Carg09594 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg09594
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr17: 7000280 .. 7000623 (-)
RNA-Seq Expression	Carg09594
Synteny	Carg09594

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGGGATTCATAAGAAAGAGGGGAAAGAGACGAAGCGGGAAGCAAAGTGAAAACCCGCTGAATTTCGGTCACTTCGGCGCGAATTTTGCAGAGCTCCTAGTCCTTCTCCTCAAGCTCGCGTCTCGATTCCTTTACCAGAGAAGTTACTTACTATCGCCATAGCCTCTGCTCTCAAGGTACGTTCTCTTCTATACTTCCCGTTTGCTTTCCAAGAAAACGATCCACTGAAAGAAAGCACCATGCTAAGAAAAGGTTTTGATCCTGAGTTTCTATATTATTACTATTGTTTCAGTCATTTACTTTTGAAATTTGCGGAAAGGAAGACCTACTAGTGGATTGA

mRNA sequence

ATGGGCGGGATTCATAAGAAAGAGGGGAAAGAGACGAAGCGGGAAGCAAAAGCTCCTAGTCCTTCTCCTCAAGCTCGCGTCTCGATTCCTTTACCAGAGAAGTTACTTACTATCGCCATAGCCTCTGCTCTCAAGTCATTTACTTTTGAAATTTGCGGAAAGGAAGACCTACTAGTGGATTGA

Coding sequence (CDS)

ATGGGCGGGATTCATAAGAAAGAGGGGAAAGAGACGAAGCGGGAAGCAAAAGCTCCTAGTCCTTCTCCTCAAGCTCGCGTCTCGATTCCTTTACCAGAGAAGTTACTTACTATCGCCATAGCCTCTGCTCTCAAGTCATTTACTTTTGAAATTTGCGGAAAGGAAGACCTACTAGTGGATTGA

Protein sequence

MGGIHKKEGKETKREAKAPSPSPQARVSIPLPEKLLTIAIASALKSFTFEICGKEDLLVD

Homology

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BLAST of Carg09594 vs. NCBI nr
Match: KAG7014147.1 (hypothetical protein SDJN02_24320, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.5 bits (293), Expect = 4.0e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MGGIHKKEGKETKREAKAPSPSPQARVSIPLPEKLLTIAIASALKSFTFEICGKEDLLVD 60
          MGGIHKKEGKETKREAKAPSPSPQARVSIPLPEKLLTIAIASALKSFTFEICGKEDLLVD
Sbjct: 1  MGGIHKKEGKETKREAKAPSPSPQARVSIPLPEKLLTIAIASALKSFTFEICGKEDLLVD 60

The following BLAST results are available for this feature:

BLAST of Carg09594 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014147.1	4.0e-23	100.00	hypothetical protein SDJN02_24320, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg09594 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg09594 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg09594 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg09594-RA	Carg09594-RA	mRNA