Carg09983 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09983
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Replication termination factor 2
Location	Carg_Chr10: 2231047 .. 2232204 (+)
RNA-Seq Expression	Carg09983
Synteny	Carg09983

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCCGTTGAAGCAACACTGTTTTCAGTTCTTCGTTTGCTCTCCCGAGCTACAAATTCAATCCGAAATCGTAAACCTAGCACGAAATTCGGTCCAAACCCTTGAGGACCTTAAGTCTTCTCTTGTTCCCGAAACGATTGTGTCATCTTTCTACTTCACCCTGAATGGGAAACCCCTTCTTGATTCCACCACGATTCCCTGTTCTCTGATTCCCCCTCTGTCCACGTTAATTTTGAGAGCCAGGGTCCTTGGGGGCGGTGGCGATGGCGGGGCAACAGGGGCCGAATCTCGTGATTGCTACCTTAATATGTACGCAGAAAAGAAGCCCGATAAGGTTGATCCTAACGAGCAGAGGCTGTCCAAGTGGTTGAATTGCGCTCTTTCTAATGAGCCTTTGAGGGAACCTTGTGTGATCGATTGGCTTGGGAATATTTTCAATAAGGAGTCGCTTGTGCAGGCTTTGCTAGAGAAGAAGCTGCCAAAGGGATTTGGGCATATCAAGGGTCTGAAGGATATGATCAAGATTAATCTTTCGGTGATTCCCGGTACAGAATTGAGTCGCAATGCGATTTCAGGATCGCGGTTCCAATGCCCGATTACTGGCCTCGAGTTCAATGGCAAGTATAAGTTTTTTGCTCTGAGAACTTGTGGACATGTGCTGAGTGCAAAGGCCTTGAAGGAGGTTAAATCCTCTTCCTGCCTTGTTTGTCATGCTGAGTTTTCGGACAGAGACAAGTTCGTGATCAATGGGAGTGAGGAGGAGGTAGCAGAAATGAGGGAGAGGATGGAGGAAGAGAAATCGAAATCGAAACCAAAGGAGAAGAAGACGAAGAAAGTGAGGAATGGGGAAGTGGGTATGGATGGAGATGCAACTGTGGAATTGGCAGCATCGTGTTTGTCTGGTAAAAAGCACGGTATTGAAGTTAAGGCTTTGGAGAAGGTTTCTGCTAAGCCCGACAGGCATAATAAGCGGCCAGATAGTGGAGTTCAGGTAAAGGTTGCAGCTAGTAATGGTGCTGTAAAGCGTTTCAAAGCAGCAGACATGGCCCCTGCCAATGCTACCAAAGAAGTCTATGCTTCGATATTCACTTCATCTAAGAAGTCAGATTTTAAGGAAACGTATAGTTGTAGATCTCTTCCACTCGGTCGAAACTGA

mRNA sequence

ATGCATCCGTTGAAGCAACACTGTTTTCAGTTCTTCGTTTGCTCTCCCGAGCTACAAATTCAATCCGAAATCGTAAACCTAGCACGAAATTCGGTCCAAACCCTTGAGGACCTTAAGTCTTCTCTTGTTCCCGAAACGATTGTGTCATCTTTCTACTTCACCCTGAATGGGAAACCCCTTCTTGATTCCACCACGATTCCCTGTTCTCTGATTCCCCCTCTGTCCACGTTAATTTTGAGAGCCAGGGTCCTTGGGGGCGGTGGCGATGGCGGGGCAACAGGGGCCGAATCTCGTGATTGCTACCTTAATATGTACGCAGAAAAGAAGCCCGATAAGGTTGATCCTAACGAGCAGAGGCTGTCCAAGTGGTTGAATTGCGCTCTTTCTAATGAGCCTTTGAGGGAACCTTGTGTGATCGATTGGCTTGGGAATATTTTCAATAAGGAGTCGCTTGTGCAGGCTTTGCTAGAGAAGAAGCTGCCAAAGGGATTTGGGCATATCAAGGGTCTGAAGGATATGATCAAGATTAATCTTTCGGTGATTCCCGGTACAGAATTGAGTCGCAATGCGATTTCAGGATCGCGGTTCCAATGCCCGATTACTGGCCTCGAGTTCAATGGCAAGTATAAGTTTTTTGCTCTGAGAACTTGTGGACATGTGCTGAGTGCAAAGGCCTTGAAGGAGGTTAAATCCTCTTCCTGCCTTGTTTGTCATGCTGAGTTTTCGGACAGAGACAAGTTCGTGATCAATGGGAGTGAGGAGGAGGTAGCAGAAATGAGGGAGAGGATGGAGGAAGAGAAATCGAAATCGAAACCAAAGGAGAAGAAGACGAAGAAAGTGAGGAATGGGGAAGTGGGTATGGATGGAGATGCAACTGTGGAATTGGCAGCATCGTGTTTGTCTGGTAAAAAGCACGGTATTGAAGTTAAGGCTTTGGAGAAGGTTTCTGCTAAGCCCGACAGGCATAATAAGCGGCCAGATAGTGGAGTTCAGGTAAAGGTTGCAGCTAGTAATGGTGCTGTAAAGCGTTTCAAAGCAGCAGACATGGCCCCTGCCAATGCTACCAAAGAAGTCTATGCTTCGATATTCACTTCATCTAAGAAGTCAGATTTTAAGGAAACGTATAGTTGTAGATCTCTTCCACTCGGTCGAAACTGA

Coding sequence (CDS)

ATGCATCCGTTGAAGCAACACTGTTTTCAGTTCTTCGTTTGCTCTCCCGAGCTACAAATTCAATCCGAAATCGTAAACCTAGCACGAAATTCGGTCCAAACCCTTGAGGACCTTAAGTCTTCTCTTGTTCCCGAAACGATTGTGTCATCTTTCTACTTCACCCTGAATGGGAAACCCCTTCTTGATTCCACCACGATTCCCTGTTCTCTGATTCCCCCTCTGTCCACGTTAATTTTGAGAGCCAGGGTCCTTGGGGGCGGTGGCGATGGCGGGGCAACAGGGGCCGAATCTCGTGATTGCTACCTTAATATGTACGCAGAAAAGAAGCCCGATAAGGTTGATCCTAACGAGCAGAGGCTGTCCAAGTGGTTGAATTGCGCTCTTTCTAATGAGCCTTTGAGGGAACCTTGTGTGATCGATTGGCTTGGGAATATTTTCAATAAGGAGTCGCTTGTGCAGGCTTTGCTAGAGAAGAAGCTGCCAAAGGGATTTGGGCATATCAAGGGTCTGAAGGATATGATCAAGATTAATCTTTCGGTGATTCCCGGTACAGAATTGAGTCGCAATGCGATTTCAGGATCGCGGTTCCAATGCCCGATTACTGGCCTCGAGTTCAATGGCAAGTATAAGTTTTTTGCTCTGAGAACTTGTGGACATGTGCTGAGTGCAAAGGCCTTGAAGGAGGTTAAATCCTCTTCCTGCCTTGTTTGTCATGCTGAGTTTTCGGACAGAGACAAGTTCGTGATCAATGGGAGTGAGGAGGAGGTAGCAGAAATGAGGGAGAGGATGGAGGAAGAGAAATCGAAATCGAAACCAAAGGAGAAGAAGACGAAGAAAGTGAGGAATGGGGAAGTGGGTATGGATGGAGATGCAACTGTGGAATTGGCAGCATCGTGTTTGTCTGGTAAAAAGCACGGTATTGAAGTTAAGGCTTTGGAGAAGGTTTCTGCTAAGCCCGACAGGCATAATAAGCGGCCAGATAGTGGAGTTCAGGTAAAGGTTGCAGCTAGTAATGGTGCTGTAAAGCGTTTCAAAGCAGCAGACATGGCCCCTGCCAATGCTACCAAAGAAGTCTATGCTTCGATATTCACTTCATCTAAGAAGTCAGATTTTAAGGAAACGTATAGTTGTAGATCTCTTCCACTCGGTCGAAACTGA

Protein sequence

MHPLKQHCFQFFVCSPELQIQSEIVNLARNSVQTLEDLKSSLVPETIVSSFYFTLNGKPLLDSTTIPCSLIPPLSTLILRARVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRLSKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFGHIKGLKDMIKINLSVIPGTELSRNAISGSRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHAEFSDRDKFVINGSEEEVAEMRERMEEEKSKSKPKEKKTKKVRNGEVGMDGDATVELAASCLSGKKHGIEVKALEKVSAKPDRHNKRPDSGVQVKVAASNGAVKRFKAADMAPANATKEVYASIFTSSKKSDFKETYSCRSLPLGRN

Homology

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BLAST of Carg09983 vs. NCBI nr
Match: KAG7023456.1 (Protein RTF2-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 758.1 bits (1956), Expect = 3.8e-215
Identity = 385/385 (100.00%), Postives = 385/385 (100.00%), Query Frame = 0


Query: 1   MHPLKQHCFQFFVCSPELQIQSEIVNLARNSVQTLEDLKSSLVPETIVSSFYFTLNGKPL 60
           MHPLKQHCFQFFVCSPELQIQSEIVNLARNSVQTLEDLKSSLVPETIVSSFYFTLNGKPL
Sbjct: 1   MHPLKQHCFQFFVCSPELQIQSEIVNLARNSVQTLEDLKSSLVPETIVSSFYFTLNGKPL 60

Query: 61  LDSTTIPCSLIPPLSTLILRARVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRL 120
           LDSTTIPCSLIPPLSTLILRARVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRL
Sbjct: 61  LDSTTIPCSLIPPLSTLILRARVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRL 120

Query: 121 SKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFGHIKGLKDMIKINLSV 180
           SKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFGHIKGLKDMIKINLSV
Sbjct: 121 SKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFGHIKGLKDMIKINLSV 180

Query: 181 IPGTELSRNAISGSRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHAE 240
           IPGTELSRNAISGSRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHAE
Sbjct: 181 IPGTELSRNAISGSRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHAE 240

Query: 241 FSDRDKFVINGSEEEVAEMRERMEEEKSKSKPKEKKTKKVRNGEVGMDGDATVELAASCL 300
           FSDRDKFVINGSEEEVAEMRERMEEEKSKSKPKEKKTKKVRNGEVGMDGDATVELAASCL
Sbjct: 241 FSDRDKFVINGSEEEVAEMRERMEEEKSKSKPKEKKTKKVRNGEVGMDGDATVELAASCL 300

Query: 301 SGKKHGIEVKALEKVSAKPDRHNKRPDSGVQVKVAASNGAVKRFKAADMAPANATKEVYA 360
           SGKKHGIEVKALEKVSAKPDRHNKRPDSGVQVKVAASNGAVKRFKAADMAPANATKEVYA
Sbjct: 301 SGKKHGIEVKALEKVSAKPDRHNKRPDSGVQVKVAASNGAVKRFKAADMAPANATKEVYA 360

Query: 361 SIFTSSKKSDFKETYSCRSLPLGRN 386
           SIFTSSKKSDFKETYSCRSLPLGRN
Sbjct: 361 SIFTSSKKSDFKETYSCRSLPLGRN 385

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BLAST of Carg09983 vs. NCBI nr
Match: KAG6589783.1 (Replication termination factor 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 754.6 bits (1947), Expect = 4.2e-214
Identity = 383/385 (99.48%), Postives = 384/385 (99.74%), Query Frame = 0


Query: 1   MHPLKQHCFQFFVCSPELQIQSEIVNLARNSVQTLEDLKSSLVPETIVSSFYFTLNGKPL 60
           MHPLKQHCFQFFVCSPELQIQ EIVNLARNSVQTLEDLKSSLVPETIVSSFYFTLNGKPL
Sbjct: 1   MHPLKQHCFQFFVCSPELQIQYEIVNLARNSVQTLEDLKSSLVPETIVSSFYFTLNGKPL 60

Query: 61  LDSTTIPCSLIPPLSTLILRARVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRL 120
           LDSTTIPCSLIPPLSTLILRARVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRL
Sbjct: 61  LDSTTIPCSLIPPLSTLILRARVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRL 120

Query: 121 SKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFGHIKGLKDMIKINLSV 180
           SKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEK+LPKGFGHIKGLKDMIKINLSV
Sbjct: 121 SKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKRLPKGFGHIKGLKDMIKINLSV 180

Query: 181 IPGTELSRNAISGSRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHAE 240
           IPGTELSRNAISGSRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHAE
Sbjct: 181 IPGTELSRNAISGSRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHAE 240

Query: 241 FSDRDKFVINGSEEEVAEMRERMEEEKSKSKPKEKKTKKVRNGEVGMDGDATVELAASCL 300
           FSDRDKFVINGSEEEVAEMRERMEEEKSKSKPKEKKTKKVRNGEVGMDGDATVELAASCL
Sbjct: 241 FSDRDKFVINGSEEEVAEMRERMEEEKSKSKPKEKKTKKVRNGEVGMDGDATVELAASCL 300

Query: 301 SGKKHGIEVKALEKVSAKPDRHNKRPDSGVQVKVAASNGAVKRFKAADMAPANATKEVYA 360
           SGKKHGIEVKALEKVSAKPDRHNKRPDSGVQVKVAASNGAVKRFKAADMAPANATKEVYA
Sbjct: 301 SGKKHGIEVKALEKVSAKPDRHNKRPDSGVQVKVAASNGAVKRFKAADMAPANATKEVYA 360

Query: 361 SIFTSSKKSDFKETYSCRSLPLGRN 386
           SIFTSSKKSDFKETYSCRSLPLGRN
Sbjct: 361 SIFTSSKKSDFKETYSCRSLPLGRN 385

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BLAST of Carg09983 vs. NCBI nr
Match: XP_022922055.1 (protein RTF2 homolog [Cucurbita moschata])

HSP 1 Score: 750.4 bits (1936), Expect = 7.9e-213
Identity = 381/385 (98.96%), Postives = 381/385 (98.96%), Query Frame = 0


Query: 1   MHPLKQHCFQFFVCSPELQIQSEIVNLARNSVQTLEDLKSSLVPETIVSSFYFTLNGKPL 60
           MHPLKQHCFQFFVCSPELQIQSEIVNLARNSVQTLEDLKSSLVPETIVSSFYFTLNGKPL
Sbjct: 1   MHPLKQHCFQFFVCSPELQIQSEIVNLARNSVQTLEDLKSSLVPETIVSSFYFTLNGKPL 60

Query: 61  LDSTTIPCSLIPPLSTLILRARVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRL 120
           LDSTTIPCSLIPPLSTLILR RVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRL
Sbjct: 61  LDSTTIPCSLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRL 120

Query: 121 SKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFGHIKGLKDMIKINLSV 180
           SKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFGHIKGLKDMIKINLSV
Sbjct: 121 SKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFGHIKGLKDMIKINLSV 180

Query: 181 IPGTELSRNAISGSRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHAE 240
           IPGTE SRNAISGSRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHAE
Sbjct: 181 IPGTESSRNAISGSRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHAE 240

Query: 241 FSDRDKFVINGSEEEVAEMRERMEEEKSKSKPKEKKTKKVRNGEVGMDGDATVELAASCL 300
           F DRDKFVINGSEEEVAEMRERMEEEKSKSKPKEKKTKKVRNGEVGMDGDATVELAASCL
Sbjct: 241 FLDRDKFVINGSEEEVAEMRERMEEEKSKSKPKEKKTKKVRNGEVGMDGDATVELAASCL 300

Query: 301 SGKKHGIEVKALEKVSAKPDRHNKRPDSGVQVKVAASNGAVKRFKAADMAPANATKEVYA 360
           SGKKHGIEVKALEKVSAKPDRHNKRPD GVQVKVAASNGAVKRFKAADMAPANATKEVYA
Sbjct: 301 SGKKHGIEVKALEKVSAKPDRHNKRPDGGVQVKVAASNGAVKRFKAADMAPANATKEVYA 360

Query: 361 SIFTSSKKSDFKETYSCRSLPLGRN 386
           SIFTSSKKSDFKETYSCRSLPLGRN
Sbjct: 361 SIFTSSKKSDFKETYSCRSLPLGRN 385

[Close]

BLAST of Carg09983 vs. NCBI nr
Match: XP_023516862.1 (protein RTF2 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 731.1 bits (1886), Expect = 5.0e-207
Identity = 372/385 (96.62%), Postives = 376/385 (97.66%), Query Frame = 0


Query: 1   MHPLKQHCFQFFVCSPELQIQSEIVNLARNSVQTLEDLKSSLVPETIVSSFYFTLNGKPL 60
           MH +KQHCFQFFVCSPELQIQSEIVN+ RNSVQTLE+LKS LVPETIVSSFYFTLNGKPL
Sbjct: 1   MHQMKQHCFQFFVCSPELQIQSEIVNVGRNSVQTLEELKSFLVPETIVSSFYFTLNGKPL 60

Query: 61  LDSTTIPCSLIPPLSTLILRARVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRL 120
           LDSTTIP SLIPPLSTLILR RVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRL
Sbjct: 61  LDSTTIPSSLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRL 120

Query: 121 SKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFGHIKGLKDMIKINLSV 180
           SKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFGHIKGLKDMIKINLSV
Sbjct: 121 SKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFGHIKGLKDMIKINLSV 180

Query: 181 IPGTELSRNAISGSRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHAE 240
           IPGTE SRNAISGSRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHAE
Sbjct: 181 IPGTESSRNAISGSRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHAE 240

Query: 241 FSDRDKFVINGSEEEVAEMRERMEEEKSKSKPKEKKTKKVRNGEVGMDGDATVELAASCL 300
           FSDRDKFVINGSEEEVAEMRERMEEEK KSKPKEKKTKKVRN EVGMDGDATVELAASCL
Sbjct: 241 FSDRDKFVINGSEEEVAEMRERMEEEKLKSKPKEKKTKKVRNVEVGMDGDATVELAASCL 300

Query: 301 SGKKHGIEVKALEKVSAKPDRHNKRPDSGVQVKVAASNGAVKRFKAADMAPANATKEVYA 360
           SGKKHGIEVKALEKVSAKPDRHNKRP+ GVQVKVAASNGAVKRFKAADMAPANATKEVYA
Sbjct: 301 SGKKHGIEVKALEKVSAKPDRHNKRPEGGVQVKVAASNGAVKRFKAADMAPANATKEVYA 360

Query: 361 SIFTSSKKSDFKETYSCRSLPLGRN 386
           SIFTSSKKSDFKETYSCRSLPLGRN
Sbjct: 361 SIFTSSKKSDFKETYSCRSLPLGRN 385

[Close]

BLAST of Carg09983 vs. NCBI nr
Match: XP_038879920.1 (replication termination factor 2 [Benincasa hispida])

HSP 1 Score: 645.6 bits (1664), Expect = 2.7e-181
Identity = 334/389 (85.86%), Postives = 354/389 (91.00%), Query Frame = 0


Query: 1   MHPLKQHCFQFFVCSPELQIQSEIVNLARNSVQTLEDLKSSLVPET----IVSSFYFTLN 60
           MHP  +H  Q F+ S +LQIQS+IVNL ++  QTLEDLK SL+PET    + SSFYFTLN
Sbjct: 1   MHPKNEHRLQIFLHSLDLQIQSQIVNLPQSPAQTLEDLKFSLLPETLASRVASSFYFTLN 60

Query: 61  GKPLLDSTTIPCSLIPPLSTLILRARVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPN 120
           GKPL DSTTIP SL+PPLSTLILR RVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPN
Sbjct: 61  GKPLPDSTTIPSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPN 120

Query: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFGHIKGLKDMIKI 180
           EQRLSKWLNCALSNEPLREPCVIDWLGN+FNKESLV ALLEKKLPKGFGHIKGLKDMIKI
Sbjct: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVHALLEKKLPKGFGHIKGLKDMIKI 180

Query: 181 NLSVIPGTELSRNAISGSRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240
           NLSVIPGTE   NAIS  RFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV
Sbjct: 181 NLSVIPGTESRGNAISEPRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240

Query: 241 CHAEFSDRDKFVINGSEEEVAEMRERMEEEKSKSKPKEKKTKKVRNGEVGMDGDATVELA 300
           CHAEF++RDKFVINGSEEEV EMRERMEEEKSKS+ KEKKTKKVRN E G++GD +V+ A
Sbjct: 241 CHAEFTNRDKFVINGSEEEVEEMRERMEEEKSKSRSKEKKTKKVRNEEGGINGDMSVDFA 300

Query: 301 ASCLSGKKHGIEVKALEKVSAKPDRHNKRPDSGVQVKVAASNGAVKRFKAADMAPANATK 360
           AS LSGKKHGIEVKALEKVSAKP+RH +RPD GVQVKVAASNGAVKRFKAADM PANATK
Sbjct: 301 ASRLSGKKHGIEVKALEKVSAKPERH-ERPDGGVQVKVAASNGAVKRFKAADMVPANATK 360

Query: 361 EVYASIFTSSKKSDFKETYSCRSLPLGRN 386
           EVYASIFTSS+KSDFKETYSCRSLPLGRN
Sbjct: 361 EVYASIFTSSRKSDFKETYSCRSLPLGRN 388

[Close]

BLAST of Carg09983 vs. ExPASy Swiss-Prot
Match: Q3T1J8 (Replication termination factor 2 OS=Rattus norvegicus OX=10116 GN=Rtf2 PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.2e-30
Identity = 97/274 (35.40%), Postives = 145/274 (52.92%), Query Frame = 0


Query: 108 KKPDKVDPNEQRLSKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFG-- 167
           KK +KVD + + +++W  C LS E LR P V   LG ++NK+++++ LL+K   K  G  
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEVLRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKA 78

Query: 168 --HIKGLKDMIKINLSVIPGTELSRNAISG--------SRFQCPITGLEFNGKYKFFALR 227
             HI+ +K++ ++ LS  P  E  +    G        +RF CP+ GLE NG+++F  LR
Sbjct: 79  TSHIRSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLR 138

Query: 228 TCGHVLSAKALKEVKSSSCLVCHAEFSDRDKFVINGSEEEVAEMRERMEEEKSKSKPKEK 287
            CG V S +ALKE+K+  C  C A F + D  V+NG++E+V  ++ RMEE + ++K  EK
Sbjct: 139 CCGCVFSERALKEIKAEVCHTCGAAFQEEDIIVLNGTKEDVEMLKRRMEERRLRAK-LEK 198

Query: 288 KTKKVRNGE----VGMDGDATVELAASCLSGKKHGIEVKALEKVSAKPDRHNKRPDSGVQ 347
           KTKK +  E    +G+  D+     A   +GK    +    EK S+   R      S   
Sbjct: 199 KTKKPKTAESASKLGISQDSAGPSKAK--AGKSEEADPDPREKKSSLAPRGTASNGSASG 258

Query: 348 VKVAASNGAVKRFKAADMAPANATKEVYASIFTS 366
                  GA+KR   AD    +   E Y SIFTS
Sbjct: 259 KVGKPPCGALKR-SIAD----SEESETYKSIFTS 284

[Close]

BLAST of Carg09983 vs. ExPASy Swiss-Prot
Match: Q99K95 (Replication termination factor 2 OS=Mus musculus OX=10090 GN=Rtf2 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.6e-30
Identity = 96/279 (34.41%), Postives = 146/279 (52.33%), Query Frame = 0


Query: 108 KKPDKVDPNEQRLSKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFG-- 167
           KK +KVD + + +++W  C LS E LR P V   LG ++NK+++++ LL+K   K  G  
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKA 78

Query: 168 --HIKGLKDMIKINLSVIPGTELSRNAISG--------SRFQCPITGLEFNGKYKFFALR 227
             HI+ +K++ ++ LS  P  E  +    G        +RF CP+ GLE NG+++F  LR
Sbjct: 79  ASHIRSIKNVTELRLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLR 138

Query: 228 TCGHVLSAKALKEVKSSSCLVCHAEFSDRDKFVINGSEEEVAEMRERMEEEKSKSKPKEK 287
            CG V S +ALKE+K+  C  C A F + D  V+NG++E+V  +++RMEE + ++K  EK
Sbjct: 139 CCGCVFSERALKEIKAEVCHTCGAAFQEEDIIVLNGTKEDVEMLKKRMEERRLRAK-LEK 198

Query: 288 KTKKVRNGEVGMDGDATVELAASCLSGKKHGIEVKALEKVSAKPDRHNKRPDSGVQVKVA 347
           KTKK +          T + +A          +VK+ +   A PD   K+  S    + A
Sbjct: 199 KTKKPKTATECASKPGTTQDSAG-------PSKVKSGKPEEADPDPREKK--STPAPRGA 258

Query: 348 ASNGAVKRFKAADMAPANATK---------EVYASIFTS 366
           A+NG+          P  A K         E Y SIFTS
Sbjct: 259 ATNGSAS--GKVGKPPCGALKRSIADSEESETYKSIFTS 285

[Close]

BLAST of Carg09983 vs. ExPASy Swiss-Prot
Match: A5GFW7 (Replication termination factor 2 OS=Sus scrofa OX=9823 GN=RTF2 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.6e-30
Identity = 95/282 (33.69%), Postives = 147/282 (52.13%), Query Frame = 0


Query: 108 KKPDKVDPNEQRLSKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFG-- 167
           KK +KVD + + +++W  C LS E LR P V   LG ++NK+++++ LL+K   K  G  
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSSEKALGKA 78

Query: 168 --HIKGLKDMIKINLSVIPGTELSRNAISG--------SRFQCPITGLEFNGKYKFFALR 227
             HIK +K++ ++ LS  P  E  + +  G        +RF CP+ GLE NG+++F  LR
Sbjct: 79  ASHIKSIKNVTELRLSDNPAWEGDKGSTKGDKHDDLQRARFICPVVGLEMNGRHRFCYLR 138

Query: 228 TCGHVLSAKALKEVKSSSCLVCHAEFSDRDKFVINGSEEEVAEMRERMEEEKSKSKPKEK 287
            CG V S +ALKE+K+  C  C A F + D  V+NG++E+VA ++ RMEE + ++K   K
Sbjct: 139 CCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVAMLQTRMEERRLRAK-LGK 198

Query: 288 KTKKVRNGEVGMDGDATVELAASCLSGKKHGIEVKALEKVSAKPDRHNKRPDSGVQVKVA 347
           KTKK +  E     D + E             ++KA +      D   K+  S  +   A
Sbjct: 199 KTKKPKAAESVSKSDISEEAPGPS--------KMKAGKPEETSLDSREKKTSSAPRSAAA 258

Query: 348 ASNGAVKRFKAADMAPA-----NATKEVYASIFT---SSKKS 370
             + + K  K    AP      +   E Y S+FT   S+K+S
Sbjct: 259 HGSSSGKAGKPVCGAPKRSIADSGESEAYKSLFTTHSSAKRS 291

[Close]

BLAST of Carg09983 vs. ExPASy Swiss-Prot
Match: Q5R9P9 (Replication termination factor 2 OS=Pongo abelii OX=9601 GN=RTF2 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.7e-29
Identity = 93/276 (33.70%), Postives = 147/276 (53.26%), Query Frame = 0


Query: 108 KKPDKVDPNEQRLSKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFG-- 167
           KK +KVD + + +++W  C LS E LR P V   LG ++NK+++++ LL+K   K  G  
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKA 78

Query: 168 --HIKGLKDMIKINLSVIPGTELSRNAISG--------SRFQCPITGLEFNGKYKFFALR 227
             HIK +K++ ++ LS  P  E  +    G        +RF CP+ GLE NG+++F  LR
Sbjct: 79  ASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLR 138

Query: 228 TCGHVLSAKALKEVKSSSCLVCHAEFSDRDKFVINGSEEEVAEMRERMEEEKSKSKPKEK 287
            CG V S +ALKE+K+  C  C A F + D  V+NG++E+V  ++ RMEE + ++K  EK
Sbjct: 139 CCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTKEDVDVLKTRMEERRLRAK-LEK 198

Query: 288 KTKKVRNGEVGMDGDATVEL--AASCLSGKKHGIEVKALEKVSAKPDRHNKRPDSGVQVK 347
           KTKK +  E     D + E    +   +GK     + + EK +    +     +S     
Sbjct: 199 KTKKPKAAESVSKPDVSEEAPGPSKVKTGKPEEASLDSREKKTNLAPKSTATNESSSGKA 258

Query: 348 VAASNGAVKRFKAADMAPANATKEVYASIFTSSKKS 370
                GA KR   AD   + A K ++ +  +S+K+S
Sbjct: 259 GKPPCGATKR-SIADSEESEAYKSLFTT-HSSAKRS 291

[Close]

BLAST of Carg09983 vs. ExPASy Swiss-Prot
Match: Q4R594 (Replication termination factor 2 OS=Macaca fascicularis OX=9541 GN=RTF2 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.0e-29
Identity = 94/280 (33.57%), Postives = 148/280 (52.86%), Query Frame = 0


Query: 108 KKPDKVDPNEQRLSKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFG-- 167
           KK +KVD + + +++W  C LS E LR P V   LG ++NK+++++ LL+K   K  G  
Sbjct: 19  KKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKSAEKALGKA 78

Query: 168 --HIKGLKDMIKINLSVIPGTELSRNAISG--------SRFQCPITGLEFNGKYKFFALR 227
             HIK +K++ ++ LS  P  E  +    G        +RF CP+ GLE NG+++F  LR
Sbjct: 79  ASHIKSIKNVTELKLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLR 138

Query: 228 TCGHVLSAKALKEVKSSSCLVCHAEFSDRDKFVINGSEEEVAEMRERMEEEKSKSKPKEK 287
            CG V S +ALKE+K+  C  C A F + D  V+NG+ E+V  ++ RMEE + ++K  EK
Sbjct: 139 CCGCVFSERALKEIKAEVCHTCGAAFQEDDVIVLNGTNEDVDVLKARMEERRLRAK-LEK 198

Query: 288 KTKKVRNGEVGMDGDATVEL--AASCLSGKKHGIEVKALEKVSAKPDRHNKRPDSGVQVK 347
           KTKK +  E     D + E    +   +GK     + + EK      ++N  P S    +
Sbjct: 199 KTKKPKAAESVSKPDVSEEAPGPSKVKTGKPEETSLDSREK------KNNLAPKSAATNE 258

Query: 348 VAASNGAVKRFKAADMAPANATK-EVYASIFT---SSKKS 370
             +         A   + A++ + E Y S+FT   S+K+S
Sbjct: 259 SFSGKAGKPLCGATKRSIADSEESEAYKSLFTTHSSAKRS 291

[Close]

BLAST of Carg09983 vs. ExPASy TrEMBL
Match: A0A6J1E7I8 (Replication termination factor 2 OS=Cucurbita moschata OX=3662 GN=LOC111430120 PE=3 SV=1)

HSP 1 Score: 750.4 bits (1936), Expect = 3.8e-213
Identity = 381/385 (98.96%), Postives = 381/385 (98.96%), Query Frame = 0


Query: 1   MHPLKQHCFQFFVCSPELQIQSEIVNLARNSVQTLEDLKSSLVPETIVSSFYFTLNGKPL 60
           MHPLKQHCFQFFVCSPELQIQSEIVNLARNSVQTLEDLKSSLVPETIVSSFYFTLNGKPL
Sbjct: 1   MHPLKQHCFQFFVCSPELQIQSEIVNLARNSVQTLEDLKSSLVPETIVSSFYFTLNGKPL 60

Query: 61  LDSTTIPCSLIPPLSTLILRARVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRL 120
           LDSTTIPCSLIPPLSTLILR RVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRL
Sbjct: 61  LDSTTIPCSLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRL 120

Query: 121 SKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFGHIKGLKDMIKINLSV 180
           SKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFGHIKGLKDMIKINLSV
Sbjct: 121 SKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFGHIKGLKDMIKINLSV 180

Query: 181 IPGTELSRNAISGSRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHAE 240
           IPGTE SRNAISGSRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHAE
Sbjct: 181 IPGTESSRNAISGSRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHAE 240

Query: 241 FSDRDKFVINGSEEEVAEMRERMEEEKSKSKPKEKKTKKVRNGEVGMDGDATVELAASCL 300
           F DRDKFVINGSEEEVAEMRERMEEEKSKSKPKEKKTKKVRNGEVGMDGDATVELAASCL
Sbjct: 241 FLDRDKFVINGSEEEVAEMRERMEEEKSKSKPKEKKTKKVRNGEVGMDGDATVELAASCL 300

Query: 301 SGKKHGIEVKALEKVSAKPDRHNKRPDSGVQVKVAASNGAVKRFKAADMAPANATKEVYA 360
           SGKKHGIEVKALEKVSAKPDRHNKRPD GVQVKVAASNGAVKRFKAADMAPANATKEVYA
Sbjct: 301 SGKKHGIEVKALEKVSAKPDRHNKRPDGGVQVKVAASNGAVKRFKAADMAPANATKEVYA 360

Query: 361 SIFTSSKKSDFKETYSCRSLPLGRN 386
           SIFTSSKKSDFKETYSCRSLPLGRN
Sbjct: 361 SIFTSSKKSDFKETYSCRSLPLGRN 385

[Close]

BLAST of Carg09983 vs. ExPASy TrEMBL
Match: A0A6J1F067 (Replication termination factor 2 OS=Cucurbita moschata OX=3662 GN=LOC111440971 PE=3 SV=1)

HSP 1 Score: 634.4 bits (1635), Expect = 3.1e-178
Identity = 331/389 (85.09%), Postives = 351/389 (90.23%), Query Frame = 0


Query: 1   MHPLKQHCFQFFVCSPELQIQSEIVNLARNSVQTLEDLKSSLVPET----IVSSFYFTLN 60
           M+P  QH  QFFV SP+LQIQS+IVNLA+ S Q+L DLK SL+  T    + SSFYFTLN
Sbjct: 1   MYPKNQHRLQFFVHSPDLQIQSKIVNLAQTSAQSLADLKLSLILNTPASRLASSFYFTLN 60

Query: 61  GKPLLDSTTIPCSLIPPLSTLILRARVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPN 120
           GKPLLDS TI  SL+PPLSTLILR RVLGGGGDGGATGAESRDCYL MYAEKKPDKVDPN
Sbjct: 61  GKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKKPDKVDPN 120

Query: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFGHIKGLKDMIKI 180
           EQRLSKWLNCALSNEPLREPCVIDWLGNIFNKE LV ALLEKKLPKGFGHIKGLKDMIKI
Sbjct: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNIFNKEPLVHALLEKKLPKGFGHIKGLKDMIKI 180

Query: 181 NLSVIPGTELSRNAISGSRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240
           NLS++PGTE   NAIS +RFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV
Sbjct: 181 NLSMVPGTESRGNAISEARFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240

Query: 241 CHAEFSDRDKFVINGSEEEVAEMRERMEEEKSKSKPKEKKTKKVRNGEVGMDGDATVELA 300
           CHAEF DRDKFVINGSEEEV  MRERMEEEK+KS  KEKKTKKVR GEVGM+GD +V+LA
Sbjct: 241 CHAEFMDRDKFVINGSEEEVVRMRERMEEEKTKS--KEKKTKKVRTGEVGMNGDVSVDLA 300

Query: 301 ASCLSGKKHGIEVKALEKVSAKPDRHNKRPDSGVQVKVAASNGAVKRFKAADMAPANATK 360
           +S LSGKKHGIE KAL KVSAKP++H +RPDSGVQVKVAASNGAVKRFKAADMAPANATK
Sbjct: 301 SSRLSGKKHGIEGKALGKVSAKPEKH-ERPDSGVQVKVAASNGAVKRFKAADMAPANATK 360

Query: 361 EVYASIFTSSKKSDFKETYSCRSLPLGRN 386
           EVYASIFTSS+KSDFKETYSCRSLPLGRN
Sbjct: 361 EVYASIFTSSRKSDFKETYSCRSLPLGRN 386

[Close]

BLAST of Carg09983 vs. ExPASy TrEMBL
Match: A0A5A7SWS4 (Replication termination factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00470 PE=3 SV=1)

HSP 1 Score: 634.0 bits (1634), Expect = 4.0e-178
Identity = 330/389 (84.83%), Postives = 350/389 (89.97%), Query Frame = 0


Query: 1   MHPLKQHCFQFFVCSPELQIQSEIVNLARNSVQTLEDLKSSLVPET----IVSSFYFTLN 60
           MHP  QH  Q F+ SP+LQIQS+IV+L + S +TLEDLK SL+ ET    + SS YFTLN
Sbjct: 1   MHPKNQHRLQIFLHSPDLQIQSKIVDLPQTSAKTLEDLKFSLLSETLASRVASSLYFTLN 60

Query: 61  GKPLLDSTTIPCSLIPPLSTLILRARVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPN 120
           GKPLLDSTTI  SLIPPLSTLILR RVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPN
Sbjct: 61  GKPLLDSTTI--SLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPN 120

Query: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFGHIKGLKDMIKI 180
           EQRLSKWLNCALSNEPL EPCVIDWLGN+FNKESLVQALLEKKLPKGFGHIKGLKDMIKI
Sbjct: 121 EQRLSKWLNCALSNEPLSEPCVIDWLGNVFNKESLVQALLEKKLPKGFGHIKGLKDMIKI 180

Query: 181 NLSVIPGTELSRNAISGSRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240
           N S+IPGTE   NAIS  RFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV
Sbjct: 181 NFSMIPGTESRGNAISEPRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240

Query: 241 CHAEFSDRDKFVINGSEEEVAEMRERMEEEKSKSKPKEKKTKKVRNGEVGMDGDATVELA 300
           CH EF++RDKFVINGSEEEV EMRERMEEEKSKSK KEKKTKKVRNGEVGM+GD T++LA
Sbjct: 241 CHTEFTERDKFVINGSEEEVEEMRERMEEEKSKSKSKEKKTKKVRNGEVGMNGDVTMDLA 300

Query: 301 ASCLSGKKHGIEVKALEKVSAKPDRHNKRPDSGVQVKVAASNGAVKRFKAADMAPANATK 360
            S LSGKKHGIE++ LEKVSAKP+RH +R D G QVKVAASNGAVKRFKAADM PANATK
Sbjct: 301 TSRLSGKKHGIELQTLEKVSAKPERH-ERLDGGAQVKVAASNGAVKRFKAADMVPANATK 360

Query: 361 EVYASIFTSSKKSDFKETYSCRSLPLGRN 386
           EVYASIFTSS+KSDFKETYSCRSLPLGRN
Sbjct: 361 EVYASIFTSSRKSDFKETYSCRSLPLGRN 386

[Close]

BLAST of Carg09983 vs. ExPASy TrEMBL
Match: A0A1S3B9F3 (Replication termination factor 2 OS=Cucumis melo OX=3656 GN=LOC103487489 PE=3 SV=1)

HSP 1 Score: 634.0 bits (1634), Expect = 4.0e-178
Identity = 330/389 (84.83%), Postives = 350/389 (89.97%), Query Frame = 0


Query: 1   MHPLKQHCFQFFVCSPELQIQSEIVNLARNSVQTLEDLKSSLVPET----IVSSFYFTLN 60
           MHP  QH  Q F+ SP+LQIQS+IV+L + S +TLEDLK SL+ ET    + SS YFTLN
Sbjct: 1   MHPKNQHRLQIFLHSPDLQIQSKIVDLPQTSAKTLEDLKFSLLSETLASRVASSLYFTLN 60

Query: 61  GKPLLDSTTIPCSLIPPLSTLILRARVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPN 120
           GKPLLDSTTI  SLIPPLSTLILR RVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPN
Sbjct: 61  GKPLLDSTTI--SLIPPLSTLILRTRVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPN 120

Query: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFGHIKGLKDMIKI 180
           EQRLSKWLNCALSNEPL EPCVIDWLGN+FNKESLVQALLEKKLPKGFGHIKGLKDMIKI
Sbjct: 121 EQRLSKWLNCALSNEPLSEPCVIDWLGNVFNKESLVQALLEKKLPKGFGHIKGLKDMIKI 180

Query: 181 NLSVIPGTELSRNAISGSRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240
           N S+IPGTE   NAIS  RFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV
Sbjct: 181 NFSMIPGTESRGNAISEPRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240

Query: 241 CHAEFSDRDKFVINGSEEEVAEMRERMEEEKSKSKPKEKKTKKVRNGEVGMDGDATVELA 300
           CH EF++RDKFVINGSEEEV EMRERMEEEKSKSK KEKKTKKVRNGEVGM+GD T++LA
Sbjct: 241 CHTEFTERDKFVINGSEEEVEEMRERMEEEKSKSKSKEKKTKKVRNGEVGMNGDVTMDLA 300

Query: 301 ASCLSGKKHGIEVKALEKVSAKPDRHNKRPDSGVQVKVAASNGAVKRFKAADMAPANATK 360
            S LSGKKHGIE++ LEKVSAKP+RH +R D G QVKVAASNGAVKRFKAADM PANATK
Sbjct: 301 TSRLSGKKHGIELQTLEKVSAKPERH-ERLDGGAQVKVAASNGAVKRFKAADMVPANATK 360

Query: 361 EVYASIFTSSKKSDFKETYSCRSLPLGRN 386
           EVYASIFTSS+KSDFKETYSCRSLPLGRN
Sbjct: 361 EVYASIFTSSRKSDFKETYSCRSLPLGRN 386

[Close]

BLAST of Carg09983 vs. ExPASy TrEMBL
Match: A0A6J1C136 (Replication termination factor 2 OS=Momordica charantia OX=3673 GN=LOC111007406 PE=3 SV=1)

HSP 1 Score: 630.6 bits (1625), Expect = 4.4e-177
Identity = 327/389 (84.06%), Postives = 350/389 (89.97%), Query Frame = 0


Query: 1   MHPLKQHCFQFFVCSPELQIQSEIVNLARNSVQTLEDLKSSLVPETI----VSSFYFTLN 60
           MHP  Q   Q FV SP+LQIQS+I+NLAR S QTLEDLK SL+P+T+     SSFYFTLN
Sbjct: 1   MHPKNQQRLQIFVHSPDLQIQSKILNLARTSAQTLEDLKFSLLPQTLAPRSASSFYFTLN 60

Query: 61  GKPLLDSTTIPCSLIPPLSTLILRARVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPN 120
           GKPLLDST +  SLI PLSTLILR R+ GGGGDGGATGAESRDCYLNMYAEKKPDKVDPN
Sbjct: 61  GKPLLDSTPVTSSLISPLSTLILRTRIHGGGGDGGATGAESRDCYLNMYAEKKPDKVDPN 120

Query: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFGHIKGLKDMIKI 180
           EQRLSKWLNCALSNEPLREPCVIDWLGN+FNKESLVQALLEKKLPKGFGH+KGLKDMIKI
Sbjct: 121 EQRLSKWLNCALSNEPLREPCVIDWLGNVFNKESLVQALLEKKLPKGFGHVKGLKDMIKI 180

Query: 181 NLSVIPGTELSRNAISGSRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240
           +LS IPGTE   NAISG RFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV
Sbjct: 181 SLSAIPGTESGSNAISGPRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLV 240

Query: 241 CHAEFSDRDKFVINGSEEEVAEMRERMEEEKSKSKPKEKKTKKVRNGEVGMDGDATVELA 300
           CHAEF DRDK VINGSEEEVA +RERMEEEKSKS  KEK+ KKV+NGEVGM+GD +V+LA
Sbjct: 241 CHAEFKDRDKLVINGSEEEVAVLRERMEEEKSKS--KEKRLKKVKNGEVGMNGDVSVDLA 300

Query: 301 ASCLSGKKHGIEVKALEKVSAKPDRHNKRPDSGVQVKVAASNGAVKRFKAADMAPANATK 360
           +S LSGKKHGIEVKA EKVSAK +R N+RPD G+QVKVAA+NGAVKRFKAADMAP NATK
Sbjct: 301 SSRLSGKKHGIEVKASEKVSAKLER-NERPDGGIQVKVAANNGAVKRFKAADMAPPNATK 360

Query: 361 EVYASIFTSSKKSDFKETYSCRSLPLGRN 386
           EVYASIFTSS+KSDFKETYSCRSLPLGRN
Sbjct: 361 EVYASIFTSSRKSDFKETYSCRSLPLGRN 386

[Close]

BLAST of Carg09983 vs. TAIR 10
Match: AT5G58020.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF602 (InterPro:IPR006735); Has 385 Blast hits to 385 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 117; Plants - 50; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). )

HSP 1 Score: 381.7 bits (979), Expect = 6.9e-106
Identity = 225/383 (58.75%), Postives = 265/383 (69.19%), Query Frame = 0


Query: 10  QFFVCSPELQIQSEIVNLARNSVQTLEDLK--SSLVPETIVSSF---YFTLNGKPLLDST 69
           Q FV SP+ Q   ++V L  +  Q+L  L   +SL+  +   SF     TL+GK L  ST
Sbjct: 6   QIFVKSPDCQ---KVVALQLDPAQSLLTLSGITSLLESSQRISFSACSITLDGKLLNGST 65

Query: 70  TIPCSLIPPLSTLILRARVLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRLSKWL 129
            I  S +P +S L L  R+ GGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRLSKWL
Sbjct: 66  RIQVSKLPSVSMLTLFPRLRGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRLSKWL 125

Query: 130 NCALSNEPLREPCVIDWLGNIFNKESLVQALLEKKLPKGFGHIKGLKDMIKINLSVIPGT 189
           NCALSNEPL EPCVID LGN+FNKE LV ALL K+LPK F +IKGLKDM+ I L+ + G+
Sbjct: 126 NCALSNEPLAEPCVIDLLGNLFNKEVLVHALLSKRLPKQFSYIKGLKDMVNIKLTPVAGS 185

Query: 190 ELSRNAISGSRFQCPITGLEFNGKYKFFALRTCGHVLSAKALKEVKSSSCLVCHAEFSDR 249
           + S    + ++FQCP++GLEFNGKYKFFALR CGHV+SAKALKEVKSSSCLVCHA+  D 
Sbjct: 186 DGSSQDTTSAQFQCPVSGLEFNGKYKFFALRGCGHVMSAKALKEVKSSSCLVCHADVKDS 245

Query: 250 DKFVINGSEEEVAEMRERMEEEKSKSKPKEKKTKKVRNGEVGMDGDATVELAASCLSGKK 309
           DK VING+EEEV  +RERMEEEK+K + K+  +KK +NG   +  D   ++A       K
Sbjct: 246 DKIVINGTEEEVDLLRERMEEEKAKLREKKGVSKKSKNG-AAVVADTGAKVA-------K 305

Query: 310 HGIEVKALEKVSAKPDRHNKRPDSGVQVKVAASNG-AVKRFKAADMAPANATKEVYASIF 369
             IE                  D  V       NG  VK+FKAAD  P NATKEVYAS+F
Sbjct: 306 RQIE------------------DGNVN-----GNGITVKKFKAADKVPVNATKEVYASLF 354

Query: 370 TSS-KKSDFKETYSCRSLPLGRN 386
           TSS KKSDF+ETYSCRSLPLGRN
Sbjct: 366 TSSKKKSDFRETYSCRSLPLGRN 354

The following BLAST results are available for this feature:

BLAST of Carg09983 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023456.1	3.8e-215	100.00	Protein RTF2-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6589783.1	4.2e-214	99.48	Replication termination factor 2, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_022922055.1	7.9e-213	98.96	protein RTF2 homolog [Cucurbita moschata]	[more]
XP_023516862.1	5.0e-207	96.62	protein RTF2 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_038879920.1	2.7e-181	85.86	replication termination factor 2 [Benincasa hispida]	[more]

BLAST of Carg09983 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3T1J8	1.2e-30	35.40	Replication termination factor 2 OS=Rattus norvegicus OX=10116 GN=Rtf2 PE=2 SV=1	[more]
Q99K95	4.6e-30	34.41	Replication termination factor 2 OS=Mus musculus OX=10090 GN=Rtf2 PE=1 SV=1	[more]
A5GFW7	4.6e-30	33.69	Replication termination factor 2 OS=Sus scrofa OX=9823 GN=RTF2 PE=3 SV=1	[more]
Q5R9P9	1.7e-29	33.70	Replication termination factor 2 OS=Pongo abelii OX=9601 GN=RTF2 PE=2 SV=1	[more]
Q4R594	3.0e-29	33.57	Replication termination factor 2 OS=Macaca fascicularis OX=9541 GN=RTF2 PE=2 SV=...	[more]

BLAST of Carg09983 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E7I8	3.8e-213	98.96	Replication termination factor 2 OS=Cucurbita moschata OX=3662 GN=LOC111430120 P...	[more]
A0A6J1F067	3.1e-178	85.09	Replication termination factor 2 OS=Cucurbita moschata OX=3662 GN=LOC111440971 P...	[more]
A0A5A7SWS4	4.0e-178	84.83	Replication termination factor 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3B9F3	4.0e-178	84.83	Replication termination factor 2 OS=Cucumis melo OX=3656 GN=LOC103487489 PE=3 SV...	[more]
A0A6J1C136	4.4e-177	84.06	Replication termination factor 2 OS=Momordica charantia OX=3673 GN=LOC111007406 ...	[more]

BLAST of Carg09983 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58020.1	6.9e-106	58.75	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF602 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 249..269
None	No IPR available	PFAM	PF04641	Rtf2	coord: 86..369 e-value: 8.8E-74 score: 248.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 258..284
None	No IPR available	PANTHER	PTHR12775:SF1	BNACNNG39770D PROTEIN	coord: 331..385
None	No IPR available	PANTHER	PTHR12775:SF1	BNACNNG39770D PROTEIN	coord: 10..297
IPR006735	Replication termination factor 2	PANTHER	PTHR12775	PROTEIN C20ORF43 HOMOLOG	coord: 331..385 coord: 10..297
IPR027799	Replication termination factor 2, RING-finger	CDD	cd16653	RING-like_Rtf2	coord: 196..241 e-value: 3.60806E-25 score: 94.6151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09983-RA	Carg09983-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902979	mitotic DNA replication termination
cellular_component	GO:0005634	nucleus