Carg09863 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09863
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	LEA_2 domain-containing protein
Location	Carg_Chr10: 2845232 .. 2847740 (-)
RNA-Seq Expression	Carg09863
Synteny	Carg09863

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTGCTCTAAGGACGGTTCGATCCCTGTTCCTTACTCTCCTATTCCCCCAAATGCTGCTGCACCGCAAAACGTTGTCGTTTTATCTCTCTATCGTCCCCCTCTCTACCGGCAGCGGCGGCTTCTTCGCCTCTGTGCCCTCTACTCCGCCGCTTTCCTCCTCCTCTCCGCCTTTGTTTTTCTACTTTTTCCGTCCGATCCCTCGCTCCAACTCGTTCGATTGAAACTCAATGGGGTGAACGTCCGTTTGTTGCCTGCTGTCGTCCTTGACCTTTCTTTCTCTGCTTCTGTTAGGGTTCGGAATAAGAACTTTTTTTCTCTCGATTATAATTACCTTGGCGTTTCGGTCGGCTACCGGGGAAGACGACTTGGATTTGTGAGCTCTGATGGCGGTCGAGTTTCTGCTCGAGGCTCCTCTTACGTGAACGCCACTCTCGATTTGAATGGGTTACAGATCATTCACGACGTCTTTTTCTTGCTTGAGGATCTAAGGAAGGGTATAATTCCTTTCGATACGGAGACAGAAGTGGAAGGATCCATGGGGCTTTTCTTTATCAAATTCCCAATTAAGGTAATGTTGATCTTGTTCTGTTTCCAACAATAGGTCAAATCTTTACTCGGAATTGTGAGTTCTTTCGATGTTGATTCGTTTTAAAGCCTCGCATTTTCAATGATCGAAATTGCGGTAGCATCATTATACATTTGAGCTTTTGTCTGTTTGATTAGTTTGCAATCATTGAATGGATACACCGCAAGAACACTCCATTTGTTTGAAATCACCACGTTTTAATTAATGCTCATTTTGTTTTGACGGCGATTACATGTTTCTTAGTGTGGAAGTTCAGATAATTGGAAAAGAACACTCAACTCTGTGATTGACTATTTGGACTTTTAGAACCCATTTCTAGTCCTGCAAGTTGCAGCTCCTAAATCATTCCCAAAACCATAGGCCCAATTGATAACCATTCGATTTTGAAATTTGCTTGTTTTCTCACAATTTCTTTACAATGAACTTCATCCCTGCATTTGACTTCTTAGATAAATTTGAGAAACAAAAACAAGCTTTTATAAACTAGCTAGTTTTCAAAACGTGACATGGGTTTTCAAAACATAACAAAAGAAAGACTCTAGGAAGCTTAATTTTCAGTAACCAGAAACCAAATCATTATCAAACTGGTTATTTTTGTGCTATGCTGTTGACTGGGAAAATGCTTGAAGAACATTTATCTTCTTCTGGATTATATACTTGAACCGTGCCGTTGATTTGATTGTGTCCTGCCTATTCCTACATTTAACTCAATTATAACAATGTTATCTTAGGCTGTTGGTGTTCTTTTATAGACCTCGAATGTTTTTCTAGTGGAATATGTCATCCGAGTTAAAAGAATCCCTGTAATCCCTGTAATTATAATGTTATGTTAGACTGCTGGCGTTCCTGTATAAATGTCAAATAGTGAAATATGTCATTTGAGTTCAAAGAAGTCGTTCTTTTCTCTTCCTCACCCCACCTCCACTGTCATTCTGTGGCCCCTTTCACCAACTGAACATTCAGCATAAATAATTTTAATGTATTCAATGCCTGTTGTTTTGATGTTGATTCTTAATGCTCATCAGGCTACAGTATCATGTGAGGTATTTGTGGATACAAATAGCCAAACAATTGAGCATCAAGATTGCTACCCTGAGGTGAGAATTCATCACTTTGCATACTTTTCTGTTGATATTTCTGCCAAAATGACAACCTCACAACCTCTTTGATTTGCAGTGAACCAAAGATGGGAATTCGGTTTGATTATGACTCTTGTGACGTGAAGCTGAAACTGGGAAGTGGGAACTCCCCTGATATTGTTGAATCTGAGTGTTAATATTACTCGCAGAAAGTTAAGCTCCATTGTTCATATGCTAGAGATTTAAAAGAAAAAGTAAGTTCCGAATATCTTTGTGGATTATTACTTATAAACTATGCTTTTATAATGTAGTCAGATTGTTACACAAGTTAAAGTTCATTTGTTATGTGTAGTAGTAGGCTGTTGTTGCCATTGCAATAATGAGAGTAAATTCTGTGCTTTACTCGTGCTTCTGTGTTCATTCGTGTGAAGAGTTTCTTACCCATTTGGGAATTAAACATTCTGAAATAAAGATAAATCTATGTGGAATCACATCATATGGGAAATTAGTCGAAGAAATGAAGTTTTGAAAACATTCAAGCAAATTAAAAGCCACTGCTATTCATTTTCTTCTGCAATTACATTCCGGCGATTCAAACACCAATTACTCATCGTTAAACAGAGCGACCTTTTTACTCGCCGCCGGTCCACTTTTCACCATCCGCGGCCTCCCAACCCAAACGTACTCACTTCGGTGCAGCCTGCAACGAAACGACCCAGGGTGCCTCGTCGGCGAGCACAAGCACCGCTTTTTCACCGACTCGCCACCGCCACTCTCAACCGCCGTCGCCGCCGTCTGCAAGAGGACCCAATTGCATTGAACATTCAAAAACTCCCTCC

mRNA sequence

ATGAGCTGCTCTAAGGACGGTTCGATCCCTGTTCCTTACTCTCCTATTCCCCCAAATGCTGCTGCACCGCAAAACGTTGTCGTTTTATCTCTCTATCGTCCCCCTCTCTACCGGCAGCGGCGGCTTCTTCGCCTCTGTGCCCTCTACTCCGCCGCTTTCCTCCTCCTCTCCGCCTTTGTTTTTCTACTTTTTCCGTCCGATCCCTCGCTCCAACTCGTTCGATTGAAACTCAATGGGGTGAACGTCCGTTTGTTGCCTGCTGTCGTCCTTGACCTTTCTTTCTCTGCTTCTGTTAGGGTTCGGAATAAGAACTTTTTTTCTCTCGATTATAATTACCTTGGCGTTTCGGTCGGCTACCGGGGAAGACGACTTGGATTTGTGAGCTCTGATGGCGGTCGAGTTTCTGCTCGAGGCTCCTCTTACGTGAACGCCACTCTCGATTTGAATGGGTTACAGATCATTCACGACGTCTTTTTCTTGCTTGAGGATCTAAGGAAGGGTATAATTCCTTTCGATACGGAGACAGAAGTGGAAGGATCCATGGGGCTTTTCTTTATCAAATTCCCAATTAAGACCTCGAATGTTTTTCTAGTGGAATATGTCATCCGAGTTAAAAGAATCCCTGTAATCCCTTATCATGTGAGGTATTTGTGGATACAAATAGCCAAACAATTGAGCATCAAGATTGCTACCCTGAGTGAACCAAAGATGGGAATTCGGTTTGATTATGACTCTTGTGACGTGAAGCTGAAACTGGGAAGTGGGAACTCCCCTGATATTGTTGAATCTGAGTGTTAATATTACTCGCAGAAAGTTAAGCTCCATTGTTCATATGCTAGAGATTTAAAAGAAAAAGTAAGTTCCGAATATCTTTGTGGATTATTACTTATAAACTATGCTTTTATAATGTAGTCAGATTGTTACACAAGTTAAAGTTCATTTGTTATGTGTAGTAGTAGGCTGTTGTTGCCATTGCAATAATGAGAGTAAATTCTGTGCTTTACTCGTGCTTCTGTGTTCATTCGTGTGAAGAGTTTCTTACCCATTTGGGAATTAAACATTCTGAAATAAAGATAAATCTATGTGGAATCACATCATATGGGAAATTAGTCGAAGAAATGAAGTTTTGAAAACATTCAAGCAAATTAAAAGCCACTGCTATTCATTTTCTTCTGCAATTACATTCCGGCGATTCAAACACCAATTACTCATCGTTAAACAGAGCGACCTTTTTACTCGCCGCCGGTCCACTTTTCACCATCCGCGGCCTCCCAACCCAAACGTACTCACTTCGGTGCAGCCTGCAACGAAACGACCCAGGGTGCCTCGTCGGCGAGCACAAGCACCGCTTTTTCACCGACTCGCCACCGCCACTCTCAACCGCCGTCGCCGCCGTCTGCAAGAGGACCCAATTGCATTGAACATTCAAAAACTCCCTCC

Coding sequence (CDS)

ATGAGCTGCTCTAAGGACGGTTCGATCCCTGTTCCTTACTCTCCTATTCCCCCAAATGCTGCTGCACCGCAAAACGTTGTCGTTTTATCTCTCTATCGTCCCCCTCTCTACCGGCAGCGGCGGCTTCTTCGCCTCTGTGCCCTCTACTCCGCCGCTTTCCTCCTCCTCTCCGCCTTTGTTTTTCTACTTTTTCCGTCCGATCCCTCGCTCCAACTCGTTCGATTGAAACTCAATGGGGTGAACGTCCGTTTGTTGCCTGCTGTCGTCCTTGACCTTTCTTTCTCTGCTTCTGTTAGGGTTCGGAATAAGAACTTTTTTTCTCTCGATTATAATTACCTTGGCGTTTCGGTCGGCTACCGGGGAAGACGACTTGGATTTGTGAGCTCTGATGGCGGTCGAGTTTCTGCTCGAGGCTCCTCTTACGTGAACGCCACTCTCGATTTGAATGGGTTACAGATCATTCACGACGTCTTTTTCTTGCTTGAGGATCTAAGGAAGGGTATAATTCCTTTCGATACGGAGACAGAAGTGGAAGGATCCATGGGGCTTTTCTTTATCAAATTCCCAATTAAGACCTCGAATGTTTTTCTAGTGGAATATGTCATCCGAGTTAAAAGAATCCCTGTAATCCCTTATCATGTGAGGTATTTGTGGATACAAATAGCCAAACAATTGAGCATCAAGATTGCTACCCTGAGTGAACCAAAGATGGGAATTCGGTTTGATTATGACTCTTGTGACGTGAAGCTGAAACTGGGAAGTGGGAACTCCCCTGATATTGTTGAATCTGAGTGTTAA

Protein sequence

MSCSKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAFVFLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYRGRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGSMGLFFIKFPIKTSNVFLVEYVIRVKRIPVIPYHVRYLWIQIAKQLSIKIATLSEPKMGIRFDYDSCDVKLKLGSGNSPDIVESEC

Homology

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BLAST of Carg09863 vs. NCBI nr
Match: KAG7023573.1 (hypothetical protein SDJN02_14599, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 514.2 bits (1323), Expect = 6.6e-142
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0


Query: 1   MSCSKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAFV 60
           MSCSKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAFV
Sbjct: 1   MSCSKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAFV 60

Query: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR 120
           FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR
Sbjct: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR 120

Query: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180
           GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS
Sbjct: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180

Query: 181 MGLFFIKFPIKTSNVFLVEYVIRVKRIPVIPYHVRYLWIQIAKQLSIKIATLSEPKMGIR 240
           MGLFFIKFPIKTSNVFLVEYVIRVKRIPVIPYHVRYLWIQIAKQLSIKIATLSEPKMGIR
Sbjct: 181 MGLFFIKFPIKTSNVFLVEYVIRVKRIPVIPYHVRYLWIQIAKQLSIKIATLSEPKMGIR 240

Query: 241 FDYDSCDVKLKLGSGNSPDIVESEC 266
           FDYDSCDVKLKLGSGNSPDIVESEC
Sbjct: 241 FDYDSCDVKLKLGSGNSPDIVESEC 265

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BLAST of Carg09863 vs. NCBI nr
Match: KAG6589903.1 (hypothetical protein SDJN03_15326, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 369.0 bits (946), Expect = 3.4e-98
Identity = 191/193 (98.96%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MSCSKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAFV 60
           MSCSKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAFV
Sbjct: 1   MSCSKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAFV 60

Query: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR 120
           FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR
Sbjct: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR 120

Query: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180
           GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS
Sbjct: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180

Query: 181 MGLFFIKFPIKTS 194
           MGLFFIKFPIK +
Sbjct: 181 MGLFFIKFPIKAT 193

[Close]

BLAST of Carg09863 vs. NCBI nr
Match: XP_022987870.1 (uncharacterized protein LOC111485280 [Cucurbita maxima])

HSP 1 Score: 362.5 bits (929), Expect = 3.2e-96
Identity = 188/193 (97.41%), Postives = 190/193 (98.45%), Query Frame = 0


Query: 1   MSCSKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAFV 60
           MSCSKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSA V
Sbjct: 1   MSCSKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAVV 60

Query: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR 120
           FLLFPSDPSLQLVRLKLNGV VRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVG+R
Sbjct: 61  FLLFPSDPSLQLVRLKLNGVKVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGFR 120

Query: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180
           GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS
Sbjct: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180

Query: 181 MGLFFIKFPIKTS 194
           MGLFFIKFPIK +
Sbjct: 181 MGLFFIKFPIKAT 193

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BLAST of Carg09863 vs. NCBI nr
Match: XP_022960913.1 (uncharacterized protein LOC111461574 [Cucurbita moschata])

HSP 1 Score: 361.7 bits (927), Expect = 5.4e-96
Identity = 187/193 (96.89%), Postives = 189/193 (97.93%), Query Frame = 0


Query: 1   MSCSKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAFV 60
           MSCSKDGSIPVPYSPIPPNAAAPQN+VVLSLYRPPLYRQRRLLRLC LYSAAFLLLSA V
Sbjct: 1   MSCSKDGSIPVPYSPIPPNAAAPQNLVVLSLYRPPLYRQRRLLRLCVLYSAAFLLLSAVV 60

Query: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR 120
           FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRN NFFSLDYNYLGVSVGYR
Sbjct: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNNNFFSLDYNYLGVSVGYR 120

Query: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180
           GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS
Sbjct: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180

Query: 181 MGLFFIKFPIKTS 194
           MGLFFIKFPIK +
Sbjct: 181 MGLFFIKFPIKAT 193

[Close]

BLAST of Carg09863 vs. NCBI nr
Match: XP_023515526.1 (uncharacterized protein LOC111779657 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 358.2 bits (918), Expect = 6.0e-95
Identity = 186/193 (96.37%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MSCSKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAFV 60
           MSCSKDGSIPVPYSPIP NA APQNVVVLSLYRPPLYR RRLLRLCALYS AFLLLSA V
Sbjct: 1   MSCSKDGSIPVPYSPIPANATAPQNVVVLSLYRPPLYRHRRLLRLCALYSVAFLLLSAVV 60

Query: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR 120
           FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR
Sbjct: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR 120

Query: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180
           GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS
Sbjct: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180

Query: 181 MGLFFIKFPIKTS 194
           MGLFFIKFPIK +
Sbjct: 181 MGLFFIKFPIKAT 193

[Close]

BLAST of Carg09863 vs. ExPASy TrEMBL
Match: A0A6J1JI07 (uncharacterized protein LOC111485280 OS=Cucurbita maxima OX=3661 GN=LOC111485280 PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 1.5e-96
Identity = 188/193 (97.41%), Postives = 190/193 (98.45%), Query Frame = 0


Query: 1   MSCSKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAFV 60
           MSCSKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSA V
Sbjct: 1   MSCSKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAVV 60

Query: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR 120
           FLLFPSDPSLQLVRLKLNGV VRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVG+R
Sbjct: 61  FLLFPSDPSLQLVRLKLNGVKVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGFR 120

Query: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180
           GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS
Sbjct: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180

Query: 181 MGLFFIKFPIKTS 194
           MGLFFIKFPIK +
Sbjct: 181 MGLFFIKFPIKAT 193

[Close]

BLAST of Carg09863 vs. ExPASy TrEMBL
Match: A0A6J1HAC8 (uncharacterized protein LOC111461574 OS=Cucurbita moschata OX=3662 GN=LOC111461574 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 2.6e-96
Identity = 187/193 (96.89%), Postives = 189/193 (97.93%), Query Frame = 0


Query: 1   MSCSKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAFV 60
           MSCSKDGSIPVPYSPIPPNAAAPQN+VVLSLYRPPLYRQRRLLRLC LYSAAFLLLSA V
Sbjct: 1   MSCSKDGSIPVPYSPIPPNAAAPQNLVVLSLYRPPLYRQRRLLRLCVLYSAAFLLLSAVV 60

Query: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYR 120
           FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRN NFFSLDYNYLGVSVGYR
Sbjct: 61  FLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNNNFFSLDYNYLGVSVGYR 120

Query: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180
           GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS
Sbjct: 121 GRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGS 180

Query: 181 MGLFFIKFPIKTS 194
           MGLFFIKFPIK +
Sbjct: 181 MGLFFIKFPIKAT 193

[Close]

BLAST of Carg09863 vs. ExPASy TrEMBL
Match: A0A6J1CTN0 (uncharacterized protein LOC111014473 OS=Momordica charantia OX=3673 GN=LOC111014473 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 4.7e-77
Identity = 155/190 (81.58%), Postives = 170/190 (89.47%), Query Frame = 0


Query: 2   SCSKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAFVF 61
           S S+D S+PVPYS +PPN AA QNVVVLSLYRPP +R+RRLLRLCA YSAAFLLLSA  F
Sbjct: 3   SSSRDDSVPVPYSLLPPN-AAHQNVVVLSLYRPPRFRRRRLLRLCAFYSAAFLLLSAVAF 62

Query: 62  LLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYRG 121
           LLFP+DPSLQLVRLKLN + VRLLP ++LDLSFSASVRVRN NFFSLDYNYLGVSVGYRG
Sbjct: 63  LLFPADPSLQLVRLKLNRLKVRLLPVLLLDLSFSASVRVRNNNFFSLDYNYLGVSVGYRG 122

Query: 122 RRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGSM 181
           RRLGFVSS+GGRVSARG SYVNATLDLNG ++IHD  +L+EDL  GI+PFDTETEVEG M
Sbjct: 123 RRLGFVSSEGGRVSARGLSYVNATLDLNGFEVIHDGIYLIEDLATGIVPFDTETEVEGYM 182

Query: 182 GLFFIKFPIK 192
           GLFFIKFPIK
Sbjct: 183 GLFFIKFPIK 191

[Close]

BLAST of Carg09863 vs. ExPASy TrEMBL
Match: A0A0A0LTV4 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G369500 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 4.8e-74
Identity = 153/190 (80.53%), Postives = 166/190 (87.37%), Query Frame = 0


Query: 2   SCSKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAFVF 61
           S S D S+PVPY+ IP N AA QNVVVLSLYRPP  R RRLLRLCA YSAAFLLL A  F
Sbjct: 3   SSSGDDSVPVPYTLIPSN-AAQQNVVVLSLYRPPPCRHRRLLRLCAFYSAAFLLLFAVAF 62

Query: 62  LLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYRG 121
           LLFPSDPSLQLVRLKLN V V L+P V LDLSFS S+RVRNKNFFSL+YN+LGVSVGYRG
Sbjct: 63  LLFPSDPSLQLVRLKLNRVKVHLVPVVSLDLSFSVSLRVRNKNFFSLNYNFLGVSVGYRG 122

Query: 122 RRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGSM 181
           RRLG+VSS+GGRVSARGSSYVNATLDLNGL+++HDV +LL DL KGIIPFDTET+VEGSM
Sbjct: 123 RRLGYVSSEGGRVSARGSSYVNATLDLNGLEVVHDVLYLLADLGKGIIPFDTETDVEGSM 182

Query: 182 GLFFIKFPIK 192
           GLFFIK PIK
Sbjct: 183 GLFFIKIPIK 191

[Close]

BLAST of Carg09863 vs. ExPASy TrEMBL
Match: A0A5A7TX90 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00560 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 3.2e-70
Identity = 149/188 (79.26%), Postives = 161/188 (85.64%), Query Frame = 0


Query: 4   SKDGSIPVPYSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAFVFLL 63
           S D S+PVPY+ +  N AA QNVVVLSLYRP   R RRLLRL A YSAAFLLL A  FLL
Sbjct: 5   SGDDSVPVPYTLLSSN-AAQQNVVVLSLYRPTPCRHRRLLRLFAFYSAAFLLLFAVAFLL 64

Query: 64  FPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYRGRR 123
           FPSDPSLQLVRLKLN V V L+P V LDLSFS S+RVRNKNFFSL+YN+LGVSVGYRGRR
Sbjct: 65  FPSDPSLQLVRLKLNRVKVHLVPFVSLDLSFSVSLRVRNKNFFSLNYNFLGVSVGYRGRR 124

Query: 124 LGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGSMGL 183
           LG+VSS GGRVSARGSSYVNATLDLNGL+++HDV +LL DL KGIIPFDTETEVEGSMGL
Sbjct: 125 LGYVSSGGGRVSARGSSYVNATLDLNGLEVVHDVLYLLADLGKGIIPFDTETEVEGSMGL 184

Query: 184 FFIKFPIK 192
           FFIK PIK
Sbjct: 185 FFIKIPIK 191

[Close]

BLAST of Carg09863 vs. TAIR 10
Match: AT4G13270.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 174.9 bits (442), Expect = 8.8e-44
Identity = 93/195 (47.69%), Postives = 136/195 (69.74%), Query Frame = 0


Query: 1   MSCSKDGSIPVPYSPIPPNAAAPQNVVVLSLY----RPPLYRQRRLLRLCALYSAAFLLL 60
           M+ SK     +PY+P+ P++   Q+V++L+ Y    RP L R    LR   L++A  LLL
Sbjct: 1   MASSKHEDYGIPYTPL-PSSQPSQSVILLTPYRRHRRPSLLRN---LRCSLLFTAVILLL 60

Query: 61  SAFVFLLFPSDPSLQLVRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVS 120
           SA V+LL+PSDP + + R+ LN ++V     + LDLSFS +++VRN++FFSLDY+ L VS
Sbjct: 61  SAAVYLLYPSDPDITVSRINLNHISVVDSHKIALDLSFSLTIKVRNRDFFSLDYDSLVVS 120

Query: 121 VGYRGRRLGFVSSDGGRVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETE 180
           +GYRGR LG V S GG + AR SSY++ATL+L+GL+++HDV +L+ DL KG+IPFDT  +
Sbjct: 121 IGYRGRELGLVKSKGGHLKARDSSYIDATLELDGLEVVHDVIYLIGDLAKGVIPFDTIAQ 180

Query: 181 VEGSMGLFFIKFPIK 192
           V+G +G+     PI+
Sbjct: 181 VQGDLGVLLFNIPIQ 191

[Close]

BLAST of Carg09863 vs. TAIR 10
Match: AT1G52330.2 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 129.4 bits (324), Expect = 4.2e-30
Identity = 69/193 (35.75%), Postives = 116/193 (60.10%), Query Frame = 0


Query: 13  YSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAFVFLLFPSDPSLQL 72
           Y P+P +++   N  VL    P    +RR +    L S A +L    +++ +PSDP +++
Sbjct: 16  YKPLPSSSSHELNDAVLISSHPSPPSRRRFIISIFLISFASIL----IYIFWPSDPRIKI 75

Query: 73  VRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYRGRRLGFVSSDGG 132
           +R+K++ V+V   P   +D++   +++V N + +S D+  L V++ YRG+ LG VSSDGG
Sbjct: 76  IRVKISHVHVHRRPVPSIDMTLLVTLKVSNADVYSFDFTDLDVTIDYRGKTLGHVSSDGG 135

Query: 133 RVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGSMGLFFIKFPIKT 192
            V+A GSSY++A  +L+G+ +  DV  L+ DL KG + FDT TE  G +G+ F +FP+K 
Sbjct: 136 HVTAFGSSYLDAEAELDGVMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVLFFRFPLKV 195

Query: 193 SNVFLVEYVIRVK 206
            N+     +  +K
Sbjct: 196 RNLSFYSIIWFIK 204

[Close]

BLAST of Carg09863 vs. TAIR 10
Match: AT1G52330.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-29
Identity = 67/179 (37.43%), Postives = 111/179 (62.01%), Query Frame = 0


Query: 13  YSPIPPNAAAPQNVVVLSLYRPPLYRQRRLLRLCALYSAAFLLLSAFVFLLFPSDPSLQL 72
           Y P+P +++   N  VL    P    +RR +    L S A +L    +++ +PSDP +++
Sbjct: 16  YKPLPSSSSHELNDAVLISSHPSPPSRRRFIISIFLISFASIL----IYIFWPSDPRIKI 75

Query: 73  VRLKLNGVNVRLLPAVVLDLSFSASVRVRNKNFFSLDYNYLGVSVGYRGRRLGFVSSDGG 132
           +R+K++ V+V   P   +D++   +++V N + +S D+  L V++ YRG+ LG VSSDGG
Sbjct: 76  IRVKISHVHVHRRPVPSIDMTLLVTLKVSNADVYSFDFTDLDVTIDYRGKTLGHVSSDGG 135

Query: 133 RVSARGSSYVNATLDLNGLQIIHDVFFLLEDLRKGIIPFDTETEVEGSMGLFFIKFPIK 192
            V+A GSSY++A  +L+G+ +  DV  L+ DL KG + FDT TE  G +G+ F +FP+K
Sbjct: 136 HVTAFGSSYLDAEAELDGVMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVLFFRFPLK 190

The following BLAST results are available for this feature:

BLAST of Carg09863 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7023573.1	6.6e-142	100.00	hypothetical protein SDJN02_14599, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6589903.1	3.4e-98	98.96	hypothetical protein SDJN03_15326, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022987870.1	3.2e-96	97.41	uncharacterized protein LOC111485280 [Cucurbita maxima]	[more]
XP_022960913.1	5.4e-96	96.89	uncharacterized protein LOC111461574 [Cucurbita moschata]	[more]
XP_023515526.1	6.0e-95	96.37	uncharacterized protein LOC111779657 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg09863 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg09863 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JI07	1.5e-96	97.41	uncharacterized protein LOC111485280 OS=Cucurbita maxima OX=3661 GN=LOC111485280...	[more]
A0A6J1HAC8	2.6e-96	96.89	uncharacterized protein LOC111461574 OS=Cucurbita moschata OX=3662 GN=LOC1114615...	[more]
A0A6J1CTN0	4.7e-77	81.58	uncharacterized protein LOC111014473 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A0A0LTV4	4.8e-74	80.53	LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G369500 PE=4 ...	[more]
A0A5A7TX90	3.2e-70	79.26	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family isofor...	[more]

BLAST of Carg09863 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13270.1	8.8e-44	47.69	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G52330.2	4.2e-30	35.75	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G52330.1	1.2e-29	37.43	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.40.1820		coord: 66..199 e-value: 1.7E-6 score: 29.9
None	No IPR available	PANTHER	PTHR31852:SF119	LATE EMBRYOGENESIS ABUNDANT PROTEIN	coord: 6..193
None	No IPR available	PANTHER	PTHR31852	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 6..193
None	No IPR available	SUPERFAMILY	117070	LEA14-like	coord: 61..195
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 98..189 e-value: 1.6E-10 score: 41.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09863-RA	Carg09863-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane