Carg09889 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09889
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Plant/protein
Location	Carg_Chr10: 2679837 .. 2680214 (-)
RNA-Seq Expression	Carg09889
Synteny	Carg09889

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACTAGTCTCTTCACTTTTGCCCCCACCAGCATCCGTGCCTGTGCCTCCTCCGCCGACCATAACCGCCGGAAAACCTCCTCCTCCTCCTCCTCCTCCAATTGGTGGGCCCCGGTCTTCGGATGGTCCTCCGAACCGGACTACATCGACTCCGGCAACAAATCCAACCCTAAAAACCTAGCCGACGGAGTTTCAAAATCAGATCCAGAGACGAAATCGGCGAGAAATCGATTTTCCCCTGGCTGCTTCACGGAGTCGAAGGCACGACAGCTTCGCCTGATGACGATGGAAACGGAATCATTTCACGATGTTATGTACCACTCAGCAATCGCATCTCGCCTCGCTACCGACTTCAAAAGTCGCGCCGATTCCTGA

mRNA sequence

ATGGCGACTAGTCTCTTCACTTTTGCCCCCACCAGCATCCGTGCCTGTGCCTCCTCCGCCGACCATAACCGCCGGAAAACCTCCTCCTCCTCCTCCTCCTCCAATTGGTGGGCCCCGGTCTTCGGATGGTCCTCCGAACCGGACTACATCGACTCCGGCAACAAATCCAACCCTAAAAACCTAGCCGACGGAGTTTCAAAATCAGATCCAGAGACGAAATCGGCGAGAAATCGATTTTCCCCTGGCTGCTTCACGGAGTCGAAGGCACGACAGCTTCGCCTGATGACGATGGAAACGGAATCATTTCACGATGTTATGTACCACTCAGCAATCGCATCTCGCCTCGCTACCGACTTCAAAAGTCGCGCCGATTCCTGA

Coding sequence (CDS)

ATGGCGACTAGTCTCTTCACTTTTGCCCCCACCAGCATCCGTGCCTGTGCCTCCTCCGCCGACCATAACCGCCGGAAAACCTCCTCCTCCTCCTCCTCCTCCAATTGGTGGGCCCCGGTCTTCGGATGGTCCTCCGAACCGGACTACATCGACTCCGGCAACAAATCCAACCCTAAAAACCTAGCCGACGGAGTTTCAAAATCAGATCCAGAGACGAAATCGGCGAGAAATCGATTTTCCCCTGGCTGCTTCACGGAGTCGAAGGCACGACAGCTTCGCCTGATGACGATGGAAACGGAATCATTTCACGATGTTATGTACCACTCAGCAATCGCATCTCGCCTCGCTACCGACTTCAAAAGTCGCGCCGATTCCTGA

Protein sequence

MATSLFTFAPTSIRACASSADHNRRKTSSSSSSSNWWAPVFGWSSEPDYIDSGNKSNPKNLADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDFKSRADS

Homology

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BLAST of Carg09889 vs. NCBI nr
Match: KAG6589876.1 (hypothetical protein SDJN03_15299, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023547.1 hypothetical protein SDJN02_14573, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.7 bits (626), Expect = 2.1e-61
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MATSLFTFAPTSIRACASSADHNRRKTSSSSSSSNWWAPVFGWSSEPDYIDSGNKSNPKN 60
           MATSLFTFAPTSIRACASSADHNRRKTSSSSSSSNWWAPVFGWSSEPDYIDSGNKSNPKN
Sbjct: 1   MATSLFTFAPTSIRACASSADHNRRKTSSSSSSSNWWAPVFGWSSEPDYIDSGNKSNPKN 60

Query: 61  LADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDFK 120
           LADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDFK
Sbjct: 61  LADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDFK 120

Query: 121 SRADS 126
           SRADS
Sbjct: 121 SRADS 125

[Close]

BLAST of Carg09889 vs. NCBI nr
Match: XP_022960569.1 (uncharacterized protein LOC111461308 [Cucurbita moschata])

HSP 1 Score: 235.7 bits (600), Expect = 2.1e-58
Identity = 121/126 (96.03%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MATSLFTFAPTSIRACASSADHNRRK-TSSSSSSSNWWAPVFGWSSEPDYIDSGNKSNPK 60
           MAT+LFTFAPTSIRACASSADHNRRK +SSSSSSSNWWAPVFGWSSEPDYIDSGNKSNPK
Sbjct: 1   MATNLFTFAPTSIRACASSADHNRRKASSSSSSSSNWWAPVFGWSSEPDYIDSGNKSNPK 60

Query: 61  NLADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDF 120
           NLADGVSKSDPETKS+RNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDF
Sbjct: 61  NLADGVSKSDPETKSSRNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDF 120

Query: 121 KSRADS 126
           KSR DS
Sbjct: 121 KSRGDS 126

[Close]

BLAST of Carg09889 vs. NCBI nr
Match: XP_022987907.1 (uncharacterized protein LOC111485309 [Cucurbita maxima])

HSP 1 Score: 228.4 bits (581), Expect = 3.4e-56
Identity = 118/125 (94.40%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MATSLFTFAPTSIRACASSADHNRRKTSSSSSSSNWWAPVFGWSSEPDYIDSGNKSNPKN 60
           MAT+LFTFAPTSIRACASSADHNRRKT  SSSSSNWWAPVFGWSSEPDYIDS NKSNPK 
Sbjct: 1   MATNLFTFAPTSIRACASSADHNRRKT--SSSSSNWWAPVFGWSSEPDYIDSANKSNPKT 60

Query: 61  LADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDFK 120
            ADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDFK
Sbjct: 61  PADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDFK 120

Query: 121 SRADS 126
           SR DS
Sbjct: 121 SRGDS 123

[Close]

BLAST of Carg09889 vs. NCBI nr
Match: XP_023516733.1 (uncharacterized protein LOC111780539 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.4 bits (568), Expect = 1.1e-54
Identity = 116/125 (92.80%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MATSLFTFAPTSIRACASSADHNRRKTSSSSSSSNWWAPVFGWSSEPDYIDSGNKSNPKN 60
           MAT+LFTFAPTSIRA ASSAD+NRRKT    SSSNWWAPVFGWSSEPDYIDSGNKSNPKN
Sbjct: 1   MATNLFTFAPTSIRARASSADNNRRKT---FSSSNWWAPVFGWSSEPDYIDSGNKSNPKN 60

Query: 61  LADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDFK 120
           LADGVSKSDPETKS+RNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDFK
Sbjct: 61  LADGVSKSDPETKSSRNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDFK 120

Query: 121 SRADS 126
           SR DS
Sbjct: 121 SRGDS 122

[Close]

BLAST of Carg09889 vs. NCBI nr
Match: XP_038880363.1 (uncharacterized protein LOC120072011 [Benincasa hispida])

HSP 1 Score: 197.6 bits (501), Expect = 6.4e-47
Identity = 103/129 (79.84%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 1   MATSLFTFAPTSIRACASSA----DHNRRKTSSSSSSSNWWAPVFGWSSEPDYIDSGNKS 60
           MAT+L TF P  IRACA+SA    DHNRRKT   SSSSNWWAPVFGWSSEPDYIDS NK+
Sbjct: 1   MATNLLTFPPAGIRACAASADRRSDHNRRKT---SSSSNWWAPVFGWSSEPDYIDSANKA 60

Query: 61  NPKNLADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLA 120
            P++LA GVSKSDPETKS R RFSPGCFTE+KARQLR+MT ETESFHDVMYHSAIASRLA
Sbjct: 61  EPQDLAGGVSKSDPETKSVRARFSPGCFTEAKARQLRMMTTETESFHDVMYHSAIASRLA 120

Query: 121 TDFKSRADS 126
           +DFK+RADS
Sbjct: 121 SDFKTRADS 126

[Close]

BLAST of Carg09889 vs. ExPASy TrEMBL
Match: A0A6J1HBD8 (uncharacterized protein LOC111461308 OS=Cucurbita moschata OX=3662 GN=LOC111461308 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.0e-58
Identity = 121/126 (96.03%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MATSLFTFAPTSIRACASSADHNRRK-TSSSSSSSNWWAPVFGWSSEPDYIDSGNKSNPK 60
           MAT+LFTFAPTSIRACASSADHNRRK +SSSSSSSNWWAPVFGWSSEPDYIDSGNKSNPK
Sbjct: 1   MATNLFTFAPTSIRACASSADHNRRKASSSSSSSSNWWAPVFGWSSEPDYIDSGNKSNPK 60

Query: 61  NLADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDF 120
           NLADGVSKSDPETKS+RNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDF
Sbjct: 61  NLADGVSKSDPETKSSRNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDF 120

Query: 121 KSRADS 126
           KSR DS
Sbjct: 121 KSRGDS 126

[Close]

BLAST of Carg09889 vs. ExPASy TrEMBL
Match: A0A6J1JBM9 (uncharacterized protein LOC111485309 OS=Cucurbita maxima OX=3661 GN=LOC111485309 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.6e-56
Identity = 118/125 (94.40%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 1   MATSLFTFAPTSIRACASSADHNRRKTSSSSSSSNWWAPVFGWSSEPDYIDSGNKSNPKN 60
           MAT+LFTFAPTSIRACASSADHNRRKT  SSSSSNWWAPVFGWSSEPDYIDS NKSNPK 
Sbjct: 1   MATNLFTFAPTSIRACASSADHNRRKT--SSSSSNWWAPVFGWSSEPDYIDSANKSNPKT 60

Query: 61  LADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDFK 120
            ADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDFK
Sbjct: 61  PADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDFK 120

Query: 121 SRADS 126
           SR DS
Sbjct: 121 SRGDS 123

[Close]

BLAST of Carg09889 vs. ExPASy TrEMBL
Match: A0A0A0LTN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G303705 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.0e-45
Identity = 102/129 (79.07%), Postives = 109/129 (84.50%), Query Frame = 0


Query: 1   MATSLFTFAPTSIRACASSA----DHNRRKTSSSSSSSNWWAPVFGWSSEPDYIDSGNKS 60
           MAT+L TF P  IRACASSA    DH+RRKT   SSSSNWWAPVFGWSSEPDYIDSGNK+
Sbjct: 1   MATNLLTFPPAGIRACASSADRRSDHSRRKT---SSSSNWWAPVFGWSSEPDYIDSGNKA 60

Query: 61  NPKNLADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLA 120
            P+NLA G SK D ETKS R RFSPGCFTE+KARQLR+MT ETESFHDVMYHSAIASRLA
Sbjct: 61  EPQNLAGGSSKPDLETKSLRGRFSPGCFTEAKARQLRMMTTETESFHDVMYHSAIASRLA 120

Query: 121 TDFKSRADS 126
           +DFKSR DS
Sbjct: 121 SDFKSREDS 126

[Close]

BLAST of Carg09889 vs. ExPASy TrEMBL
Match: A0A5D3CSV6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold15G00250 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.7e-42
Identity = 97/130 (74.62%), Postives = 106/130 (81.54%), Query Frame = 0


Query: 1   MATSLFTFAPTSIRACASSADH----NRRKTSSSSSSSNWWAPVFGWSSEPDYIDS-GNK 60
           MAT+L TF P  IRACA+SAD     NRRK   +SSS+NWWAPVFGWSSEPDYIDS  NK
Sbjct: 1   MATNLLTFTPAGIRACAASADRRSDLNRRK---ASSSTNWWAPVFGWSSEPDYIDSAANK 60

Query: 61  SNPKNLADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRL 120
           + P+NLA   SK D ETKS R RFSPGCFTE+KARQLR+MT ETESFHDVMYHSAIASRL
Sbjct: 61  AEPQNLAGAASKPDLETKSVRGRFSPGCFTEAKARQLRMMTTETESFHDVMYHSAIASRL 120

Query: 121 ATDFKSRADS 126
           A+DFKSR DS
Sbjct: 121 ASDFKSRGDS 127

[Close]

BLAST of Carg09889 vs. ExPASy TrEMBL
Match: A0A1S4E4Y4 (uncharacterized protein LOC103502747 OS=Cucumis melo OX=3656 GN=LOC103502747 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.7e-42
Identity = 97/130 (74.62%), Postives = 106/130 (81.54%), Query Frame = 0


Query: 1   MATSLFTFAPTSIRACASSADH----NRRKTSSSSSSSNWWAPVFGWSSEPDYIDS-GNK 60
           MAT+L TF P  IRACA+SAD     NRRK   +SSS+NWWAPVFGWSSEPDYIDS  NK
Sbjct: 1   MATNLLTFTPAGIRACAASADRRSDLNRRK---ASSSTNWWAPVFGWSSEPDYIDSAANK 60

Query: 61  SNPKNLADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRL 120
           + P+NLA   SK D ETKS R RFSPGCFTE+KARQLR+MT ETESFHDVMYHSAIASRL
Sbjct: 61  AEPQNLAGAASKPDLETKSVRGRFSPGCFTEAKARQLRMMTTETESFHDVMYHSAIASRL 120

Query: 121 ATDFKSRADS 126
           A+DFKSR DS
Sbjct: 121 ASDFKSRGDS 127

[Close]

BLAST of Carg09889 vs. TAIR 10
Match: AT1G52720.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15630.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-17
Identity = 54/128 (42.19%), Postives = 72/128 (56.25%), Query Frame = 0


Query: 1   MATSLFTFAPTSIRACASSA----DHNRRKTSSSSSSSNWWAPVFGWSSEPDYIDSGNKS 60
           MA  +   A  +IRA + S     D NR+K      S+ WWAP+FG  S+PDY+      
Sbjct: 1   MALIITCSALPTIRASSGSGSLNPDQNRKK------SAAWWAPLFGLPSDPDYL------ 60

Query: 61  NPKNLADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLA 120
           N ++    V+    +   +  +F  GCFTE KA+QLR  T E  +FHDVMYHSAIASRLA
Sbjct: 61  NIESSCSTVNPDKTDISGSGQKFRRGCFTEEKAKQLRRKTAEASTFHDVMYHSAIASRLA 116

Query: 121 TDFKSRAD 125
           +D   R +
Sbjct: 121 SDITGRVE 116

[Close]

BLAST of Carg09889 vs. TAIR 10
Match: AT3G15630.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52720.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.7 bits (208), Expect = 5.6e-17
Identity = 61/120 (50.83%), Postives = 76/120 (63.33%), Query Frame = 0


Query: 1   MATSLFTFAPTSIRACASSADHNRRKTSSSSSSSNWWAPVFGWSSEPDYIDSGNKSNPKN 60
           MAT +   A +SIRA +S +D  R+K  SS S   WWAP+FG SSEPDY+   NK+   N
Sbjct: 1   MATIISCSALSSIRA-SSESDPARKKPVSSVS---WWAPLFGMSSEPDYV---NKT--VN 60

Query: 61  LADGVSKSDPETKSARNRFSPGCFTESKARQLRLMTMETESFHDVMYHSAIASRLATDFK 120
           L   + K+  E +S R      C TE KA+QLR  T E  +FHDVMYHSAIASRLA+D +
Sbjct: 61  LESDLDKA--EKRSLR-----CCLTEEKAKQLRRKTAEASTFHDVMYHSAIASRLASDVR 104

The following BLAST results are available for this feature:

BLAST of Carg09889 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589876.1	2.1e-61	100.00	hypothetical protein SDJN03_15299, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022960569.1	2.1e-58	96.03	uncharacterized protein LOC111461308 [Cucurbita moschata]	[more]
XP_022987907.1	3.4e-56	94.40	uncharacterized protein LOC111485309 [Cucurbita maxima]	[more]
XP_023516733.1	1.1e-54	92.80	uncharacterized protein LOC111780539 [Cucurbita pepo subsp. pepo]	[more]
XP_038880363.1	6.4e-47	79.84	uncharacterized protein LOC120072011 [Benincasa hispida]	[more]

BLAST of Carg09889 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg09889 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HBD8	1.0e-58	96.03	uncharacterized protein LOC111461308 OS=Cucurbita moschata OX=3662 GN=LOC1114613...	[more]
A0A6J1JBM9	1.6e-56	94.40	uncharacterized protein LOC111485309 OS=Cucurbita maxima OX=3661 GN=LOC111485309...	[more]
A0A0A0LTN7	1.0e-45	79.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G303705 PE=4 SV=1	[more]
A0A5D3CSV6	6.7e-42	74.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4E4Y4	6.7e-42	74.62	uncharacterized protein LOC103502747 OS=Cucumis melo OX=3656 GN=LOC103502747 PE=...	[more]

BLAST of Carg09889 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52720.1	1.5e-17	42.19	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G15630.1	5.6e-17	50.83	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..38
None	No IPR available	PANTHER	PTHR34198:SF18	PROTEIN, PUTATIVE-RELATED	coord: 1..124
None	No IPR available	PANTHER	PTHR34198	OS01G0175100 PROTEIN	coord: 1..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09889-RA	Carg09889-RA	mRNA