Carg09877 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09877
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	tudor domain-containing protein 3
Location	Carg_Chr10: 2752740 .. 2753660 (+)
RNA-Seq Expression	Carg09877
Synteny	Carg09877

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTAATTAGGAATTAGGATCTAACCTCAAACTTCTACCGCCTCGAATTACCGATATCAGGCCGGTCAGTGAAGGGGGGCAAGTGCACATTCCAGCGCTGAGGCGATGGCTGATGCTTCTGTTTCTGTGCTTGAAACATTACGAGTGAGAGGATGGAATTTCGGCGATTTGGACGAAGTTAGGGCCGTAATCATGATCGGTAGTGCCTTGGCCGATGATCCGACTTCGGTCGTTGATTCGGTGGAGTCGGAGCTCATAAACATGGACCTTAGGTCCATTGGAGGCAAGTCCTTGCCTGACCTTTCTCTTCTTCGCAAGTCTTCTCGTGTTCTTGGCCCTCTGGTTCTCCAGGTGAATTGTAGTCTCTTATGGTTGTCAGGTGTTTCATAGTTGCTGGAAAAAAGTGTGGATAAAGAATCAATAAGTTCATATATCTATCCTTCGTAGTCCGTTGACGCAGTGAATGAAGTTAATTTTATATTTGTTCTTTGATTATGGAGTTCCTTATTTCATATTCCCACTTTTTTTTTTTTTTGCGGAAACTAGAAGCGCGGGGTAGCTATTCTTTGTCTTAGTCGCTTTCTGATCAACATTATTTCATCAATGATTTACTAGTAGATGATTTCAGCTGTTTTAGCAGATATCATCAGTAAGAGACATATCGCGAAGTAGCCTAGACGGTATGACGAAGGCTTCTAATGATCGGCGTCTCCTACGGTTCGGTCTCACTGATGGACACACTGAAATTACTGCTATAGAGTACTCTCATATACCATCTATTCCTGATGACATTCCTCCTGGCACCAAGGTATTCCGGATAATTTCTCCTTGCATGTCTTTCCAGCTACTCTATTTTGAAGAGTTAAAGTTCTTGATCTTTTTAAAGTACAAGTTCTTGATAGAAGTTGATTGTCCTGATTAA

mRNA sequence

AGTAATTAGGAATTAGGATCTAACCTCAAACTTCTACCGCCTCGAATTACCGATATCAGGCCGGTCAGTGAAGGGGGGCAAGTGCACATTCCAGCGCTGAGGCGATGGCTGATGCTTCTGTTTCTGTGCTTGAAACATTACGAGTGAGAGGATGGAATTTCGGCGATTTGGACGAAGTTAGGGCCGTAATCATGATCGGTAGTGCCTTGGCCGATGATCCGACTTCGGTCGTTGATTCGGTGGAGTCGGAGCTCATAAACATGGACCTTAGGTCCATTGGAGGCAAGTCCTTGCCTGACCTTTCTCTTCTTCGCAAGTCTTCTCGTGTTCTTGGCCCTCTGGTTCTCCAGATATCATCAGTAAGAGACATATCGCGAAGTAGCCTAGACGGTATGACGAAGGCTTCTAATGATCGGCGTCTCCTACGGTTCGGTCTCACTGATGGACACACTGAAATTACTGCTATAGAGTACTCTCATATACCATCTATTCCTGATGACATTCCTCCTGGCACCAAGGTATTCCGGATAATTTCTCCTTGCATGTCTTTCCAGCTACTCTATTTTGAAGAGTTAAAGTTCTTGATCTTTTTAAAGTACAAGTTCTTGATAGAAGTTGATTGTCCTGATTAA

Coding sequence (CDS)

ATGGCTGATGCTTCTGTTTCTGTGCTTGAAACATTACGAGTGAGAGGATGGAATTTCGGCGATTTGGACGAAGTTAGGGCCGTAATCATGATCGGTAGTGCCTTGGCCGATGATCCGACTTCGGTCGTTGATTCGGTGGAGTCGGAGCTCATAAACATGGACCTTAGGTCCATTGGAGGCAAGTCCTTGCCTGACCTTTCTCTTCTTCGCAAGTCTTCTCGTGTTCTTGGCCCTCTGGTTCTCCAGATATCATCAGTAAGAGACATATCGCGAAGTAGCCTAGACGGTATGACGAAGGCTTCTAATGATCGGCGTCTCCTACGGTTCGGTCTCACTGATGGACACACTGAAATTACTGCTATAGAGTACTCTCATATACCATCTATTCCTGATGACATTCCTCCTGGCACCAAGGTATTCCGGATAATTTCTCCTTGCATGTCTTTCCAGCTACTCTATTTTGAAGAGTTAAAGTTCTTGATCTTTTTAAAGTACAAGTTCTTGATAGAAGTTGATTGTCCTGATTAA

Protein sequence

MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGGKSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITAIEYSHIPSIPDDIPPGTKVFRIISPCMSFQLLYFEELKFLIFLKYKFLIEVDCPD

Homology

[Close]

BLAST of Carg09877 vs. NCBI nr
Match: KAG7023559.1 (Tudor domain-containing protein 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 340.1 bits (871), Expect = 1.1e-89
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60
           MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG
Sbjct: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60

Query: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120
           KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA
Sbjct: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120

Query: 121 IEYSHIPSIPDDIPPGTKVFRIISPCMSFQLLYFEELKFLIFLKYKFLIEVDCPD 176
           IEYSHIPSIPDDIPPGTKVFRIISPCMSFQLLYFEELKFLIFLKYKFLIEVDCPD
Sbjct: 121 IEYSHIPSIPDDIPPGTKVFRIISPCMSFQLLYFEELKFLIFLKYKFLIEVDCPD 175

[Close]

BLAST of Carg09877 vs. NCBI nr
Match: KAG6589889.1 (Protein PGR, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 268.9 bits (686), Expect = 3.2e-68
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60
           MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG
Sbjct: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60

Query: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120
           KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA
Sbjct: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120

Query: 121 IEYSHIPSIPDDIPPGTKV 140
           IEYSHIPSIPDDIPPGTKV
Sbjct: 121 IEYSHIPSIPDDIPPGTKV 139

[Close]

BLAST of Carg09877 vs. NCBI nr
Match: XP_022961249.1 (tudor domain-containing protein 3 [Cucurbita moschata])

HSP 1 Score: 268.9 bits (686), Expect = 3.2e-68
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60
           MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG
Sbjct: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60

Query: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120
           KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA
Sbjct: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120

Query: 121 IEYSHIPSIPDDIPPGTKV 140
           IEYSHIPSIPDDIPPGTKV
Sbjct: 121 IEYSHIPSIPDDIPPGTKV 139

[Close]

BLAST of Carg09877 vs. NCBI nr
Match: XP_023516947.1 (tudor domain-containing protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.4 bits (677), Expect = 3.5e-67
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60
           MADASV+VLETLRVRGWNF DLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG
Sbjct: 1   MADASVAVLETLRVRGWNFSDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60

Query: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120
           KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA
Sbjct: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120

Query: 121 IEYSHIPSIPDDIPPGTKV 140
           IEYSHIPSIPDDIPPGTKV
Sbjct: 121 IEYSHIPSIPDDIPPGTKV 139

[Close]

BLAST of Carg09877 vs. NCBI nr
Match: XP_022987733.1 (tudor domain-containing protein 3 isoform X1 [Cucurbita maxima])

HSP 1 Score: 260.0 bits (663), Expect = 1.5e-65
Identity = 134/139 (96.40%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60
           MADASV+VLETLRVRGW FGDLDEVR VIMIGSALADDPT VVDSVESELINMDLRSIGG
Sbjct: 1   MADASVAVLETLRVRGWTFGDLDEVRGVIMIGSALADDPTLVVDSVESELINMDLRSIGG 60

Query: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120
           KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA
Sbjct: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120

Query: 121 IEYSHIPSIPDDIPPGTKV 140
           IEYSHIPS PDDIPPGTKV
Sbjct: 121 IEYSHIPSFPDDIPPGTKV 139

[Close]

BLAST of Carg09877 vs. ExPASy Swiss-Prot
Match: Q91W18 (Tudor domain-containing protein 3 OS=Mus musculus OX=10090 GN=Tdrd3 PE=1 SV=4)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-10
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 51  INMDLRSIGGKSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFG 110
           +N DLR+IG K LP      K  ++ GP VLQI  VR+++    +  ++A+   R+LR  
Sbjct: 41  LNTDLRTIGKKFLPSDINGGKVEKLEGPCVLQIQKVRNVAAPKDNEESQAA--PRMLRVQ 100

Query: 111 LTDGHTEITAIEYSHIPSIPDDIPPGTKV 140
           +TDGHT  TA+E+S+I  I  + PPGTKV
Sbjct: 101 MTDGHTSCTAVEFSYISKISLNTPPGTKV 127

[Close]

BLAST of Carg09877 vs. ExPASy Swiss-Prot
Match: Q5ZMS6 (Tudor domain-containing protein 3 OS=Gallus gallus OX=9031 GN=TDRD3 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-10
Identity = 38/89 (42.70%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 51  INMDLRSIGGKSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFG 110
           +N DLR+IG K LP      K  ++ GP VLQI  +R++S    +  ++A+   R+LR  
Sbjct: 41  LNTDLRTIGKKFLPSDINGGKVEKLEGPCVLQIQKIRNVSAPKDNEESQAA--PRMLRLQ 100

Query: 111 LTDGHTEITAIEYSHIPSIPDDIPPGTKV 140
           +TDGHT  TAIEY+ +  I  + PPGTK+
Sbjct: 101 MTDGHTSCTAIEYNSMSKISLNTPPGTKI 127

[Close]

BLAST of Carg09877 vs. ExPASy Swiss-Prot
Match: Q6P1U3 (Tudor domain-containing protein 3 OS=Xenopus tropicalis OX=8364 GN=tdrd3 PE=2 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 4.1e-10
Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 51  INMDLRSIGGKSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFG 110
           +N DLR+ G K LP+     K  +V GP VLQI  +R+IS    +  ++A+   R+LR  
Sbjct: 6   LNTDLRTTGKKFLPNDINGGKVEKVNGPCVLQIQKIRNISAPKDNEESQAA--PRMLRLQ 65

Query: 111 LTDGHTEITAIEYSHIPSIPDDIPPGTKV 140
           LTDGHT  TAIE +++  I  + PPGTK+
Sbjct: 66  LTDGHTSCTAIELNYLSKISLNTPPGTKI 92

[Close]

BLAST of Carg09877 vs. ExPASy Swiss-Prot
Match: Q6NYG6 (Tudor domain-containing protein 3 OS=Danio rerio OX=7955 GN=tdrd3 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-08
Identity = 44/139 (31.65%), Postives = 70/139 (50.36%), Query Frame = 0


Query: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60
           M D S ++++     GW   D      +    S+   + TS  D ++  L N DLR IG 
Sbjct: 1   MCDLSSALIK----EGWYLTD----EGIEECKSSSEKEKTSPTDIIQVAL-NNDLRPIGK 60

Query: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120
             LP      +  ++ GP VLQ+  +R+++ S     ++A+   R+LR  +TDGHT  T 
Sbjct: 61  SFLPADINSGRIEKLEGPCVLQVQKIRNVAASKDHEESQAA--PRMLRVQMTDGHTACTG 120

Query: 121 IEYSHIPSIPDDIPPGTKV 140
           +E+  +  I  + PPGTKV
Sbjct: 121 LEFKQLSKISLNTPPGTKV 128

[Close]

BLAST of Carg09877 vs. ExPASy Swiss-Prot
Match: Q2HJG4 (Tudor domain-containing protein 3 OS=Bos taurus OX=9913 GN=TDRD3 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.1e-06
Identity = 26/63 (41.27%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 77  GPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITAIEYSHIPSIPDDIPPG 136
           GP VLQI  +R+++    +  ++A+   R+LR  +TDGH   TA+E+S++  I  + PPG
Sbjct: 45  GPCVLQIQKIRNVAAPKDNEESQAA--PRMLRLQMTDGHISCTAVEFSYLSKISLNTPPG 104

Query: 137 TKV 140
           TKV
Sbjct: 105 TKV 105

[Close]

BLAST of Carg09877 vs. ExPASy TrEMBL
Match: A0A6J1HDH5 (tudor domain-containing protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111461813 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.5e-68
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60
           MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG
Sbjct: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60

Query: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120
           KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA
Sbjct: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120

Query: 121 IEYSHIPSIPDDIPPGTKV 140
           IEYSHIPSIPDDIPPGTKV
Sbjct: 121 IEYSHIPSIPDDIPPGTKV 139

[Close]

BLAST of Carg09877 vs. ExPASy TrEMBL
Match: A0A6J1JKA7 (tudor domain-containing protein 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485197 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 7.1e-66
Identity = 134/139 (96.40%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60
           MADASV+VLETLRVRGW FGDLDEVR VIMIGSALADDPT VVDSVESELINMDLRSIGG
Sbjct: 1   MADASVAVLETLRVRGWTFGDLDEVRGVIMIGSALADDPTLVVDSVESELINMDLRSIGG 60

Query: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120
           KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA
Sbjct: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120

Query: 121 IEYSHIPSIPDDIPPGTKV 140
           IEYSHIPS PDDIPPGTKV
Sbjct: 121 IEYSHIPSFPDDIPPGTKV 139

[Close]

BLAST of Carg09877 vs. ExPASy TrEMBL
Match: A0A5D3BLA9 (Tudor domain-containing protein 3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00120 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.8e-59
Identity = 122/148 (82.43%), Postives = 137/148 (92.57%), Query Frame = 0


Query: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60
           MADASV+VLETLR+RGWNF D DEV+AVIMIGSALADDP+SVVDSVESELINMDLRSIGG
Sbjct: 1   MADASVAVLETLRLRGWNFADSDEVKAVIMIGSALADDPSSVVDSVESELINMDLRSIGG 60

Query: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120
           KSL + +LLRKSSR+LGP+VLQISSV+DISRSSLDG+ KASN RRLLRFGLTDGH+E+TA
Sbjct: 61  KSLSEPALLRKSSRILGPIVLQISSVKDISRSSLDGILKASNGRRLLRFGLTDGHSELTA 120

Query: 121 IEYSHIPSIPDDIPPGTKV-FRIISPCM 148
           IEYSHIP IPDDIPPGTK+ F I + C+
Sbjct: 121 IEYSHIPFIPDDIPPGTKLNFLIEADCL 148

[Close]

BLAST of Carg09877 vs. ExPASy TrEMBL
Match: A0A1S3CJF1 (tudor domain-containing protein 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501529 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 6.5e-59
Identity = 119/139 (85.61%), Postives = 132/139 (94.96%), Query Frame = 0


Query: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60
           MADASV+VLETLR+RGWNF D DEV+AVIMIGSALADDP+SVVDSVESELINMDLRSIGG
Sbjct: 1   MADASVAVLETLRLRGWNFADSDEVKAVIMIGSALADDPSSVVDSVESELINMDLRSIGG 60

Query: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120
           KSL + +LLRKSSR+LGP+VLQISSV+DISRSSLDG+ KASN RRLLRFGLTDGH+E+TA
Sbjct: 61  KSLSEPALLRKSSRILGPIVLQISSVKDISRSSLDGILKASNGRRLLRFGLTDGHSELTA 120

Query: 121 IEYSHIPSIPDDIPPGTKV 140
           IEYSHIP IPDDIPPGTK+
Sbjct: 121 IEYSHIPFIPDDIPPGTKI 139

[Close]

BLAST of Carg09877 vs. ExPASy TrEMBL
Match: A0A1S4E471 (tudor domain-containing protein 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501529 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.1e-58
Identity = 120/141 (85.11%), Postives = 132/141 (93.62%), Query Frame = 0


Query: 1   MADASVSVLETLRVRGWNFGDLDEVRAVIMIGSALADDPTSVVDSVESELINMDLRSIGG 60
           MADASV+VLETLR+RGWNF D DEV+AVIMIGSALADDP+SVVDSVESELINMDLRSIGG
Sbjct: 1   MADASVAVLETLRLRGWNFADSDEVKAVIMIGSALADDPSSVVDSVESELINMDLRSIGG 60

Query: 61  KSLPDLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITA 120
           KSL + +LLRKSSR+LGP+VLQISSV+DISRSSLDG+ KASN RRLLRFGLTDGH+E+TA
Sbjct: 61  KSLSEPALLRKSSRILGPIVLQISSVKDISRSSLDGILKASNGRRLLRFGLTDGHSELTA 120

Query: 121 IEYSHIPSIPDDIPPGTKVFR 142
           IEYSHIP IPDDIPPGTK  R
Sbjct: 121 IEYSHIPFIPDDIPPGTKFDR 141

[Close]

BLAST of Carg09877 vs. TAIR 10
Match: AT5G19950.1 (Domain of unknown function (DUF1767) )

HSP 1 Score: 131.7 bits (330), Expect = 5.6e-31
Identity = 67/135 (49.63%), Postives = 99/135 (73.33%), Query Frame = 0


Query: 8   VLETLRVRGWNFGDLDEVRAVIMIGSAL---ADDPTSVVDSVESELINMDLRSIGGKSLP 67
           V+  L  RGW F D++ +++++   S+L    +   ++V+SVE+EL+NMD++ IGGKSLP
Sbjct: 17  VINALTSRGWCFRDVEYLKSLVTEISSLIGGGNKTGAIVESVEAELLNMDIKLIGGKSLP 76

Query: 68  DLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITAIEYS 127
           D + LR+ S + GP VLQIS VRD++RSS +    +S  +R+L+F LTDG TEI+A+EYS
Sbjct: 77  DPTELRRCSHLQGPKVLQISYVRDVTRSSAEEFVGSSTGKRVLKFALTDGKTEISALEYS 136

Query: 128 HIPSIPDDIPPGTKV 140
           HIP+I +D+ PGTKV
Sbjct: 137 HIPTINNDVTPGTKV 151

[Close]

BLAST of Carg09877 vs. TAIR 10
Match: AT5G19950.2 (Domain of unknown function (DUF1767) )

HSP 1 Score: 131.7 bits (330), Expect = 5.6e-31
Identity = 67/135 (49.63%), Postives = 99/135 (73.33%), Query Frame = 0


Query: 8   VLETLRVRGWNFGDLDEVRAVIMIGSAL---ADDPTSVVDSVESELINMDLRSIGGKSLP 67
           V+  L  RGW F D++ +++++   S+L    +   ++V+SVE+EL+NMD++ IGGKSLP
Sbjct: 17  VINALTSRGWCFRDVEYLKSLVTEISSLIGGGNKTGAIVESVEAELLNMDIKLIGGKSLP 76

Query: 68  DLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITAIEYS 127
           D + LR+ S + GP VLQIS VRD++RSS +    +S  +R+L+F LTDG TEI+A+EYS
Sbjct: 77  DPTELRRCSHLQGPKVLQISYVRDVTRSSAEEFVGSSTGKRVLKFALTDGKTEISALEYS 136

Query: 128 HIPSIPDDIPPGTKV 140
           HIP+I +D+ PGTKV
Sbjct: 137 HIPTINNDVTPGTKV 151

[Close]

BLAST of Carg09877 vs. TAIR 10
Match: AT5G19950.3 (Domain of unknown function (DUF1767) )

HSP 1 Score: 131.7 bits (330), Expect = 5.6e-31
Identity = 67/135 (49.63%), Postives = 99/135 (73.33%), Query Frame = 0


Query: 8   VLETLRVRGWNFGDLDEVRAVIMIGSAL---ADDPTSVVDSVESELINMDLRSIGGKSLP 67
           V+  L  RGW F D++ +++++   S+L    +   ++V+SVE+EL+NMD++ IGGKSLP
Sbjct: 17  VINALTSRGWCFRDVEYLKSLVTEISSLIGGGNKTGAIVESVEAELLNMDIKLIGGKSLP 76

Query: 68  DLSLLRKSSRVLGPLVLQISSVRDISRSSLDGMTKASNDRRLLRFGLTDGHTEITAIEYS 127
           D + LR+ S + GP VLQIS VRD++RSS +    +S  +R+L+F LTDG TEI+A+EYS
Sbjct: 77  DPTELRRCSHLQGPKVLQISYVRDVTRSSAEEFVGSSTGKRVLKFALTDGKTEISALEYS 136

Query: 128 HIPSIPDDIPPGTKV 140
           HIP+I +D+ PGTKV
Sbjct: 137 HIPTINNDVTPGTKV 151

The following BLAST results are available for this feature:

BLAST of Carg09877 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023559.1	1.1e-89	100.00	Tudor domain-containing protein 3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6589889.1	3.2e-68	100.00	Protein PGR, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022961249.1	3.2e-68	100.00	tudor domain-containing protein 3 [Cucurbita moschata]	[more]
XP_023516947.1	3.5e-67	98.56	tudor domain-containing protein 3 [Cucurbita pepo subsp. pepo]	[more]
XP_022987733.1	1.5e-65	96.40	tudor domain-containing protein 3 isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg09877 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q91W18	1.4e-10	43.82	Tudor domain-containing protein 3 OS=Mus musculus OX=10090 GN=Tdrd3 PE=1 SV=4	[more]
Q5ZMS6	2.4e-10	42.70	Tudor domain-containing protein 3 OS=Gallus gallus OX=9031 GN=TDRD3 PE=2 SV=1	[more]
Q6P1U3	4.1e-10	43.82	Tudor domain-containing protein 3 OS=Xenopus tropicalis OX=8364 GN=tdrd3 PE=2 SV...	[more]
Q6NYG6	1.3e-08	31.65	Tudor domain-containing protein 3 OS=Danio rerio OX=7955 GN=tdrd3 PE=2 SV=1	[more]
Q2HJG4	6.1e-06	41.27	Tudor domain-containing protein 3 OS=Bos taurus OX=9913 GN=TDRD3 PE=2 SV=1	[more]

BLAST of Carg09877 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HDH5	1.5e-68	100.00	tudor domain-containing protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111461813 ...	[more]
A0A6J1JKA7	7.1e-66	96.40	tudor domain-containing protein 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A5D3BLA9	3.8e-59	82.43	Tudor domain-containing protein 3 isoform X2 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3CJF1	6.5e-59	85.61	tudor domain-containing protein 3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
A0A1S4E471	1.1e-58	85.11	tudor domain-containing protein 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10350...	[more]

BLAST of Carg09877 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19950.1	5.6e-31	49.63	Domain of unknown function (DUF1767)	[more]
AT5G19950.2	5.6e-31	49.63	Domain of unknown function (DUF1767)	[more]
AT5G19950.3	5.6e-31	49.63	Domain of unknown function (DUF1767)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033472	RecQ mediated genome instability protein, DUF1767	SMART	SM01161	DUF1767_2	coord: 9..98 e-value: 2.2E-8 score: 43.9
IPR042470	RecQ mediated genome instability protein, N-terminal, subdomain 2	GENE3D	2.40.50.770		coord: 54..154 e-value: 6.2E-16 score: 60.2
IPR013894	RecQ mediated genome instability protein, N-terminal	PFAM	PF08585	RMI1_N	coord: 100..139 e-value: 1.7E-7 score: 31.3
None	No IPR available	PANTHER	PTHR13681	SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED	coord: 8..139
None	No IPR available	PANTHER	PTHR13681:SF24	RE01471P	coord: 8..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09877-RA	Carg09877-RA	mRNA