCCLAYHGDDSSSFTGVLRRNILHPSEHRWADKHTGSSSAMKISIKRRFTDGSQ 114

[Close]
BLAST of Carg10004 vs. NCBI nr
Match: KAG6587814.1 (hypothetical protein SDJN03_16379, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-04
Identity = 33/63 (52.38%), Postives = 40/63 (63.49%), Query Frame = 0 

Query: 49  IFPVP-IALISLS---PCCLAYHGDDSSSFTGVLRRNILHPSEHRWADKHTGSSSAMKIS 108
           +FP+  I L+ LS   P   A +  D  S TG+L RN+LHP EH+  DK TGSS A KIS
Sbjct: 7   LFPITLICLLLLSESFPVSSADYDQDWKSLTGILHRNVLHPLEHQRLDKDTGSSLAEKIS 66

The following BLAST results are available for this feature:
BLAST of Carg10004 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6589765.12.1e-57100.00hypothetical protein SDJN03_15188, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6587814.11.6e-0452.38hypothetical protein SDJN03_16379, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg10004 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10004 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10004 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10004-RACarg10004-RAmRNA