Carg09686 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09686
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	DUF1713 domain-containing protein
Location	Carg_Chr14: 3529975 .. 3530367 (-)
RNA-Seq Expression	Carg09686
Synteny	Carg09686

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGATGCTTCAAAAGCTCGTCAGAAAATCGCCACCAACAAGACTAATTGCTGCTTTGGGTACCCAGACCTCACAAAATCCCTTAAAACCCTACATTCTTCACCAGCCGCTTGATTTTGATAAGAAACCAGATCGGCATTGCGATTCTAATTTGAACTCTGTTTCTACTTCGAATCCATCTCACTTTTCCCTGTTTTACCCTAGTTTTCCATTTGGGTTTTGCTTGCCGCAAATCTCCTCATCTGGGATGCTTCCGTTCGAGCCCGATTTTGTTGAACAAGATGATTCTAGGAAATTGTGGGCTGATAGCGTGAAGAAGAAGAGGAAACGGAAGATGAACAAGCATAAGTACAAGAAGCTTAGGAAGCGACTCCGAAGACAGACTTAG

mRNA sequence

ATGGCGTCGATGCTTCAAAAGCTCGTCAGAAAATCGCCACCAACAAGACTAATTGCTGCTTTGGGTACCCAGACCTCACAAAATCCCTTAAAACCCTACATTCTTCACCAGCCGCTTGATTTTGATAAGAAACCAGATCGGCATTGCGATTCTAATTTGAACTCTGTTTCTACTTCGAATCCATCTCACTTTTCCCTGTTTTACCCTAGTTTTCCATTTGGGTTTTGCTTGCCGCAAATCTCCTCATCTGGGATGCTTCCGTTCGAGCCCGATTTTGTTGAACAAGATGATTCTAGGAAATTGTGGGCTGATAGCGTGAAGAAGAAGAGGAAACGGAAGATGAACAAGCATAAGTACAAGAAGCTTAGGAAGCGACTCCGAAGACAGACTTAG

Coding sequence (CDS)

ATGGCGTCGATGCTTCAAAAGCTCGTCAGAAAATCGCCACCAACAAGACTAATTGCTGCTTTGGGTACCCAGACCTCACAAAATCCCTTAAAACCCTACATTCTTCACCAGCCGCTTGATTTTGATAAGAAACCAGATCGGCATTGCGATTCTAATTTGAACTCTGTTTCTACTTCGAATCCATCTCACTTTTCCCTGTTTTACCCTAGTTTTCCATTTGGGTTTTGCTTGCCGCAAATCTCCTCATCTGGGATGCTTCCGTTCGAGCCCGATTTTGTTGAACAAGATGATTCTAGGAAATTGTGGGCTGATAGCGTGAAGAAGAAGAGGAAACGGAAGATGAACAAGCATAAGTACAAGAAGCTTAGGAAGCGACTCCGAAGACAGACTTAG

Protein sequence

MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSNPSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKKRKRKMNKHKYKKLRKRLRRQT

Homology

[Close]

BLAST of Carg09686 vs. NCBI nr
Match: KAG7017804.1 (hypothetical protein SDJN02_19670, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 255.4 bits (651), Expect = 2.7e-64
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60
           MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN
Sbjct: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60

Query: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 131
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of Carg09686 vs. NCBI nr
Match: XP_023526336.1 (uncharacterized protein LOC111789858 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.8 bits (647), Expect = 7.8e-64
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60
           MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN
Sbjct: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60

Query: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQD+SRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDESRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 131
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of Carg09686 vs. NCBI nr
Match: XP_022934588.1 (uncharacterized protein LOC111441723 [Cucurbita moschata])

HSP 1 Score: 253.8 bits (647), Expect = 7.8e-64
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60
           MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN
Sbjct: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60

Query: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PSHFSLFYPSFPFGFCLPQISSSGMLPFEP+FVEQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPEFVEQDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 131
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of Carg09686 vs. NCBI nr
Match: XP_022984015.1 (uncharacterized protein LOC111482461 [Cucurbita maxima])

HSP 1 Score: 244.6 bits (623), Expect = 4.8e-61
Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60
           MASMLQKLVRKS PTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTS+
Sbjct: 1   MASMLQKLVRKSSPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSD 60

Query: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKKRKRKMNKHKYK 120
            SHF LFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  LSHFPLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 131
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of Carg09686 vs. NCBI nr
Match: KAE8650785.1 (hypothetical protein Csa_017463 [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 8.7e-55
Identity = 114/130 (87.69%), Postives = 119/130 (91.54%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60
           MASMLQ L+RKSPPTRLIAALG QTSQN   P+ILHQPLDFDKKPD HC SN+NS STSN
Sbjct: 72  MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSN 131

Query: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PSHFS FYPSFPFG CLPQISS+G+LPFEPD VEQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 132 PSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYK 191

Query: 121 KLRKRLRRQT 131
           KLRKRLRRQT
Sbjct: 192 KLRKRLRRQT 201

[Close]

BLAST of Carg09686 vs. ExPASy TrEMBL
Match: A0A6J1F832 (uncharacterized protein LOC111441723 OS=Cucurbita moschata OX=3662 GN=LOC111441723 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.8e-64
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60
           MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN
Sbjct: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60

Query: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PSHFSLFYPSFPFGFCLPQISSSGMLPFEP+FVEQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPEFVEQDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 131
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of Carg09686 vs. ExPASy TrEMBL
Match: A0A6J1J7I5 (uncharacterized protein LOC111482461 OS=Cucurbita maxima OX=3661 GN=LOC111482461 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.3e-61
Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60
           MASMLQKLVRKS PTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTS+
Sbjct: 1   MASMLQKLVRKSSPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSD 60

Query: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKKRKRKMNKHKYK 120
            SHF LFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  LSHFPLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 131
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of Carg09686 vs. ExPASy TrEMBL
Match: A0A0A0LDP0 (DUF1713 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G592160 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 4.2e-55
Identity = 114/130 (87.69%), Postives = 119/130 (91.54%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60
           MASMLQ L+RKSPPTRLIAALG QTSQN   P+ILHQPLDFDKKPD HC SN+NS STSN
Sbjct: 1   MASMLQNLIRKSPPTRLIAALGAQTSQNLSTPFILHQPLDFDKKPDAHCHSNINSASTSN 60

Query: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PSHFS FYPSFPFG CLPQISS+G+LPFEPD VEQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSHFSQFYPSFPFGLCLPQISSTGLLPFEPDCVEQDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 131
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of Carg09686 vs. ExPASy TrEMBL
Match: A0A5A7UNU9 (DUF1713 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00280 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 5.1e-53
Identity = 112/130 (86.15%), Postives = 118/130 (90.77%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60
           MASMLQKL+RKSPP+RLIAALG QTSQN   P+ILHQPLDFDKK D H  SNLNS STSN
Sbjct: 1   MASMLQKLIRKSPPSRLIAALGAQTSQNLSTPFILHQPLDFDKKSDAHSHSNLNSASTSN 60

Query: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PS FS FYPSFPFG CLPQISS+G+LPFEPD+VEQDDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSQFSQFYPSFPFGLCLPQISSTGLLPFEPDYVEQDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 131
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of Carg09686 vs. ExPASy TrEMBL
Match: A0A6J1EJL0 (uncharacterized protein LOC111435191 OS=Cucurbita moschata OX=3662 GN=LOC111435191 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 3.7e-51
Identity = 108/130 (83.08%), Postives = 117/130 (90.00%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFDKKPDRHCDSNLNSVSTSN 60
           MAS+LQKL+RKSPPTR IAAL +QTSQN   PYILHQPLD D+KPD HCDSNLN+VSTSN
Sbjct: 1   MASILQKLIRKSPPTRTIAALASQTSQNLSLPYILHQPLDIDRKPDGHCDSNLNAVSTSN 60

Query: 61  PSHFSLFYPSFPFGFCLPQISSSGMLPFEPDFVEQDDSRKLWADSVKKKRKRKMNKHKYK 120
           PS FSLF+PSFPFG CL QISS+G + FEPD+VE DDSRKLWADSVKKKRKRKMNKHKYK
Sbjct: 61  PSQFSLFFPSFPFGLCLQQISSTGSIRFEPDYVEDDDSRKLWADSVKKKRKRKMNKHKYK 120

Query: 121 KLRKRLRRQT 131
           KLRKRLRRQT
Sbjct: 121 KLRKRLRRQT 130

[Close]

BLAST of Carg09686 vs. TAIR 10
Match: AT5G63150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1713, mitochondria (InterPro:IPR013177); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 7.2e-07
Identity = 48/138 (34.78%), Postives = 74/138 (53.62%), Query Frame = 0


Query: 1   MASMLQKLVRKSPPTRLIAALGTQTSQNPLKPYILHQPLDFD---KKPDRHCDSN-LNSV 60
           MA+++ + +R       I  L T  S    +    +   + D   +KPD    +N L ++
Sbjct: 1   MANLIPRFLRNKSCFNSIQRLTTTPSLFTYQKPYFNNNNNIDSVIEKPDPVSFTNPLITL 60

Query: 61  STSNPSHFSLFYPSFPFGFCL-PQISSSGMLPFEPDFVEQDDSRK---LWADSVKKKRKR 120
           S +  +    FYPSF  G CL P++     L       E+++  K   ++ADSVKKKRK+
Sbjct: 61  SGNESNQPMRFYPSFSMGLCLNPKMIQGLDLAETASLEEEEEDTKEIVIYADSVKKKRKK 120

Query: 121 KMNKHKYKKLRKRLRRQT 131
           KMNKHKY+KLRK+L R++
Sbjct: 121 KMNKHKYRKLRKQLGRKS 138

The following BLAST results are available for this feature:

BLAST of Carg09686 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017804.1	2.7e-64	100.00	hypothetical protein SDJN02_19670, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023526336.1	7.8e-64	99.23	uncharacterized protein LOC111789858 [Cucurbita pepo subsp. pepo]	[more]
XP_022934588.1	7.8e-64	99.23	uncharacterized protein LOC111441723 [Cucurbita moschata]	[more]
XP_022984015.1	4.8e-61	96.92	uncharacterized protein LOC111482461 [Cucurbita maxima]	[more]
KAE8650785.1	8.7e-55	87.69	hypothetical protein Csa_017463 [Cucumis sativus]	[more]

BLAST of Carg09686 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg09686 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F832	3.8e-64	99.23	uncharacterized protein LOC111441723 OS=Cucurbita moschata OX=3662 GN=LOC1114417...	[more]
A0A6J1J7I5	2.3e-61	96.92	uncharacterized protein LOC111482461 OS=Cucurbita maxima OX=3661 GN=LOC111482461...	[more]
A0A0A0LDP0	4.2e-55	87.69	DUF1713 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G592160 PE=...	[more]
A0A5A7UNU9	5.1e-53	86.15	DUF1713 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1EJL0	3.7e-51	83.08	uncharacterized protein LOC111435191 OS=Cucurbita moschata OX=3662 GN=LOC1114351...	[more]

BLAST of Carg09686 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63150.1	7.2e-07	34.78	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013177	Mitochondrial mRNA-processing protein COX24, C-terminal	SMART	SM01155	DUF1713_2	coord: 102..129 e-value: 3.3E-7 score: 39.9
IPR013177	Mitochondrial mRNA-processing protein COX24, C-terminal	PFAM	PF08213	DUF1713	coord: 103..128 e-value: 1.5E-9 score: 37.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..130
None	No IPR available	PANTHER	PTHR32035	AURORA KINASE A-INTERACTING PROTEIN	coord: 1..130
None	No IPR available	PANTHER	PTHR32035:SF8	SUBFAMILY NOT NAMED	coord: 1..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09686-RA	Carg09686-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing