Carg09785 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg09785
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiongibberellin-regulated protein 4-like
LocationCarg_Chr14: 2927817 .. 2929580 (-)
RNA-Seq ExpressionCarg09785
SyntenyCarg09785
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTTTAAGGATTTCAGCCGTTTGTATGATATTGCCAAAACAGCGCGATTGACGGGGCCTGCGCATGTGCCATGAGACGGTCCAAATCGAAGCAATGGAGACCCGCAAGCATATGAGCGACAACACTCGATTATTTCCCACCTTCTTCTTCCTTCCGCCCATTCTATTTATACCCACTGAGAATGAGGCCACAAACTCAGCACCCCGCTTTCCCTTTTCTGCTTTCCCTGTCTCTTCCATTTCAAGCTTCTTCTCTTTTAACTTACAATGGCGATGGCTAAGTTCGCCGCTGTCCTGCTCTTGGCTCTCATTGCGTTTTCCATGCTTCAAACCACTGTGAGACCTTCTTCTCCGTTGTCTTACTACTCTTATGCTCAGTCCCTTTCCTTTCGTCTTGACAGAACTTAACTCACTCTGTTTTTGTTTTGTGCTTCGATCTGTTTCTGTAGGTCATGGCTGGCAATGGACGTGGTGGTCGAAGCAGGGTAAAACTCTTTTTCTAGTTCTATGTTTGGTTTTGACTGGAAATCGGGGGTTTTCCATTGTGGCATTTTGTCGAACACCTTGTATGGTTGTGCTCACGTTTCGATTTGGTCTGTTCTTAATTTGATGTAGATCAGGCTTTTAAACACGTAAATCACTTTTTTGGCATTGCAACATTTTGTCGAACACTCCTGCTTCTCTGCTAACTTAAATCAGGCTTTAGAAATCTAAGATCGACAATTTGTTTTTACGGCATTTTGGGAAATACGTTGTGTTATTGTACTCACATTTTGTCGTTGGCTTTTTTCAGAACCCATACGGACCAGGGAGCGTCAAGATCTTCCGTAAGTATCCTCCTAATTCGAAATCCAAACAGTTTATGAGTCATTTTTGCGGCTCCTTTGGGTTGGATTTGTCTGGATTTGTGTCTGAAATGGGTGGTTATAAATAATTTACAGAATGCCCAAATCGGTGCGCCACTCGGTGCGGGAGGACACAATACCACAAACCATGCATGTTCTTCTGCCAAAAGTGCTGCAGGAAGTGCTTGTGTGTGCCCCCTGGCTACTACGGAAACAAAGCCGTGTGCCCTTGCTACAACAACTGGAAGACCAAGGAAGGAGGACCCAAATGCCCTTAAAAAACCAATTCATTAATCTCCATATCCATTTCCATTTGAATTTCCTCTGTTACTTTACTATTCCCTTTGCATTTTCCCGCTAACTCCATCTCATTTGTGTCCCCTTCAACAAAATGGGGCTCTGTTATGTTTCTGTCATTGTCCTCTGTTGGAGATGGGAAGAAACAGAGAGAAGAATGAAGAACTTTGTGACAGATTAGTGGGGACTTTTTGTTTTAAACTACCTTCCAAAGTGATTAGTGGGTTTGGATTATTTATAATATAATATATGAGCAATGAATGAAACATCTTGTTTCTATTTACATAGATGGTGTGAATTATGCGATGTTTTATTGGCTTTGAGAAGTGATATAATGATTAAACAGAGAATCCTGTTTCTTTAATCTTTACTTTCACTGTTTCCATGTGACACTCTCATTATTAGTCAAAACTCTGTCCTCCGCCTCACATGGATAGATTGACTGCCACTGTCCGGCATGTACAACTTCATCATCTGATCTTTTAAATTTGAGAACTGTTGCTCAAATCTTGTTTTTATGCATTTTTAAGCTTGTCTTGAAAATGATAGCAACTCCAAGCTTTTGAATGCTACAAACTAAACTAGCATACCACATTCAAACCTCCTTAACAAAAATGAGAC

mRNA sequence

TTTTTTTAAGGATTTCAGCCGTTTGTATGATATTGCCAAAACAGCGCGATTGACGGGGCCTGCGCATGTGCCATGAGACGGTCCAAATCGAAGCAATGGAGACCCGCAAGCATATGAGCGACAACACTCGATTATTTCCCACCTTCTTCTTCCTTCCGCCCATTCTATTTATACCCACTGAGAATGAGGCCACAAACTCAGCACCCCGCTTTCCCTTTTCTGCTTTCCCTGTCTCTTCCATTTCAAGCTTCTTCTCTTTTAACTTACAATGGCGATGGCTAAGTTCGCCGCTGTCCTGCTCTTGGCTCTCATTGCGTTTTCCATGCTTCAAACCACTGTCATGGCTGGCAATGGACGTGGTGGTCGAAGCAGGAACCCATACGGACCAGGGAGCGTCAAGATCTTCCGTAAGTATCCTCCTAATTCGAAATCCAAACAGTTTATGAGTCATTTTTGCGGCTCCTTTGGGTTGGATTTGTCTGGATTTAATGCCCAAATCGGTGCGCCACTCGGTGCGGGAGGACACAATACCACAAACCATGCATGTTCTTCTGCCAAAAGTGCTGCAGGAAGTGCTTGTGTGTGCCCCCTGGCTACTACGGAAACAAAGCCGTGTGCCCTTGCTACAACAACTGGAAGACCAAGGAAGGAGGACCCAAATGCCCTTAAAAAACCAATTCATTAATCTCCATATCCATTTCCATTTGAATTTCCTCTGTTACTTTACTATTCCCTTTGCATTTTCCCGCTAACTCCATCTCATTTGTGTCCCCTTCAACAAAATGGGGCTCTGTTATGTTTCTGTCATTGTCCTCTGTTGGAGATGGGAAGAAACAGAGAGAAGAATGAAGAACTTTGTGACAGATTAGTGGGGACTTTTTGTTTTAAACTACCTTCCAAAGTGATTAGTGGGTTTGGATTATTTATAATATAATATATGAGCAATGAATGAAACATCTTGTTTCTATTTACATAGATGGTGTGAATTATGCGATGTTTTATTGGCTTTGAGAAGTGATATAATGATTAAACAGAGAATCCTGTTTCTTTAATCTTTACTTTCACTGTTTCCATGTGACACTCTCATTATTAGTCAAAACTCTGTCCTCCGCCTCACATGGATAGATTGACTGCCACTGTCCGGCATGTACAACTTCATCATCTGATCTTTTAAATTTGAGAACTGTTGCTCAAATCTTGTTTTTATGCATTTTTAAGCTTGTCTTGAAAATGATAGCAACTCCAAGCTTTTGAATGCTACAAACTAAACTAGCATACCACATTCAAACCTCCTTAACAAAAATGAGAC

Coding sequence (CDS)

ATGGCGATGGCTAAGTTCGCCGCTGTCCTGCTCTTGGCTCTCATTGCGTTTTCCATGCTTCAAACCACTGTCATGGCTGGCAATGGACGTGGTGGTCGAAGCAGGAACCCATACGGACCAGGGAGCGTCAAGATCTTCCGTAAGTATCCTCCTAATTCGAAATCCAAACAGTTTATGAGTCATTTTTGCGGCTCCTTTGGGTTGGATTTGTCTGGATTTAATGCCCAAATCGGTGCGCCACTCGGTGCGGGAGGACACAATACCACAAACCATGCATGTTCTTCTGCCAAAAGTGCTGCAGGAAGTGCTTGTGTGTGCCCCCTGGCTACTACGGAAACAAAGCCGTGTGCCCTTGCTACAACAACTGGAAGACCAAGGAAGGAGGACCCAAATGCCCTTAAAAAACCAATTCATTAA

Protein sequence

MAMAKFAAVLLLALIAFSMLQTTVMAGNGRGGRSRNPYGPGSVKIFRKYPPNSKSKQFMSHFCGSFGLDLSGFNAQIGAPLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALATTTGRPRKEDPNALKKPIH
Homology
[Close]
BLAST of Carg09785 vs. NCBI nr
Match: KAG7017706.1 (hypothetical protein SDJN02_19572 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 271.2 bits (692), Expect = 5.0e-69
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 

Query: 1   MAMAKFAAVLLLALIAFSMLQTTVMAGNGRGGRSRNPYGPGSVKIFRKYPPNSKSKQFMS 60
           MAMAKFAAVLLLALIAFSMLQTTVMAGNGRGGRSRNPYGPGSVKIFRKYPPNSKSKQFMS
Sbjct: 1   MAMAKFAAVLLLALIAFSMLQTTVMAGNGRGGRSRNPYGPGSVKIFRKYPPNSKSKQFMS 60

Query: 61  HFCGSFGLDLSGFNAQIGAPLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALAT 120
           HFCGSFGLDLSGFNAQIGAPLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALAT
Sbjct: 61  HFCGSFGLDLSGFNAQIGAPLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALAT 120

Query: 121 TTGRPRKEDPNALKKPIH 139
           TTGRPRKEDPNALKKPIH
Sbjct: 121 TTGRPRKEDPNALKKPIH 138

[Close]
BLAST of Carg09785 vs. NCBI nr
Match: KAG6580964.1 (hypothetical protein SDJN03_20966, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.4 bits (311), Expect = 7.6e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 74  NAQIGAPLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALATTTGRPRKEDPNAL 133
           NAQIGAPLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALATTTGRPRKEDPNAL
Sbjct: 115 NAQIGAPLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALATTTGRPRKEDPNAL 174

Query: 134 KK 136
           KK
Sbjct: 175 KK 176

[Close]
BLAST of Carg09785 vs. NCBI nr
Match: XP_022933447.1 (uncharacterized protein LOC111440860 isoform X1 [Cucurbita moschata])

HSP 1 Score: 118.6 bits (296), Expect = 4.2e-23
Identity = 74/135 (54.81%), Postives = 83/135 (61.48%), Query Frame = 0 

Query: 1   MAMAKFAAVLLLALIAFSMLQTTVMAGNGRGGRSRNPYGPGSVKIFRKYPPNSKSKQFMS 60
           MAMAKFAA+L+L+LIA SM +TTVMAGNGRGGR+R                         
Sbjct: 3   MAMAKFAAILILSLIALSMFETTVMAGNGRGGRNR------------------------- 62

Query: 61  HFCGSFGLDLSGFNAQIGAPLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALAT 120
                        NAQ+GAPL AGGH+TTNHACS AK+AA SAC C   T ETK  ALAT
Sbjct: 63  -------------NAQVGAPLDAGGHSTTNHACSFAKNAAESACACRRVTMETKAFALAT 99

Query: 121 TTGRPRKEDPNALKK 136
           TTGR RKE PNAL+K
Sbjct: 123 TTGRQRKEGPNALRK 99

[Close]
BLAST of Carg09785 vs. NCBI nr
Match: KAG6741736.1 (hypothetical protein POTOM_055014 [Populus tomentosa])

HSP 1 Score: 101.7 bits (252), Expect = 5.3e-18
Identity = 68/136 (50.00%), Postives = 84/136 (61.76%), Query Frame = 0 

Query: 2   AMAKFAAVLLLALIAFSMLQTTVMAGNGRGG--RSRNPYGPGSVKIFRKYPPNSKSKQFM 61
           AMAKF AV LLALIA SMLQT V+A +G GG  +++N YGPGS+K F+       +    
Sbjct: 34  AMAKFVAVFLLALIAISMLQTLVVASHGHGGHHKNKNQYGPGSLKSFQINQFKRDNTPLK 93

Query: 62  SHFCGSFGLDLSGFNAQIGAPLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALA 121
              CG + +  S  N    A  GA   +T +HACSS +SAAGSA   P      K CALA
Sbjct: 94  ISICGLW-ISRSNQNVHHNARGGAARPSTISHACSSVRSAAGSASAFPQGIMGIKLCALA 153

Query: 122 TTTGRPRKEDPNALKK 136
           TTTGRPRKE P+AL++
Sbjct: 154 TTTGRPRKEGPSALEQ 168

[Close]
BLAST of Carg09785 vs. NCBI nr
Match: XP_023531468.1 (gibberellin-regulated protein 4-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-17
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 0 

Query: 1  MAMAKFAAVLLLALIAFSMLQTTVMAGNGRGGRSRNPYGPGSVKIFRKYPPNSKSKQFMS 60
          MAMAKFAA+L+L LIA SM +TTVMAGNGRGGR+RNPYGPGSV I+RKY PNSKS+QF+S
Sbjct: 1  MAMAKFAAILILFLIALSMFETTVMAGNGRGGRNRNPYGPGSVNIYRKYSPNSKSQQFLS 60

Query: 61 HF 63
          +F
Sbjct: 61 NF 62

[Close]
BLAST of Carg09785 vs. ExPASy TrEMBL
Match: A0A6J1EZT1 (uncharacterized protein LOC111440860 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111440860 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.0e-23
Identity = 74/135 (54.81%), Postives = 83/135 (61.48%), Query Frame = 0 

Query: 1   MAMAKFAAVLLLALIAFSMLQTTVMAGNGRGGRSRNPYGPGSVKIFRKYPPNSKSKQFMS 60
           MAMAKFAA+L+L+LIA SM +TTVMAGNGRGGR+R                         
Sbjct: 3   MAMAKFAAILILSLIALSMFETTVMAGNGRGGRNR------------------------- 62

Query: 61  HFCGSFGLDLSGFNAQIGAPLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALAT 120
                        NAQ+GAPL AGGH+TTNHACS AK+AA SAC C   T ETK  ALAT
Sbjct: 63  -------------NAQVGAPLDAGGHSTTNHACSFAKNAAESACACRRVTMETKAFALAT 99

Query: 121 TTGRPRKEDPNALKK 136
           TTGR RKE PNAL+K
Sbjct: 123 TTGRQRKEGPNALRK 99

[Close]
BLAST of Carg09785 vs. ExPASy TrEMBL
Match: A0A6J1J761 (gibberellin-regulated protein 4 OS=Cucurbita maxima OX=3661 GN=LOC111482365 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.0e-14
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1  MAMAKFAAVLLLALIAFSMLQTTVMAGNGRGGRSRNPYGPGSVKIFR 48
          MAMAKFAAVLLLALIAFSMLQTTVMAGNGRGGRSRNPYGPGSVKIF+
Sbjct: 1  MAMAKFAAVLLLALIAFSMLQTTVMAGNGRGGRSRNPYGPGSVKIFQ 47

[Close]
BLAST of Carg09785 vs. ExPASy TrEMBL
Match: A0A6J1FBA5 (gibberellin-regulated protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111442454 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.0e-14
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1  MAMAKFAAVLLLALIAFSMLQTTVMAGNGRGGRSRNPYGPGSVKIFR 48
          MAMAKFAAVLLLALIAFSMLQTTVMAGNGRGGRSRNPYGPGSVKIF+
Sbjct: 1  MAMAKFAAVLLLALIAFSMLQTTVMAGNGRGGRSRNPYGPGSVKIFQ 47

[Close]
BLAST of Carg09785 vs. ExPASy TrEMBL
Match: A0A5N6QY65 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007553 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.5e-13
Identity = 61/132 (46.21%), Postives = 68/132 (51.52%), Query Frame = 0 

Query: 3   MAKFAAVLLLALIAFSMLQTTVMAGNGRGGRSRNPYGPGSVKIFRKYPPNSKSKQFMSHF 62
           MAKF A LLLALIA SMLQT V+A +G GG   +                          
Sbjct: 1   MAKFVAALLLALIAISMLQTVVLASHGHGGHHHD-------------------------- 60

Query: 63  CGSFGLDLSGFNAQIGAPLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALATTT 122
                      NA   A  GA   NTT+HACSS +SAA SAC C    T TK CALATTT
Sbjct: 61  ---------NNNAHRNARGGAARPNTTSHACSSVRSAAKSACACLRGITGTKLCALATTT 97

Query: 123 GRPRKEDPNALK 135
           GRPRKE P+AL+
Sbjct: 121 GRPRKEAPSALE 97

[Close]
BLAST of Carg09785 vs. ExPASy TrEMBL
Match: A0A371FQX0 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_38739 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-12
Identity = 60/138 (43.48%), Postives = 69/138 (50.00%), Query Frame = 0 

Query: 1   MAMAKFAAVLLLALIAFSMLQTTVMAGNGRGGRSRNPYGPGSVKIFRKYPPNSKSKQFMS 60
           MAMAKF A ++LALIA SMLQT VMA NG+ G                            
Sbjct: 54  MAMAKFFAAMILALIAISMLQTLVMAANGQEGHL-------------------------- 113

Query: 61  HFCGSFGLDLSGFNAQIGAPLGAGGHNTTNHACSSAKSAAGSACVCPLATTETKPCALAT 120
                        NA   A       NTT+ AC S +SAAG+ACVCP      KPCALAT
Sbjct: 114 ---------YDNKNAHHNARGDVARPNTTSPACFSVRSAAGNACVCPRGIMVIKPCALAT 156

Query: 121 TTGRPRKEDPNALKKPIH 139
           T GRPRKEDP+AL+  +H
Sbjct: 174 TIGRPRKEDPSALELHLH 156

The following BLAST results are available for this feature:
BLAST of Carg09785 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7017706.15.0e-69100.00hypothetical protein SDJN02_19572 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6580964.17.6e-25100.00hypothetical protein SDJN03_20966, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022933447.14.2e-2354.81uncharacterized protein LOC111440860 isoform X1 [Cucurbita moschata][more]
KAG6741736.15.3e-1850.00hypothetical protein POTOM_055014 [Populus tomentosa][more]
XP_023531468.11.5e-1779.03gibberellin-regulated protein 4-like isoform X1 [Cucurbita pepo subsp. pepo][more]
BLAST of Carg09785 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09785 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EZT12.0e-2354.81uncharacterized protein LOC111440860 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1J7615.0e-1497.87gibberellin-regulated protein 4 OS=Cucurbita maxima OX=3661 GN=LOC111482365 PE=3... [more]
A0A6J1FBA55.0e-1497.87gibberellin-regulated protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC1114424... [more]
A0A5N6QY655.5e-1346.21Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007553 PE=4 SV=1[more]
A0A371FQX01.2e-1243.48Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_38739 P... [more]
BLAST of Carg09785 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09785-RACarg09785-RAmRNA