Carg09959 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09959
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Serine-rich protein-related
Location	Carg_Chr10: 2332519 .. 2332857 (+)
RNA-Seq Expression	Carg09959
Synteny	Carg09959

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCAAAATCTGGATCCTCCAATCCCAAACTGCAGAGCATCGGCGGTTCCCGCAAGTGCCTCTGTTCTCCCACCACCCATCCTGGCTCTTTCCGCTGCAGTATTCATCGGAACCGCCGCAAGGTTTCCGCTAGGTCATCGTCCTCATCCATTGCTGCCATTACCACTGCTCAATTGAAGCTTACGATGTTGGCGAAGGCGAATGCGTTGAGGTCGTTTCTTCAGCAGATCATCAATCCCTCCAGTAAAGATCTTCAGCGGCGGAGGAATTTTCGTCCCAAACCTTCCAGGTTTTGCTTGATGAACAATCATGGAACTGGATTGGCTGTTTCTTAA

mRNA sequence

ATGGCCTCAAAATCTGGATCCTCCAATCCCAAACTGCAGAGCATCGGCGGTTCCCGCAAGTGCCTCTGTTCTCCCACCACCCATCCTGGCTCTTTCCGCTGCAGTATTCATCGGAACCGCCGCAAGGTTTCCGCTAGGTCATCGTCCTCATCCATTGCTGCCATTACCACTGCTCAATTGAAGCTTACGATGTTGGCGAAGGCGAATGCGTTGAGGTCGTTTCTTCAGCAGATCATCAATCCCTCCAGTAAAGATCTTCAGCGGCGGAGGAATTTTCGTCCCAAACCTTCCAGGTTTTGCTTGATGAACAATCATGGAACTGGATTGGCTGTTTCTTAA

Coding sequence (CDS)

ATGGCCTCAAAATCTGGATCCTCCAATCCCAAACTGCAGAGCATCGGCGGTTCCCGCAAGTGCCTCTGTTCTCCCACCACCCATCCTGGCTCTTTCCGCTGCAGTATTCATCGGAACCGCCGCAAGGTTTCCGCTAGGTCATCGTCCTCATCCATTGCTGCCATTACCACTGCTCAATTGAAGCTTACGATGTTGGCGAAGGCGAATGCGTTGAGGTCGTTTCTTCAGCAGATCATCAATCCCTCCAGTAAAGATCTTCAGCGGCGGAGGAATTTTCGTCCCAAACCTTCCAGGTTTTGCTTGATGAACAATCATGGAACTGGATTGGCTGTTTCTTAA

Protein sequence

MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQLKLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS

Homology

[Close]

BLAST of Carg09959 vs. NCBI nr
Match: XP_022921799.1 (uncharacterized protein LOC111429944 [Cucurbita moschata] >KAG7023478.1 hypothetical protein SDJN02_14503, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216.1 bits (549), Expect = 1.6e-52
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
           MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL
Sbjct: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60

Query: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS
Sbjct: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 112

[Close]

BLAST of Carg09959 vs. NCBI nr
Match: XP_023515429.1 (uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-51
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
           MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL
Sbjct: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60

Query: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           KLTMLAKANALRSFL QIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS
Sbjct: 61  KLTMLAKANALRSFLLQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 112

[Close]

BLAST of Carg09959 vs. NCBI nr
Match: KAG6589806.1 (hypothetical protein SDJN03_15229, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 185.3 bits (469), Expect = 3.0e-43
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
          MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL
Sbjct: 1  MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60

Query: 61 KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSR 99
          KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSR
Sbjct: 61 KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSR 98

[Close]

BLAST of Carg09959 vs. NCBI nr
Match: XP_023003805.1 (uncharacterized protein LOC111497277 [Cucurbita maxima])

HSP 1 Score: 177.2 bits (448), Expect = 8.0e-41
Identity = 90/112 (80.36%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
           MA+KS S+N KLQS+G SRKCLCSPTTHPGSFRCS HRNRRK SARSSSSSI+AIT+AQL
Sbjct: 1   MATKSRSANSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSISAITSAQL 60

Query: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           +LT+ AKANA+R+FL  II PSS DLQRRRNF P+PSRFCLMN HGTGLAVS
Sbjct: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFLPRPSRFCLMNKHGTGLAVS 112

[Close]

BLAST of Carg09959 vs. NCBI nr
Match: XP_022927032.1 (uncharacterized protein LOC111433980 [Cucurbita moschata] >KAG7021749.1 hypothetical protein SDJN02_15476, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.4 bits (446), Expect = 1.4e-40
Identity = 90/112 (80.36%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
           MA+KS S N KLQS+G SRKCLCSPTTHPGSFRCS HRNRRK SARSSSSSI AIT+AQL
Sbjct: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60

Query: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           +LT+ AKANA+R+FL  II PSS DLQRRRNF P+PSRFCLMN HGTGLAVS
Sbjct: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS 112

[Close]

BLAST of Carg09959 vs. ExPASy TrEMBL
Match: A0A6J1E1K3 (uncharacterized protein LOC111429944 OS=Cucurbita moschata OX=3662 GN=LOC111429944 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 7.6e-53
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
           MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL
Sbjct: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60

Query: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS
Sbjct: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 112

[Close]

BLAST of Carg09959 vs. ExPASy TrEMBL
Match: A0A6J1KSU0 (uncharacterized protein LOC111497277 OS=Cucurbita maxima OX=3661 GN=LOC111497277 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.9e-41
Identity = 90/112 (80.36%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
           MA+KS S+N KLQS+G SRKCLCSPTTHPGSFRCS HRNRRK SARSSSSSI+AIT+AQL
Sbjct: 1   MATKSRSANSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSISAITSAQL 60

Query: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           +LT+ AKANA+R+FL  II PSS DLQRRRNF P+PSRFCLMN HGTGLAVS
Sbjct: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFLPRPSRFCLMNKHGTGLAVS 112

[Close]

BLAST of Carg09959 vs. ExPASy TrEMBL
Match: A0A6J1EG01 (uncharacterized protein LOC111433980 OS=Cucurbita moschata OX=3662 GN=LOC111433980 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.6e-41
Identity = 90/112 (80.36%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQL 60
           MA+KS S N KLQS+G SRKCLCSPTTHPGSFRCS HRNRRK SARSSSSSI AIT+AQL
Sbjct: 1   MATKSRSVNSKLQSVGSSRKCLCSPTTHPGSFRCSFHRNRRKASARSSSSSITAITSAQL 60

Query: 61  KLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           +LT+ AKANA+R+FL  II PSS DLQRRRNF P+PSRFCLMN HGTGLAVS
Sbjct: 61  ELTVFAKANAVRAFLLHIIRPSSNDLQRRRNFHPRPSRFCLMNKHGTGLAVS 112

[Close]

BLAST of Carg09959 vs. ExPASy TrEMBL
Match: A0A0A0LYY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264520 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.2e-35
Identity = 85/113 (75.22%), Postives = 94/113 (83.19%), Query Frame = 0


Query: 1   MASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRNRRKV-SARSSSSSIAAITTAQ 60
           MASKSGSS  K  + G SRKCLCSPTTHPGSFRCS HRNR K+ S+RSSSSS++ ITTA 
Sbjct: 1   MASKSGSSTHKFPTNGASRKCLCSPTTHPGSFRCSFHRNRHKISSSRSSSSSLSLITTAD 60

Query: 61  LKLTMLAKANALRSFLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           L+   LAKANALRSFL Q+I PSS DLQRRRNF P+PSRFCLMN+H TGLAVS
Sbjct: 61  LE---LAKANALRSFLLQMIKPSSNDLQRRRNFHPRPSRFCLMNDHATGLAVS 110

[Close]

BLAST of Carg09959 vs. ExPASy TrEMBL
Match: A0A6J1BZD6 (uncharacterized protein LOC111006991 OS=Momordica charantia OX=3673 GN=LOC111006991 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.8e-33
Identity = 77/99 (77.78%), Postives = 83/99 (83.84%), Query Frame = 0


Query: 14  SIGGSRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQLKLTMLAKANALRS 73
           S    R+CLCSPT HPGSFRCS HRNRRKV + +SSSSIAAI+TAQL L MLAKANALR+
Sbjct: 5   SAPSKRRCLCSPTNHPGSFRCSFHRNRRKVVSATSSSSIAAISTAQLDLAMLAKANALRA 64

Query: 74  FLQQIINPSSKDLQRRRNFRPKPSRFCLMNNHGTGLAVS 113
           FL QII PS  D QRRRNF P+PSRFCLMNNHGTGLAVS
Sbjct: 65  FLLQIIKPSGNDPQRRRNFNPRPSRFCLMNNHGTGLAVS 103

[Close]

BLAST of Carg09959 vs. TAIR 10
Match: AT5G11090.1 (serine-rich protein-related )

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-11
Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 18  SRKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQLKLTMLAKANAL------ 77
           SR+C+CSPTTHPGSFRCS+H+N     A       A+ TT  L +   A  N+L      
Sbjct: 120 SRRCMCSPTTHPGSFRCSLHKN----VANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGV 179

Query: 78  -----RSFLQQIINPSSKDLQRRRNFRPKPSRFCLM 103
                R  L  +I PSS  L+RR  ++P+PSR  +M
Sbjct: 180 EGEWVRRALTTLIRPSSHHLKRRAAYQPRPSRLSIM 211

[Close]

BLAST of Carg09959 vs. TAIR 10
Match: AT5G25280.1 (serine-rich protein-related )

HSP 1 Score: 61.2 bits (147), Expect = 6.0e-10
Identity = 38/96 (39.58%), Postives = 50/96 (52.08%), Query Frame = 0


Query: 19  RKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQLKLTMLAKANAL------- 78
           R+C+CSPTTHPGSFRCS+H+N     A       A+ TT  L +   A  N+L       
Sbjct: 124 RRCMCSPTTHPGSFRCSLHKN----VANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVE 183

Query: 79  ----RSFLQQIINPSSKDLQRRRNFRPKPSRFCLMN 104
               R  L  +I PSS  L+RR  + P+ SR   M+
Sbjct: 184 GEWVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMS 215

[Close]

BLAST of Carg09959 vs. TAIR 10
Match: AT5G25280.2 (serine-rich protein-related )

HSP 1 Score: 61.2 bits (147), Expect = 6.0e-10
Identity = 38/96 (39.58%), Postives = 50/96 (52.08%), Query Frame = 0


Query: 19  RKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSIAAITTAQLKLTMLAKANAL------- 78
           R+C+CSPTTHPGSFRCS+H+N     A       A+ TT  L +   A  N+L       
Sbjct: 124 RRCMCSPTTHPGSFRCSLHKN----VANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVE 183

Query: 79  ----RSFLQQIINPSSKDLQRRRNFRPKPSRFCLMN 104
               R  L  +I PSS  L+RR  + P+ SR   M+
Sbjct: 184 GEWVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMS 215

[Close]

BLAST of Carg09959 vs. TAIR 10
Match: AT5G20370.1 (serine-rich protein-related )

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-08
Identity = 40/102 (39.22%), Postives = 47/102 (46.08%), Query Frame = 0


Query: 19  RKCLCSPTTHPGSFRCSIHRNRRKVSARSSSSSI---------AAITTAQLKLTMLAKAN 78
           RKCLCSPTTHPGSFRCS HR      +++ +SS                 L L  LA  N
Sbjct: 69  RKCLCSPTTHPGSFRCSFHRRLEHEKSKTLASSTVKRNNRGDNTIRVNVGLNLRKLALMN 128

Query: 79  AL------------RSFLQQIINPSSKDLQRRRNFRPKPSRF 100
           +L            RS    +  PSS    RR  FRP+ SRF
Sbjct: 129 SLAKIGSVEAERFRRSLAANLAKPSSLHSHRRPEFRPRLSRF 170

[Close]

BLAST of Carg09959 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.7e-04
Identity = 21/38 (55.26%), Postives = 24/38 (63.16%), Query Frame = 0


Query: 2  ASKSGSSNPKLQSIGGSRKCLCSPTTHPGSFRCSIHRN 40
          A + GS     Q+      CLCSPTTHPGSFRC IHR+
Sbjct: 25 AVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRS 62

The following BLAST results are available for this feature:

BLAST of Carg09959 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921799.1	1.6e-52	100.00	uncharacterized protein LOC111429944 [Cucurbita moschata] >KAG7023478.1 hypothet...	[more]
XP_023515429.1	1.0e-51	99.11	uncharacterized protein LOC111779591 [Cucurbita pepo subsp. pepo]	[more]
KAG6589806.1	3.0e-43	100.00	hypothetical protein SDJN03_15229, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023003805.1	8.0e-41	80.36	uncharacterized protein LOC111497277 [Cucurbita maxima]	[more]
XP_022927032.1	1.4e-40	80.36	uncharacterized protein LOC111433980 [Cucurbita moschata] >KAG7021749.1 hypothet...	[more]

BLAST of Carg09959 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg09959 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E1K3	7.6e-53	100.00	uncharacterized protein LOC111429944 OS=Cucurbita moschata OX=3662 GN=LOC1114299...	[more]
A0A6J1KSU0	3.9e-41	80.36	uncharacterized protein LOC111497277 OS=Cucurbita maxima OX=3661 GN=LOC111497277...	[more]
A0A6J1EG01	6.6e-41	80.36	uncharacterized protein LOC111433980 OS=Cucurbita moschata OX=3662 GN=LOC1114339...	[more]
A0A0A0LYY6	3.2e-35	75.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G264520 PE=4 SV=1	[more]
A0A6J1BZD6	1.8e-33	77.78	uncharacterized protein LOC111006991 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]

BLAST of Carg09959 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11090.1	1.4e-11	41.67	serine-rich protein-related	[more]
AT5G25280.1	6.0e-10	39.58	serine-rich protein-related	[more]
AT5G25280.2	6.0e-10	39.58	serine-rich protein-related	[more]
AT5G20370.1	1.9e-08	39.22	serine-rich protein-related	[more]
AT1G67910.1	1.7e-04	55.26	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR33132:SF63	SUBFAMILY NOT NAMED	coord: 13..106
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 13..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09959-RA	Carg09959-RA	mRNA