Carg09916 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09916
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ribosomal protein
Location	Carg_Chr10: 2554653 .. 2556370 (-)
RNA-Seq Expression	Carg09916
Synteny	Carg09916

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGTACGTGCTTCAGTGAAGAAGATGTGCGAGTTTTGTAGGACAGTGAAGCGTCGAGGTCGAGTGTATGTATACTGCTCATCCAATCCCAAACACAAGCAACGCCAAGGCCTATCAACATCTGCTAGTGAAGGACCTTCTCCCCACCTGTGAGTACTTCCCCATTGTCAGTTCTTAGTCTTTGAATGCATATTTCATTCGTTTATCTGTTAAGATGGAAAAGTTTGAAGAATTATGCCTTTTGCCATTGAAGAGAGTTGTTGCATAACTCAAGATAAGGATTGACGATTTATTACATAGGGGGCATTGCATGAATGTGTTAGGGACACATACCTCCGTAATGGTATGATATTACCCATTTTGAGTATAAACTCTCATTGTATTACTTTTGGTTTTCCCAAAATGTCTCATACCAATGGAGATGTATTCCTTACTTATAAACTCACGATCATCCTCTTAATTAATCAATGTGGGACTCCCTCGAACAAAATACACCATAGAGCCTCTTTTGAGGCCTACGAAGCCCTCAAATAACTTCTCCTTAATTGAGGTTCGACTTCTTCTCTAGAGCCCTTGACCAAAATACACCCTTTGTTCGACACTTGAGTTACTTTTGACTACACATTTGAGGCTCACAACTTTTTTGTTCGACACTCGAGGATTTTGTTGAAATGACTAAGTTAAGGGTATGACTTTGATACCATGTTAGGAACCACAAACCTCTACAATGGTATAATATTGCCTACTTTGAGCATAAGGTCTCATGCCAATAGAAATATATTTTTTACTTATAAACCCATGATCATTCTCTTAATTAGCAAATGTGAGACTCCCTCCCAACCATCGTCAACAGAAGAATGGAGTTATGCACTTGTGTAAAACAAAAATGGACATAACTCATGCATCAAATTGTAGAACTTTTGCTATTTCTTGAGTGCCAAAAAGTATGTTATTTTTTATTTTCGTATAAAGATGATGTTGAGGCCAGATTCCTTAAATTTATCACTTGCAAGTCTTCTTCCAGTTTCATTCTCTACCATGCAGCTAGAGATTAGTTTTGGGGATTGTTGGAAGTCATTTTTTCATTCCTCATTATTAATATGTTCAGTTCTCTTCTTATTAACACATCCATATGTAGGATGATGGTATTCAGGTTTTTACTTGGGACTAATCACATGATTCTTGTAGCTAATTGCATCAAACGTGACCCGCTTTTTCAGGTTCCCAAGTAGTGAGGTGAAGCAAGAGATTCTTCCCAGTCATAGCTCACGAACAGGTCTGGCTTCTCTCCTTCCCCAAAAGCATGAGCCAACAATGTTGATTGGTTGGAGAATGGGTCTAGCTTCAATCCTGTTGAAGAAACACAATTAGCTGAAGTCCACGATTACAAACATCTCGATTTCTGCGAGCCACGAAAATTTCTACAATTTGATTCTGCTCCTTCTAACAAGAAAAAAGCTCTGCTGCTCTGAGTTTTGTTCTGTTTGAGTTGGTTCTGATATTTAGAATGGCAGGACGAGCTGTTACATTGAGCCGGCGATCATTTTCATTTTCAGCTTCTGAAAAGTGGCGGCAGAACTGAACTGCGCCCTGTATTATGTTGGAGATTAGAACATGACTTGCAATCCTTAATTTCCTTCTAAATAATCCTCAAATCCATCAACATATGATGAATCAAGTTGTATGCTAACAAGTTCAAGAAAAGTTTGAATTCT

mRNA sequence

ATGAAAGTACGTGCTTCAGTGAAGAAGATGTGCGAGTTTTGTAGGACAGTGAAGCGTCGAGGTCGAGTGTATGTATACTGCTCATCCAATCCCAAACACAAGCAACGCCAAGGCCTATCAACATCTGCTAGTGAAGGACCTTCTCCCCACCTGTTCCCAAGTAGTGAGGTGAAGCAAGAGATTCTTCCCAGTCATAGCTCACGAACAGGTCTGGCTTCTCTCCTTCCCCAAAAGCATGAGCCAACAATGTTGATTGGTTGGAGAATGGGTCTAGCTTCAATCCTGTTGAAGAAACACAATTAGCTGAAGTCCACGATTACAAACATCTCGATTTCTGCGAGCCACGAAAATTTCTACAATTTGATTCTGCTCCTTCTAACAAGAAAAAAGCTCTGCTGCTCTGAGTTTTGTTCTGTTTGAGTTGGTTCTGATATTTAGAATGGCAGGACGAGCTGTTACATTGAGCCGGCGATCATTTTCATTTTCAGCTTCTGAAAAGTGGCGGCAGAACTGAACTGCGCCCTGTATTATGTTGGAGATTAGAACATGACTTGCAATCCTTAATTTCCTTCTAAATAATCCTCAAATCCATCAACATATGATGAATCAAGTTGTATGCTAACAAGTTCAAGAAAAGTTTGAATTCT

Coding sequence (CDS)

ATGAAAGTACGTGCTTCAGTGAAGAAGATGTGCGAGTTTTGTAGGACAGTGAAGCGTCGAGGTCGAGTGTATGTATACTGCTCATCCAATCCCAAACACAAGCAACGCCAAGGCCTATCAACATCTGCTAGTGAAGGACCTTCTCCCCACCTGTTCCCAAGTAGTGAGGTGAAGCAAGAGATTCTTCCCAGTCATAGCTCACGAACAGGTCTGGCTTCTCTCCTTCCCCAAAAGCATGAGCCAACAATGTTGATTGGTTGGAGAATGGGTCTAGCTTCAATCCTGTTGAAGAAACACAATTAG

Protein sequence

MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQEILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN

Homology

[Close]

BLAST of Carg09916 vs. NCBI nr
Match: KAG7023520.1 (rpmJ, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 202.6 bits (514), Expect = 1.6e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60
           MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60

Query: 61  ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN 101
           ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN
Sbjct: 61  ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN 100

[Close]

BLAST of Carg09916 vs. NCBI nr
Match: XP_022987917.1 (uncharacterized protein LOC111485318 [Cucurbita maxima])

HSP 1 Score: 201.1 bits (510), Expect = 4.6e-48
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60
           MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60

Query: 61  ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN 101
           ILPSHSSRTGLASLLPQKHEPTML GWRMGLASILLKKHN
Sbjct: 61  ILPSHSSRTGLASLLPQKHEPTMLFGWRMGLASILLKKHN 100

[Close]

BLAST of Carg09916 vs. NCBI nr
Match: XP_022960589.1 (uncharacterized protein LOC111461324 [Cucurbita moschata])

HSP 1 Score: 199.5 bits (506), Expect = 1.4e-47
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60
           MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASE PSPHLFPSSEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQE 60

Query: 61  ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN 101
           ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN
Sbjct: 61  ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN 100

[Close]

BLAST of Carg09916 vs. NCBI nr
Match: XP_038879717.1 (uncharacterized protein LOC120071478 [Benincasa hispida])

HSP 1 Score: 184.5 bits (467), Expect = 4.5e-43
Identity = 91/100 (91.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60
           MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLST ASEGP P LF  SEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPPPSLFSRSEVKQE 60

Query: 61  ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN 101
           +LPSHSSRTGLASL+PQKHEPTML+GWRMGLASILLKK N
Sbjct: 61  LLPSHSSRTGLASLIPQKHEPTMLLGWRMGLASILLKKRN 100

[Close]

BLAST of Carg09916 vs. NCBI nr
Match: XP_022144930.1 (uncharacterized protein LOC111014487 [Momordica charantia])

HSP 1 Score: 180.6 bits (457), Expect = 6.5e-42
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60
           MKVR+SVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLST ASEGPSP LF  SEVKQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPPLFSRSEVKQE 60

Query: 61  ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN 101
           ILPS+S RTGLASL+PQKHEPT + GWRMGLASILLKKHN
Sbjct: 61  ILPSYSPRTGLASLIPQKHEPTTMFGWRMGLASILLKKHN 100

[Close]

BLAST of Carg09916 vs. ExPASy Swiss-Prot
Match: P73300 (50S ribosomal protein L36 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-10
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 1  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG 39
          MKVRASVKKMC+ CR ++RRGRV V CS+NPKHKQRQG
Sbjct: 1  MKVRASVKKMCDKCRVIRRRGRVMVICSANPKHKQRQG 38

[Close]

BLAST of Carg09916 vs. ExPASy Swiss-Prot
Match: A5VLI2 (50S ribosomal protein L36 OS=Lactobacillus reuteri (strain DSM 20016) OX=557436 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.9e-10
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 1  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG 39
          MKVR SVKKMCE C+ VKR GRV V CS+NPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQG 38

[Close]

BLAST of Carg09916 vs. ExPASy Swiss-Prot
Match: B2G8V5 (50S ribosomal protein L36 OS=Lactobacillus reuteri (strain JCM 1112) OX=557433 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.9e-10
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 1  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG 39
          MKVR SVKKMCE C+ VKR GRV V CS+NPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQG 38

[Close]

BLAST of Carg09916 vs. ExPASy Swiss-Prot
Match: B3WAJ5 (50S ribosomal protein L36 OS=Lactobacillus casei (strain BL23) OX=543734 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-09
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG 39
          MKVR SVKKMCE C+ V+R+GRV + CS+NPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38

[Close]

BLAST of Carg09916 vs. ExPASy Swiss-Prot
Match: Q035A6 (50S ribosomal protein L36 OS=Lactobacillus paracasei (strain ATCC 334 / BCRC 17002 / CIP 107868 / KCTC 3260 / NRRL B-441) OX=321967 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-09
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG 39
          MKVR SVKKMCE C+ V+R+GRV + CS+NPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38

[Close]

BLAST of Carg09916 vs. ExPASy TrEMBL
Match: A0A6J1JBN8 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111485318 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.2e-48
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60
           MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60

Query: 61  ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN 101
           ILPSHSSRTGLASLLPQKHEPTML GWRMGLASILLKKHN
Sbjct: 61  ILPSHSSRTGLASLLPQKHEPTMLFGWRMGLASILLKKHN 100

[Close]

BLAST of Carg09916 vs. ExPASy TrEMBL
Match: A0A6J1HBF8 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111461324 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.5e-48
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60
           MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASE PSPHLFPSSEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEKPSPHLFPSSEVKQE 60

Query: 61  ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN 101
           ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN
Sbjct: 61  ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN 100

[Close]

BLAST of Carg09916 vs. ExPASy TrEMBL
Match: A0A6J1CT08 (Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111014487 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.1e-42
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60
           MKVR+SVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLST ASEGPSP LF  SEVKQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPPLFSRSEVKQE 60

Query: 61  ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN 101
           ILPS+S RTGLASL+PQKHEPT + GWRMGLASILLKKHN
Sbjct: 61  ILPSYSPRTGLASLIPQKHEPTTMFGWRMGLASILLKKHN 100

[Close]

BLAST of Carg09916 vs. ExPASy TrEMBL
Match: A0A6J1EZS5 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111440855 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 9.1e-42
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60
           MKVRASVKKMCEFCRTV+RRGRVY+YCS+NPKHKQRQGLST ASE PSP LF  SEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60

Query: 61  ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN 101
           ILPSHSSRTGLASL+PQKHEPTML GWRMGLASIL KK N
Sbjct: 61  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]

BLAST of Carg09916 vs. ExPASy TrEMBL
Match: A0A6J1I4R0 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111470644 PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.7e-41
Identity = 87/100 (87.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEGPSPHLFPSSEVKQE 60
           MKVRASVKKMCEFCRTV+RRGRVY+YCSSNPKHKQRQGLST ASE PSP LF  SEVK++
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSSNPKHKQRQGLSTFASEAPSPSLFSRSEVKEK 60

Query: 61  ILPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN 101
           ILPSHSSRTGLASL+PQKHEPTML GWRMGLASIL KK N
Sbjct: 61  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]

BLAST of Carg09916 vs. TAIR 10
Match: AT5G20180.1 (Ribosomal protein L36 )

HSP 1 Score: 117.9 bits (294), Expect = 4.8e-27
Identity = 67/104 (64.42%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEG--PSPHLFPSSEVK 60
           MKVR+SVKKMCEFC+TVKRRGRVYV CSSNPKHKQRQG S+ A EG  PSP LF      
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSP-LFAEPIAS 60

Query: 61  QEI--LPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN 101
           QE+  LP      GLASLL ++  PT   GWR GLASIL K+ N
Sbjct: 61  QELVRLPGQGVSAGLASLLHKRPMPTAYFGWRSGLASILFKQGN 103

[Close]

BLAST of Carg09916 vs. TAIR 10
Match: AT5G20180.2 (Ribosomal protein L36 )

HSP 1 Score: 117.9 bits (294), Expect = 4.8e-27
Identity = 67/104 (64.42%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTSASEG--PSPHLFPSSEVK 60
           MKVR+SVKKMCEFC+TVKRRGRVYV CSSNPKHKQRQG S+ A EG  PSP LF      
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSP-LFAEPIAS 60

Query: 61  QEI--LPSHSSRTGLASLLPQKHEPTMLIGWRMGLASILLKKHN 101
           QE+  LP      GLASLL ++  PT   GWR GLASIL K+ N
Sbjct: 61  QELVRLPGQGVSAGLASLLHKRPMPTAYFGWRSGLASILFKQGN 103

[Close]

BLAST of Carg09916 vs. TAIR 10
Match: ATCG00760.1 (ribosomal protein L36 )

HSP 1 Score: 57.4 bits (137), Expect = 7.7e-09
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1  MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQG 39
          MK+RASV+K+CE CR ++RRGR+ V C SNP+HKQRQG
Sbjct: 1  MKIRASVRKICEKCRLIRRRGRIIVIC-SNPRHKQRQG 37

The following BLAST results are available for this feature:

BLAST of Carg09916 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023520.1	1.6e-48	100.00	rpmJ, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022987917.1	4.6e-48	99.00	uncharacterized protein LOC111485318 [Cucurbita maxima]	[more]
XP_022960589.1	1.4e-47	99.00	uncharacterized protein LOC111461324 [Cucurbita moschata]	[more]
XP_038879717.1	4.5e-43	91.00	uncharacterized protein LOC120071478 [Benincasa hispida]	[more]
XP_022144930.1	6.5e-42	89.00	uncharacterized protein LOC111014487 [Momordica charantia]	[more]

BLAST of Carg09916 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P73300	2.3e-10	78.95	50S ribosomal protein L36 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111...	[more]
A5VLI2	8.9e-10	78.95	50S ribosomal protein L36 OS=Lactobacillus reuteri (strain DSM 20016) OX=557436 ...	[more]
B2G8V5	8.9e-10	78.95	50S ribosomal protein L36 OS=Lactobacillus reuteri (strain JCM 1112) OX=557433 G...	[more]
B3WAJ5	1.2e-09	73.68	50S ribosomal protein L36 OS=Lactobacillus casei (strain BL23) OX=543734 GN=rpmJ...	[more]
Q035A6	1.2e-09	73.68	50S ribosomal protein L36 OS=Lactobacillus paracasei (strain ATCC 334 / BCRC 170...	[more]

BLAST of Carg09916 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JBN8	2.2e-48	99.00	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111485318 PE=3 SV=1	[more]
A0A6J1HBF8	6.5e-48	99.00	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111461324 PE=3 SV=1	[more]
A0A6J1CT08	3.1e-42	89.00	Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111014487 PE=3 SV=1	[more]
A0A6J1EZS5	9.1e-42	88.00	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111440855 PE=3 SV=1	[more]
A0A6J1I4R0	2.7e-41	87.00	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111470644 PE=3 SV=1	[more]

BLAST of Carg09916 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20180.1	4.8e-27	64.42	Ribosomal protein L36	[more]
AT5G20180.2	4.8e-27	64.42	Ribosomal protein L36	[more]
ATCG00760.1	7.7e-09	68.42	ribosomal protein L36	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000473	Ribosomal protein L36	PFAM	PF00444	Ribosomal_L36	coord: 1..38 e-value: 9.5E-22 score: 76.9
IPR000473	Ribosomal protein L36	TIGRFAM	TIGR01022	TIGR01022	coord: 1..38 e-value: 2.9E-18 score: 63.7
IPR000473	Ribosomal protein L36	PROSITE	PS00828	RIBOSOMAL_L36	coord: 11..37
IPR000473	Ribosomal protein L36	HAMAP	MF_00251	Ribosomal_L36	coord: 1..38 score: 18.611782
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..53
None	No IPR available	PANTHER	PTHR18804:SF16	RIBOSOMAL PROTEIN	coord: 1..99
None	No IPR available	PANTHER	PTHR18804	FAMILY NOT NAMED	coord: 1..99
IPR035977	Ribosomal protein L36 superfamily	SUPERFAMILY	57840	Ribosomal protein L36	coord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09916-RA	Carg09916-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome