Carg10003 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg10003
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr10: 2125226 .. 2126085 (+)
RNA-Seq ExpressionCarg10003
SyntenyCarg10003
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCTCCCATTCCTGCAAAGAATCTCCATGGTAGGTCTTCAACATCACCAAAGTCTACTGCTAATGGCGTCCTTCTCCTCGCCTCTTAACTCAACTCCATGTTCGATCACACAGATAAAGGCACTTCCAATCTTCCCCAACGAAACAACCAATGGAGGCCTCTCTTTCTCAGAGGCACAACTTCCTCTGCCTCTCAATCAAAGAGGCGAAAACAGTATCAATGCGCTTCCCCTTGGTGATCTCGATGAACTCGCCAATAAAATCGCCCTCCGACGCTTGCCGAAGACGCGACTGGCAACGCGCTACCGGCATTCCCAAGGTTTTATTCCGTCCGAACATTTTCTTCGCGATTATCTCATCCTAACCTTCTGTTTATTCGAATTTGAGCTGAGAGGAGATGAGATGATTGGGAATGTTCCTTCATTTTTTGTTGTCTAATGGCTTCTGTTGCAGATGAAAGAAATGGAACAGAATTAGGGCAACTGAAGAAGGAAAGGAATTATAGCTTTTGTCTTCTAAAGTGAGTTACCTGAATTTTGCAAAACAAGATTTGCCGTCTTTTCTTCTTCAATTCATCGCACTTTATTCTTCTTCACCCTTTCCCTTCAAGAACCCTATCGCTTCGGAATCATATTAAACAAGTAATTAATTTTTTTGCTTCTTTTTCAGTTTTAACAAGGTCGACACTAAGTGGATTGTGGCATCATGGCCACTTATTTTGTCACGGATTTATGTCGTCTATAAAGGATTCTGCAAGATTGTGCAGCCCTTGAGAGTGAAGATTACGGTACAATGCAGCCCATGAGACTCGTCTATCAAAAGGGCGTTAGGTGAGAATTACGGTACAATGCAGTCCT

mRNA sequence

ATGGAGCTCCCATTCCTGCAAAGAATCTCCATGGTAGGTCTTCAACATCACCAAAGTCTACTGCTAATGGCGTCCTTCTCCTCGCCTCTTAACTCAACTCCATGTTCGATCACACAGATAAAGGCACTTCCAATCTTCCCCAACGAAACAACCAATGGAGGCCTCTCTTTCTCAGAGGCACAACTTCCTCTGCCTCTCAATCAAAGAGGCGAAAACAGTATCAATGCGCTTCCCCTTGGTGATCTCGATGAACTCGCCAATAAAATCGCCCTCCGACGCTTGCCGAAGACGCGACTGGCAACGCGCTACCGGCATTCCCAAGATGAAAGAAATGGAACAGAATTAGGGCAACTGAAGAAGGAAAGGAATTATAGCTTTTGTCTTCTAAATTTTAACAAGGTCGACACTAAGTGGATTGTGGCATCATGGCCACTTATTTTGTCACGGATTTATGTCGTCTATAAAGGATTCTGCAAGATTGTGCAGCCCTTGAGAGTGAAGATTACGGTACAATGCAGCCCATGAGACTCGTCTATCAAAAGGGCGTTAGGTGAGAATTACGGTACAATGCAGTCCT

Coding sequence (CDS)

ATGGAGCTCCCATTCCTGCAAAGAATCTCCATGGTAGGTCTTCAACATCACCAAAGTCTACTGCTAATGGCGTCCTTCTCCTCGCCTCTTAACTCAACTCCATGTTCGATCACACAGATAAAGGCACTTCCAATCTTCCCCAACGAAACAACCAATGGAGGCCTCTCTTTCTCAGAGGCACAACTTCCTCTGCCTCTCAATCAAAGAGGCGAAAACAGTATCAATGCGCTTCCCCTTGGTGATCTCGATGAACTCGCCAATAAAATCGCCCTCCGACGCTTGCCGAAGACGCGACTGGCAACGCGCTACCGGCATTCCCAAGATGAAAGAAATGGAACAGAATTAGGGCAACTGAAGAAGGAAAGGAATTATAGCTTTTGTCTTCTAAATTTTAACAAGGTCGACACTAAGTGGATTGTGGCATCATGGCCACTTATTTTGTCACGGATTTATGTCGTCTATAAAGGATTCTGCAAGATTGTGCAGCCCTTGAGAGTGAAGATTACGGTACAATGCAGCCCATGA

Protein sequence

MELPFLQRISMVGLQHHQSLLLMASFSSPLNSTPCSITQIKALPIFPNETTNGGLSFSEAQLPLPLNQRGENSINALPLGDLDELANKIALRRLPKTRLATRYRHSQDERNGTELGQLKKERNYSFCLLNFNKVDTKWIVASWPLILSRIYVVYKGFCKIVQPLRVKITVQCSP
Homology
[Close]
BLAST of Carg10003 vs. NCBI nr
Match: KAG7023437.1 (hypothetical protein SDJN02_14462, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 347.8 bits (891), Expect = 5.3e-92
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 

Query: 1   MELPFLQRISMVGLQHHQSLLLMASFSSPLNSTPCSITQIKALPIFPNETTNGGLSFSEA 60
           MELPFLQRISMVGLQHHQSLLLMASFSSPLNSTPCSITQIKALPIFPNETTNGGLSFSEA
Sbjct: 1   MELPFLQRISMVGLQHHQSLLLMASFSSPLNSTPCSITQIKALPIFPNETTNGGLSFSEA 60

Query: 61  QLPLPLNQRGENSINALPLGDLDELANKIALRRLPKTRLATRYRHSQDERNGTELGQLKK 120
           QLPLPLNQRGENSINALPLGDLDELANKIALRRLPKTRLATRYRHSQDERNGTELGQLKK
Sbjct: 61  QLPLPLNQRGENSINALPLGDLDELANKIALRRLPKTRLATRYRHSQDERNGTELGQLKK 120

Query: 121 ERNYSFCLLNFNKVDTKWIVASWPLILSRIYVVYKGFCKIVQPLRVKITVQCSP 175
           ERNYSFCLLNFNKVDTKWIVASWPLILSRIYVVYKGFCKIVQPLRVKITVQCSP
Sbjct: 121 ERNYSFCLLNFNKVDTKWIVASWPLILSRIYVVYKGFCKIVQPLRVKITVQCSP 174

[Close]
BLAST of Carg10003 vs. NCBI nr
Match: KAG6589766.1 (hypothetical protein SDJN03_15189, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 275.8 bits (704), Expect = 2.6e-70
Identity = 145/174 (83.33%), Postives = 145/174 (83.33%), Query Frame = 0 

Query: 1   MELPFLQRISMVGLQHHQSLLLMASFSSPLNSTPCSITQIKALPIFPNETTNGGLSFSEA 60
           MELPFLQRISM                            IKALPIFPNETTNGGLSFSEA
Sbjct: 1   MELPFLQRISM----------------------------IKALPIFPNETTNGGLSFSEA 60

Query: 61  QLPLPLNQRGENSINALPLGDLDELANKIALRRLPKTRLATRYRHSQDERNGTELGQLKK 120
           QLPLPLNQRGENSINALPL DLDELANKIALRRLPKTRLATRYRHSQDERNGTELGQLKK
Sbjct: 61  QLPLPLNQRGENSINALPLRDLDELANKIALRRLPKTRLATRYRHSQDERNGTELGQLKK 120

Query: 121 ERNYSFCLLNFNKVDTKWIVASWPLILSRIYVVYKGFCKIVQPLRVKITVQCSP 175
           ERNYSFCLLNFNKVDTKWIVASWPLILSRIYVVYKGFCKIVQPLRVKITVQCSP
Sbjct: 121 ERNYSFCLLNFNKVDTKWIVASWPLILSRIYVVYKGFCKIVQPLRVKITVQCSP 146

The following BLAST results are available for this feature:
BLAST of Carg10003 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7023437.15.3e-92100.00hypothetical protein SDJN02_14462, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6589766.12.6e-7083.33hypothetical protein SDJN03_15189, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg10003 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10003 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg10003 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10003-RACarg10003-RAmRNA