Carg09930 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg09930
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr10: 2490546 .. 2492175 (-)
RNA-Seq ExpressionCarg09930
SyntenyCarg09930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCAGAGAAAGAGGATTTCATTGTGGCTGTATGATCTAGAAATCTTTATAGAGTTTATTCATATTTTTCCTTACTTGTATATAGCAGCTTTTGGATAACATGAACGATTCATGGGATTGAATGGGCATGAATTGGACAATATCTGACAGGTTTTTGTATTTGTTTTGCAGAAATGTAGGACTGTATAAGAAGGTATCTTATCTTTTGATGCGTGGACATTATAGAATAATGATTTCAATTAATTGTTTTTATAATATGCATGTGTGGTATGTTAACACGCTAGAAGGAAGTAGACAACTATAACACGCTAGAAGAAGGGCTTGAACCTCCGACCTTGTGGTTAACAGCCACACGCTCTAACTAACTGAGCTATTCCAGCATATTTACGCTCTAACCAACTGAGCTATTCTAGCATACTTTTTTTAAATTTTTTTTTTTTTGGTAAACTAAAATTATAAAAAAATAAATAAATGCATACTAATTTGCAATTGTTCTAATCATGTTGACAACAACTATAACACGCTAGAACGAGACTTGAACCTCCGACCTTGTGGTTAACAGCCACACACTCTAACAAACTGAGCTATTTCAGCACATTTTGTTAAAATAAATTTTTTTGGTAAACTAAAATTATAAAAAATAAAAAAAAAAATGTATACTAAATATTACTAATAAATTTGCTTAGGTTGGCACAACGAGCTTGAACCAACTGAGCTATTCCAGCTTATATAAACTGTTCCACAAGATTATACATGTTCTTTGAAGCATTAGCATAAGATTTAGGATGAGGAATTATTCTCCATCTCTATCTCACAAAAAACTTGTGATAAACAATGAAGAAGTACAGGCCATTTTCATTCTATCGCTCTCTCTGCCAAACTAATGCAAAATTCAGTACACTAAACAATGGATCATCTACCATATTATCACTCGCTCTGGCTAACACTTTCAAACATTTCTGTTAGCAATTTGTGTCTTAACCTATCCTTTCTGGTACCTTTGCAAAATAAAGAGCCTGCAGTGCTAGCTAGATATTCACATAGTCTAGCAAAGCGGAATTGTACCGAAAACAAGCTAGACAAGATTAGAAACGGACGAACTACTGATCGAGGCCTCTATGGTTGCCTATTCAGCCCTGGGATGCTGTTTGCAGAGGTTCTTACACAGCCTCCAGGAAGAAGGAATCTGAACTTGTCTGCATTCTCTATCAAGTATGCAGGAAGGTGAACGGCCGATGAAGAACGCGGTATAGAGCCCATCTTCTTAATCAGCTCCTGGAAGGTGTACTCTTCGGGAAGCATGTCGAAGAGATCATCTCCCTGGCAAATGAGTTTCTGTATCCTGGCGTAATTCAAGAAGTCCCGCCGCCTTACACGGTCTGCATGACTATAAGCTGTCATCTTGAATGCAAAGTCTTGAATATTCCTAAAGCAAAAGCTACAATGCCATCCTGCATCAGAGAATATAAGATTGGTTTGGCGGGAATGCCTATAGTGAGTATATGGGCCATAGATATGAACCGAGGCTCGCCAACTGCTGTAGTCCACCGGGAACTCGAAAGAATACATGTAGTTCCTCATTTCAAGATGGACTATCGAAGGCACCTCATCACACCATTGCAGTAG

mRNA sequence

ATGGCTGCAGAGAAAGAGGATTTCATTGTGGCTCTCCTGGAAGGTGTACTCTTCGGGAAGCATGTCGAAGAGATCATCTCCCTGGCAAATGAGTTTCTGTATCCTGGCGTAATTCAAGAAGTCCCGCCGCCTTACACGGTCTGCATGACTATAAGCTGTCATCTTGAATGCAAAGTCTTGAATATTCCTAAAGCAAAAGCTACAATGCCATCCTGCATCAGAGAATATAAGATTGGTTTGGCGGGAATGCCTATAGTGAGTATATGGGCCATAGATATGAACCGAGGCTCGCCAACTGCTGTAGTCCACCGGGAACTCGAAAGAATACATGTAGTTCCTCATTTCAAGATGGACTATCGAAGGCACCTCATCACACCATTGCAGTAG

Coding sequence (CDS)

ATGGCTGCAGAGAAAGAGGATTTCATTGTGGCTCTCCTGGAAGGTGTACTCTTCGGGAAGCATGTCGAAGAGATCATCTCCCTGGCAAATGAGTTTCTGTATCCTGGCGTAATTCAAGAAGTCCCGCCGCCTTACACGGTCTGCATGACTATAAGCTGTCATCTTGAATGCAAAGTCTTGAATATTCCTAAAGCAAAAGCTACAATGCCATCCTGCATCAGAGAATATAAGATTGGTTTGGCGGGAATGCCTATAGTGAGTATATGGGCCATAGATATGAACCGAGGCTCGCCAACTGCTGTAGTCCACCGGGAACTCGAAAGAATACATGTAGTTCCTCATTTCAAGATGGACTATCGAAGGCACCTCATCACACCATTGCAGTAG

Protein sequence

MAAEKEDFIVALLEGVLFGKHVEEIISLANEFLYPGVIQEVPPPYTVCMTISCHLECKVLNIPKAKATMPSCIREYKIGLAGMPIVSIWAIDMNRGSPTAVVHRELERIHVVPHFKMDYRRHLITPLQ
Homology
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BLAST of Carg09930 vs. NCBI nr
Match: KAG7023506.1 (hypothetical protein SDJN02_14532, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 264.6 bits (675), Expect = 4.4e-67
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0 

Query: 1   MAAEKEDFIVALLEGVLFGKHVEEIISLANEFLYPGVIQEVPPPYTVCMTISCHLECKVL 60
           MAAEKEDFIVALLEGVLFGKHVEEIISLANEFLYPGVIQEVPPPYTVCMTISCHLECKVL
Sbjct: 1   MAAEKEDFIVALLEGVLFGKHVEEIISLANEFLYPGVIQEVPPPYTVCMTISCHLECKVL 60

Query: 61  NIPKAKATMPSCIREYKIGLAGMPIVSIWAIDMNRGSPTAVVHRELERIHVVPHFKMDYR 120
           NIPKAKATMPSCIREYKIGLAGMPIVSIWAIDMNRGSPTAVVHRELERIHVVPHFKMDYR
Sbjct: 61  NIPKAKATMPSCIREYKIGLAGMPIVSIWAIDMNRGSPTAVVHRELERIHVVPHFKMDYR 120

Query: 121 RHLITPLQ 129
           RHLITPLQ
Sbjct: 121 RHLITPLQ 128

The following BLAST results are available for this feature:
BLAST of Carg09930 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7023506.14.4e-67100.00hypothetical protein SDJN02_14532, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg09930 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09930 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09930 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09930-RACarg09930-RAmRNA