Carg09648 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg09648
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr14: 3700970 .. 3701174 (-)
RNA-Seq ExpressionCarg09648
SyntenyCarg09648
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATTACCTTTTGATCAAGCTTGGATTGGAATATGTGATTTTTGTTTTTCAGTCGGGATTTCACAAATTTCTGTGTAATGTTTTTGTACAGTTTTGATCCGCCTTTTGGAAGTTCGTCGTCTGCTTGCAACGTTCCTGGATACGAATTTCTTGTGTCTAATAGATTTTAG

mRNA sequence

ATGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATTACCTTTTGATCAAGCTTGGATTGGAATATGTGATTTTTGTTTTTCAGTCGGGATTTCACAAATTTCTTTTTGATCCGCCTTTTGGAAGTTCGTCGTCTGCTTGCAACGTTCCTGGATACGAATTTCTTGTGTCTAATAGATTTTAG

Coding sequence (CDS)

ATGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATTACCTTTTGATCAAGCTTGGATTGGAATATGTGATTTTTGTTTTTCAGTCGGGATTTCACAAATTTCTTTTTGATCCGCCTTTTGGAAGTTCGTCGTCTGCTTGCAACGTTCCTGGATACGAATTTCTTGTGTCTAATAGATTTTAG

Protein sequence

MEEEEEEEEEEEDYLLIKLGLEYVIFVFQSGFHKFLFDPPFGSSSSACNVPGYEFLVSNRF
Homology
[Close]
BLAST of Carg09648 vs. NCBI nr
Match: KAG7017842.1 (hypothetical protein SDJN02_19708, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.3 bits (303), Expect = 2.9e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 

Query: 1  MEEEEEEEEEEEDYLLIKLGLEYVIFVFQSGFHKFLFDPPFGSSSSACNVPGYEFLVSNR 60
          MEEEEEEEEEEEDYLLIKLGLEYVIFVFQSGFHKFLFDPPFGSSSSACNVPGYEFLVSNR
Sbjct: 1  MEEEEEEEEEEEDYLLIKLGLEYVIFVFQSGFHKFLFDPPFGSSSSACNVPGYEFLVSNR 60

Query: 61 F 62
          F
Sbjct: 61 F 61

[Close]
BLAST of Carg09648 vs. NCBI nr
Match: KAG6581110.1 (hypothetical protein SDJN03_21112, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.2 bits (139), Expect = 3.0e-05
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 37  FDPPFGSSSSACNVPGYEFLVSNRF 62
           FDPPFGSSSSACNVPGYEFLVSNRF
Sbjct: 169 FDPPFGSSSSACNVPGYEFLVSNRF 193

The following BLAST results are available for this feature:
BLAST of Carg09648 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7017842.12.9e-24100.00hypothetical protein SDJN02_19708, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6581110.13.0e-05100.00hypothetical protein SDJN03_21112, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg09648 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09648 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg09648 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09648-RACarg09648-RAmRNA