Carg09951 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09951
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RING-type domain-containing protein
Location	Carg_Chr10: 2372332 .. 2373469 (+)
RNA-Seq Expression	Carg09951
Synteny	Carg09951

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGTACGTATGTTGCAGGTATAGTGCCATTTTCCAATCAAATGGATGTGCGGTCAGAAGAGGTTTGTACTCTTTTGTTTTCTTCAGTGAACAGGCAAAAGAATACTTCAATCCTTTCCATTTCTAGGGAAAGCATTTAAGCTAAGTCTTTTCCTTTTACTGAACCACAATCTATTAAACTTATGTTGCATTAAACCAGCAGGATCGGAGTCTCGCCCGTCCAATATTCATGAAACGTTCACGTCATCAGTATAGTCATCAATATTGTCGACGAGGTTCAACCAGTCAAGCAAATGCATCCACCTCCCGCGAAAACCGAGTTCGAACCATACTCGAAAAACGTCCCGCTTTTAAATTTGCAGCTCACTGCAACTCAGAGTTTCCAGATCATATAGGTACCCTTTTTGAGTTTTGGGAATCAGAGTACTTTTCACAATGGCATAAATGTTATAAGATATTTGAAAATCCGTTCTTCGTGTATTACGTGGCGCTCTCTAATTAGACGAAAAGACCTGAAAACATAAACAGTTCTTGTGGTTAGCTGACAAGGCACCTTGTGTGATGTCCCACATTAGTTGGAGAGAAGAACAAACTACCTTTTATAAGAGTGTGGAAACCTCCCCTAGCAAACGCGTTTTAAAGCCTTGAGGGGAGCCCATAAGGAAAAGCCCAAAAAGGATAATATCGGCTAGCGGTGGAATTGGGTTCTTACACCTTGCTTTGAATTAGATATCATGTTCTTTGTGACATCAATATAATGGATATCAGTGGCCTTCGCTTCTTCTACATTGATGATGTTGTTCTCCTTTTACCTTGATTTCAGAGAGCAATGAGAGCACCTTCTTGAGGCCAGAAAGGATAAGGTACAATTCCTTAGGGAAGGATACAATTTCATCTCATGGAAGGAAAATAGTATGTGGGATTTGTCAAAAGCTGATGAGACGAAAGCTTTGCTTCCTCGGTAACACGTTGTCTTCCAGCGAACTTCCCGTTGCTGCGGTTTTGGTATGTGGCCATGTCTATCATGCAGACTGTCTGGAGAACGGGTCAAACGTCGAAGATAGAAGCGATCCCCGTTGTCCATTGTGCATGGAACCGCCTGCAAAAGTCGACGATTCAACCGAGCAGGAATGA

mRNA sequence

ATGTTTGGTACGTATGTTGCAGGTATAGTGCCATTTTCCAATCAAATGGATGTGCGGTCAGAAGAGGATCGGAGTCTCGCCCGTCCAATATTCATGAAACGTTCACGTCATCAGTATAGTCATCAATATTGTCGACGAGGTTCAACCAGTCAAGCAAATGCATCCACCTCCCGCGAAAACCGAGTTCGAACCATACTCGAAAAACGTCCCGCTTTTAAATTTGCAGCTCACTGCAACTCAGAGTTTCCAGATCATATAGAGAGCAATGAGAGCACCTTCTTGAGGCCAGAAAGGATAAGGTACAATTCCTTAGGGAAGGATACAATTTCATCTCATGGAAGGAAAATAGTATGTGGGATTTGTCAAAAGCTGATGAGACGAAAGCTTTGCTTCCTCGGTAACACGTTGTCTTCCAGCGAACTTCCCGTTGCTGCGGTTTTGGTATGTGGCCATGTCTATCATGCAGACTGTCTGGAGAACGGGTCAAACGTCGAAGATAGAAGCGATCCCCGTTGTCCATTGTGCATGGAACCGCCTGCAAAAGTCGACGATTCAACCGAGCAGGAATGA

Coding sequence (CDS)

ATGTTTGGTACGTATGTTGCAGGTATAGTGCCATTTTCCAATCAAATGGATGTGCGGTCAGAAGAGGATCGGAGTCTCGCCCGTCCAATATTCATGAAACGTTCACGTCATCAGTATAGTCATCAATATTGTCGACGAGGTTCAACCAGTCAAGCAAATGCATCCACCTCCCGCGAAAACCGAGTTCGAACCATACTCGAAAAACGTCCCGCTTTTAAATTTGCAGCTCACTGCAACTCAGAGTTTCCAGATCATATAGAGAGCAATGAGAGCACCTTCTTGAGGCCAGAAAGGATAAGGTACAATTCCTTAGGGAAGGATACAATTTCATCTCATGGAAGGAAAATAGTATGTGGGATTTGTCAAAAGCTGATGAGACGAAAGCTTTGCTTCCTCGGTAACACGTTGTCTTCCAGCGAACTTCCCGTTGCTGCGGTTTTGGTATGTGGCCATGTCTATCATGCAGACTGTCTGGAGAACGGGTCAAACGTCGAAGATAGAAGCGATCCCCGTTGTCCATTGTGCATGGAACCGCCTGCAAAAGTCGACGATTCAACCGAGCAGGAATGA

Protein sequence

MFGTYVAGIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLCMEPPAKVDDSTEQE

Homology

[Close]

BLAST of Carg09951 vs. NCBI nr
Match: KAG7023486.1 (hypothetical protein SDJN02_14511, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 389.4 bits (999), Expect = 1.7e-104
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MFGTYVAGIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTSQANASTSREN 60
           MFGTYVAGIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTSQANASTSREN
Sbjct: 1   MFGTYVAGIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTSQANASTSREN 60

Query: 61  RVRTILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGI 120
           RVRTILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGI
Sbjct: 61  RVRTILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGI 120

Query: 121 CQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLCMEPPA 180
           CQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLCMEPPA
Sbjct: 121 CQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLCMEPPA 180

Query: 181 KVDDSTEQE 190
           KVDDSTEQE
Sbjct: 181 KVDDSTEQE 189

[Close]

BLAST of Carg09951 vs. NCBI nr
Match: KAG6589815.1 (hypothetical protein SDJN03_15238, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 376.7 bits (966), Expect = 1.2e-100
Identity = 182/185 (98.38%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 5   YVAGIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 64
           +++GIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT
Sbjct: 24  HLSGIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 83

Query: 65  ILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGICQKL 124
           ILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGICQKL
Sbjct: 84  ILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGICQKL 143

Query: 125 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLCMEPPAKVDD 184
           MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLCMEPPAKVDD
Sbjct: 144 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLCMEPPAKVDD 203

Query: 185 STEQE 190
           STEQE
Sbjct: 204 STEQE 208

[Close]

BLAST of Carg09951 vs. NCBI nr
Match: XP_022961020.1 (uncharacterized protein LOC111461650 isoform X2 [Cucurbita moschata])

HSP 1 Score: 372.5 bits (955), Expect = 2.2e-99
Identity = 179/185 (96.76%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 5   YVAGIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 64
           +++GIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTS+ANASTSRENRVRT
Sbjct: 24  HLSGIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTSEANASTSRENRVRT 83

Query: 65  ILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGICQKL 124
           ILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGICQKL
Sbjct: 84  ILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGICQKL 143

Query: 125 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLCMEPPAKVDD 184
           MRRKLCFLGNTLSSSELP+AAVLVCGHVYHADCLENGSNVEDRSDP CPLCMEPPAKVDD
Sbjct: 144 MRRKLCFLGNTLSSSELPIAAVLVCGHVYHADCLENGSNVEDRSDPGCPLCMEPPAKVDD 203

Query: 185 STEQE 190
           STEQE
Sbjct: 204 STEQE 208

[Close]

BLAST of Carg09951 vs. NCBI nr
Match: XP_023516462.1 (uncharacterized protein LOC111780320 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 370.5 bits (950), Expect = 8.4e-99
Identity = 179/185 (96.76%), Postives = 183/185 (98.92%), Query Frame = 0


Query: 5   YVAGIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 64
           +++GIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT
Sbjct: 24  HLSGIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 83

Query: 65  ILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGICQKL 124
           ILEKRPAFKFAAHCNSEFP HIESNESTFLRPERIRYNSLGKDTI SHGRKIVCGICQKL
Sbjct: 84  ILEKRPAFKFAAHCNSEFPYHIESNESTFLRPERIRYNSLGKDTILSHGRKIVCGICQKL 143

Query: 125 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLCMEPPAKVDD 184
           MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSN+EDRSDPRCPLCMEPPAKVDD
Sbjct: 144 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNIEDRSDPRCPLCMEPPAKVDD 203

Query: 185 STEQE 190
           STEQE
Sbjct: 204 STEQE 208

[Close]

BLAST of Carg09951 vs. NCBI nr
Match: XP_022961019.1 (uncharacterized protein LOC111461650 isoform X1 [Cucurbita moschata])

HSP 1 Score: 367.9 bits (943), Expect = 5.4e-98
Identity = 179/186 (96.24%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 5   YVAGIVPFSNQMDVRSEE-DRSLARPIFMKRSRHQYSHQYCRRGSTSQANASTSRENRVR 64
           +++GIVPFSNQMDVRSEE DRSLARPIFMKRSRHQYSHQYCRRGSTS+ANASTSRENRVR
Sbjct: 24  HLSGIVPFSNQMDVRSEEQDRSLARPIFMKRSRHQYSHQYCRRGSTSEANASTSRENRVR 83

Query: 65  TILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGICQK 124
           TILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGICQK
Sbjct: 84  TILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGICQK 143

Query: 125 LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLCMEPPAKVD 184
           LMRRKLCFLGNTLSSSELP+AAVLVCGHVYHADCLENGSNVEDRSDP CPLCMEPPAKVD
Sbjct: 144 LMRRKLCFLGNTLSSSELPIAAVLVCGHVYHADCLENGSNVEDRSDPGCPLCMEPPAKVD 203

Query: 185 DSTEQE 190
           DSTEQE
Sbjct: 204 DSTEQE 209

[Close]

BLAST of Carg09951 vs. ExPASy TrEMBL
Match: A0A6J1HAS2 (uncharacterized protein LOC111461650 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461650 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.1e-99
Identity = 179/185 (96.76%), Postives = 184/185 (99.46%), Query Frame = 0


Query: 5   YVAGIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 64
           +++GIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTS+ANASTSRENRVRT
Sbjct: 24  HLSGIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTSEANASTSRENRVRT 83

Query: 65  ILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGICQKL 124
           ILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGICQKL
Sbjct: 84  ILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGICQKL 143

Query: 125 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLCMEPPAKVDD 184
           MRRKLCFLGNTLSSSELP+AAVLVCGHVYHADCLENGSNVEDRSDP CPLCMEPPAKVDD
Sbjct: 144 MRRKLCFLGNTLSSSELPIAAVLVCGHVYHADCLENGSNVEDRSDPGCPLCMEPPAKVDD 203

Query: 185 STEQE 190
           STEQE
Sbjct: 204 STEQE 208

[Close]

BLAST of Carg09951 vs. ExPASy TrEMBL
Match: A0A6J1HCS6 (uncharacterized protein LOC111461650 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461650 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 2.6e-98
Identity = 179/186 (96.24%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 5   YVAGIVPFSNQMDVRSEE-DRSLARPIFMKRSRHQYSHQYCRRGSTSQANASTSRENRVR 64
           +++GIVPFSNQMDVRSEE DRSLARPIFMKRSRHQYSHQYCRRGSTS+ANASTSRENRVR
Sbjct: 24  HLSGIVPFSNQMDVRSEEQDRSLARPIFMKRSRHQYSHQYCRRGSTSEANASTSRENRVR 83

Query: 65  TILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGICQK 124
           TILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGICQK
Sbjct: 84  TILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGICQK 143

Query: 125 LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLCMEPPAKVD 184
           LMRRKLCFLGNTLSSSELP+AAVLVCGHVYHADCLENGSNVEDRSDP CPLCMEPPAKVD
Sbjct: 144 LMRRKLCFLGNTLSSSELPIAAVLVCGHVYHADCLENGSNVEDRSDPGCPLCMEPPAKVD 203

Query: 185 DSTEQE 190
           DSTEQE
Sbjct: 204 DSTEQE 209

[Close]

BLAST of Carg09951 vs. ExPASy TrEMBL
Match: A0A6J1JKN5 (uncharacterized protein LOC111485281 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485281 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 3.8e-97
Identity = 176/185 (95.14%), Postives = 179/185 (96.76%), Query Frame = 0


Query: 5   YVAGIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 64
           +++GIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTSQ NASTSRENRVRT
Sbjct: 24  HLSGIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTSQENASTSRENRVRT 83

Query: 65  ILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGICQKL 124
           ILEKRP FKFAAHCNSEFPDHIESNE TFLRPERIRYNS GKDTISSHGRKIVCGICQKL
Sbjct: 84  ILEKRPTFKFAAHCNSEFPDHIESNERTFLRPERIRYNSSGKDTISSHGRKIVCGICQKL 143

Query: 125 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLCMEPPAKVDD 184
           MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLCMEPPAKVDD
Sbjct: 144 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLCMEPPAKVDD 203

Query: 185 STEQE 190
           S  QE
Sbjct: 204 SIGQE 208

[Close]

BLAST of Carg09951 vs. ExPASy TrEMBL
Match: A0A6J1JBJ7 (uncharacterized protein LOC111485281 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485281 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 9.3e-96
Identity = 176/186 (94.62%), Postives = 179/186 (96.24%), Query Frame = 0


Query: 5   YVAGIVPFSNQMDVRSEE-DRSLARPIFMKRSRHQYSHQYCRRGSTSQANASTSRENRVR 64
           +++GIVPFSNQMDVRSEE DRSLARPIFMKRSRHQYSHQYCRRGSTSQ NASTSRENRVR
Sbjct: 24  HLSGIVPFSNQMDVRSEEQDRSLARPIFMKRSRHQYSHQYCRRGSTSQENASTSRENRVR 83

Query: 65  TILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGICQK 124
           TILEKRP FKFAAHCNSEFPDHIESNE TFLRPERIRYNS GKDTISSHGRKIVCGICQK
Sbjct: 84  TILEKRPTFKFAAHCNSEFPDHIESNERTFLRPERIRYNSSGKDTISSHGRKIVCGICQK 143

Query: 125 LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLCMEPPAKVD 184
           LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLCMEPPAKVD
Sbjct: 144 LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLCMEPPAKVD 203

Query: 185 DSTEQE 190
           DS  QE
Sbjct: 204 DSIGQE 209

[Close]

BLAST of Carg09951 vs. ExPASy TrEMBL
Match: A0A6J1BZ68 (uncharacterized protein LOC111006826 OS=Momordica charantia OX=3673 GN=LOC111006826 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.2e-84
Identity = 153/181 (84.53%), Postives = 168/181 (92.82%), Query Frame = 0


Query: 5   YVAGIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 64
           +++G+VPFSNQMDV SEED+SLARP+FMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT
Sbjct: 19  HLSGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRT 78

Query: 65  ILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKIVCGICQKL 124
           +LE+RPAFKFAAHCNSEFP+HIES E+TF  PERIRY+SLGKD ISSHG +++CGICQKL
Sbjct: 79  VLEERPAFKFAAHCNSEFPNHIESIENTFWGPERIRYSSLGKDAISSHGVRMLCGICQKL 138

Query: 125 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLCMEPPAKVDD 184
           MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLE  S VEDRSDP CPLC EP  K+DD
Sbjct: 139 MRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVEDRSDPPCPLCTEPSTKIDD 198

Query: 185 S 186
           S
Sbjct: 199 S 199

[Close]

BLAST of Carg09951 vs. TAIR 10
Match: AT1G75400.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.2 bits (165), Expect = 8.3e-12
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 117 VCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLC 176
           VCG C KL+  +     +++++ ELP+AAVL CGHVYHA+CLE  +   ++ DP CP+C
Sbjct: 280 VCGACSKLLTER-----SSIATFELPIAAVLACGHVYHAECLETMTTDIEKYDPACPIC 333

[Close]

BLAST of Carg09951 vs. TAIR 10
Match: AT1G19680.1 (RING/U-box superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-10
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 118 CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLCME 177
           CG C KL+  +     + ++  +LP+ AVL CGHVYHA CLE  +N  ++ DP CP+C E
Sbjct: 273 CGRCSKLLTER-----SPVARFDLPIPAVLACGHVYHAACLETMTNETEKYDPTCPICTE 327

[Close]

BLAST of Carg09951 vs. TAIR 10
Match: AT4G39140.1 (RING/U-box superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 7.7e-10
Identity = 45/174 (25.86%), Postives = 75/174 (43.10%), Query Frame = 0


Query: 11  PFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTI--LEK 70
           P S+Q  +      +L      + S+     Q   + S S+++A+  R+         + 
Sbjct: 145 PLSSQSYLHPASSSTLKLTQHPRLSKQVSDGQIYGQNSLSRSSATEERQGTPTRYDSSQS 204

Query: 71  RPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKI------VCGICQ 130
            P+  ++    SE      SN++            L +D I  HG ++       CG C 
Sbjct: 205 GPSEGWSLQAFSEMMSSSRSNKALSYDNYDNDCFGLQRDKIDHHGNRMSKHQQHTCGACS 264

Query: 131 K-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLC 176
           + L  + L        ++EL V+A+L CGHVYH +CLE  +   D+ DP CP+C
Sbjct: 265 RPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGECLEQMTPEIDKFDPSCPIC 318

[Close]

BLAST of Carg09951 vs. TAIR 10
Match: AT4G39140.2 (RING/U-box superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 7.7e-10
Identity = 45/174 (25.86%), Postives = 75/174 (43.10%), Query Frame = 0


Query: 11  PFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTI--LEK 70
           P S+Q  +      +L      + S+     Q   + S S+++A+  R+         + 
Sbjct: 145 PLSSQSYLHPASSSTLKLTQHPRLSKQVSDGQIYGQNSLSRSSATEERQGTPTRYDSSQS 204

Query: 71  RPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKI------VCGICQ 130
            P+  ++    SE      SN++            L +D I  HG ++       CG C 
Sbjct: 205 GPSEGWSLQAFSEMMSSSRSNKALSYDNYDNDCFGLQRDKIDHHGNRMSKHQQHTCGACS 264

Query: 131 K-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLC 176
           + L  + L        ++EL V+A+L CGHVYH +CLE  +   D+ DP CP+C
Sbjct: 265 RPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGECLEQMTPEIDKFDPSCPIC 318

[Close]

BLAST of Carg09951 vs. TAIR 10
Match: AT4G39140.3 (RING/U-box superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 7.7e-10
Identity = 45/174 (25.86%), Postives = 75/174 (43.10%), Query Frame = 0


Query: 11  PFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRGSTSQANASTSRENRVRTI--LEK 70
           P S+Q  +      +L      + S+     Q   + S S+++A+  R+         + 
Sbjct: 145 PLSSQSYLHPASSSTLKLTQHPRLSKQVSDGQIYGQNSLSRSSATEERQGTPTRYDSSQS 204

Query: 71  RPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKDTISSHGRKI------VCGICQ 130
            P+  ++    SE      SN++            L +D I  HG ++       CG C 
Sbjct: 205 GPSEGWSLQAFSEMMSSSRSNKALSYDNYDNDCFGLQRDKIDHHGNRMSKHQQHTCGACS 264

Query: 131 K-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENGSNVEDRSDPRCPLC 176
           + L  + L        ++EL V+A+L CGHVYH +CLE  +   D+ DP CP+C
Sbjct: 265 RPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGECLEQMTPEIDKFDPSCPIC 318

The following BLAST results are available for this feature:

BLAST of Carg09951 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023486.1	1.7e-104	100.00	hypothetical protein SDJN02_14511, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6589815.1	1.2e-100	98.38	hypothetical protein SDJN03_15238, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022961020.1	2.2e-99	96.76	uncharacterized protein LOC111461650 isoform X2 [Cucurbita moschata]	[more]
XP_023516462.1	8.4e-99	96.76	uncharacterized protein LOC111780320 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022961019.1	5.4e-98	96.24	uncharacterized protein LOC111461650 isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg09951 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg09951 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HAS2	1.1e-99	96.76	uncharacterized protein LOC111461650 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HCS6	2.6e-98	96.24	uncharacterized protein LOC111461650 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JKN5	3.8e-97	95.14	uncharacterized protein LOC111485281 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JBJ7	9.3e-96	94.62	uncharacterized protein LOC111485281 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1BZ68	2.2e-84	84.53	uncharacterized protein LOC111006826 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]

BLAST of Carg09951 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75400.1	8.3e-12	47.46	RING/U-box superfamily protein	[more]
AT1G19680.1	1.2e-10	45.00	RING/U-box superfamily protein	[more]
AT4G39140.1	7.7e-10	25.86	RING/U-box superfamily protein	[more]
AT4G39140.2	7.7e-10	25.86	RING/U-box superfamily protein	[more]
AT4G39140.3	7.7e-10	25.86	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 118..175 e-value: 1.1E-4 score: 31.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 118..175 score: 10.261575
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 118..173 e-value: 1.9E-5 score: 24.6
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 114..180 e-value: 7.4E-8 score: 34.1
None	No IPR available	PANTHER	PTHR31150:SF6	CHROMATIN REGULATOR PHD FAMILY-RELATED	coord: 20..184
None	No IPR available	PANTHER	PTHR31150	EXPRESSED PROTEIN	coord: 20..184
None	No IPR available	CDD	cd16448	RING-H2	coord: 118..176 e-value: 1.43748E-4 score: 36.2759
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 117..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09951-RA	Carg09951-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding